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Yao Xu - Publications

Affiliations: 
Vanderbilt University, Nashville, TN 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhao C, Xu Y, Wang B, Johnson CH. : A model system for expanding the study of cyanobacterial circadian rhythms. Frontiers in Physiology. 13: 1085959. PMID 36685199 DOI: 10.3389/fphys.2022.1085959  0.665
2021 Wang B, Xu Y, Wang X, Yuan JS, Johnson CH, Young JD, Yu J. A guanidine-degrading enzyme controls genomic stability of ethylene-producing cyanobacteria. Nature Communications. 12: 5150. PMID 34446715 DOI: 10.1038/s41467-021-25369-x  0.419
2020 Fustin JM, Ye S, Rakers C, Kaneko K, Fukumoto K, Yamano M, Versteven M, Grünewald E, Cargill SJ, Tamai TK, Xu Y, Jabbur ML, Kojima R, Lamberti ML, Yoshioka-Kobayashi K, et al. Publisher Correction: Methylation deficiency disrupts biological rhythms from bacteria to humans. Communications Biology. 3: 295. PMID 32499511 DOI: 10.1038/s42003-020-1031-0  0.398
2020 Fustin JM, Ye S, Rakers C, Kaneko K, Fukumoto K, Yamano M, Versteven M, Grünewald E, Cargill SJ, Tamai TK, Xu Y, Jabbur ML, Kojima R, Lamberti ML, Yoshioka-Kobayashi K, et al. Methylation deficiency disrupts biological rhythms from bacteria to humans. Communications Biology. 3: 211. PMID 32376902 DOI: 10.1038/s42003-020-0942-0  0.446
2020 Cheah YE, Xu Y, Sacco SA, Babele PK, Zheng AO, Johnson CH, Young JD. Systematic identification and elimination of flux bottlenecks in the aldehyde production pathway of Synechococcus elongatus PCC 7942. Metabolic Engineering. PMID 32222320 DOI: 10.1016/J.Ymben.2020.03.007  0.491
2017 Jazmin LJ, Xu Y, Cheah YE, Adebiyi AO, Johnson CH, Young JD. Isotopically nonstationary (13)C flux analysis of cyanobacterial isobutyraldehyde production. Metabolic Engineering. PMID 28479191 DOI: 10.1016/J.Ymben.2017.05.001  0.491
2017 Johnson CH, Zhao C, Xu Y, Mori T. Timing the day: what makes bacterial clocks tick? Nature Reviews. Microbiology. PMID 28216658 DOI: 10.1038/Nrmicro.2016.196  0.747
2014 Pattanayek R, Xu Y, Lamichhane A, Johnson CH, Egli M. An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC. Acta Crystallographica. Section D, Biological Crystallography. 70: 1375-90. PMID 24816106 DOI: 10.1107/S1399004714003228  0.524
2013 Xu Y, Weyman PD, Umetani M, Xiong J, Qin X, Xu Q, Iwasaki H, Johnson CH. Circadian yin-yang regulation and its manipulation to globally reprogram gene expression. Current Biology : Cb. 23: 2365-74. PMID 24210617 DOI: 10.1016/J.Cub.2013.10.011  0.656
2013 Xu Y, Ma P, Shah P, Rokas A, Liu Y, Johnson CH. Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Nature. 495: 116-20. PMID 23417065 DOI: 10.1038/Nature11942  0.767
2013 Egli M, Pattanayek R, Sheehan JH, Xu Y, Mori T, Smith JA, Johnson CH. Loop-loop interactions regulate KaiA-stimulated KaiC phosphorylation in the cyanobacterial KaiABC circadian clock. Biochemistry. 52: 1208-20. PMID 23351065 DOI: 10.1021/Bi301691A  0.647
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, et al. Peroxiredoxins are conserved markers of circadian rhythms. Nature. 485: 459-64. PMID 22622569 DOI: 10.1038/Nature11088  0.681
2012 Egli M, Mori T, Pattanayek R, Xu Y, Qin X, Johnson CH. Dephosphorylation of the core clock protein KaiC in the cyanobacterial KaiABC circadian oscillator proceeds via an ATP synthase mechanism. Biochemistry. 51: 1547-58. PMID 22304631 DOI: 10.1021/Bi201525N  0.71
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, et al. Erratum: Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms Nature. 489: 590-590. DOI: 10.1038/Nature11427  0.614
2010 Qin X, Byrne M, Xu Y, Mori T, Johnson CH. Coupling of a core post-translational pacemaker to a slave transcription/translation feedback loop in a circadian system. Plos Biology. 8: e1000394. PMID 20563306 DOI: 10.1371/Journal.Pbio.1000394  0.738
2009 Pattanayek R, Mori T, Xu Y, Pattanayek S, Johnson CH, Egli M. Structures of KaiC circadian clock mutant proteins: a new phosphorylation site at T426 and mechanisms of kinase, ATPase and phosphatase. Plos One. 4: e7529. PMID 19956664 DOI: 10.1371/Journal.Pone.0007529  0.635
2009 Xu Y, Mori T, Qin X, Yan H, Egli M, Johnson CH. Intramolecular regulation of phosphorylation status of the circadian clock protein KaiC. Plos One. 4: e7509. PMID 19946629 DOI: 10.1371/Journal.Pone.0007509  0.716
2009 Wang Y, Ji J, Bu H, Zhao Y, Xu Y, Johnson CH, Kolár J. [Genetic transformation of Nicotiana tabacum L. by Agrobacterium tumefaciens carrying genes in the melatonin biosynthesis pathway and the enhancement of antioxidative capability in transgenic plants]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 25: 1014-21. PMID 19835142  0.399
2008 Johnson CH, Mori T, Xu Y. A cyanobacterial circadian clockwork. Current Biology : Cb. 18: R816-R825. PMID 18786387 DOI: 10.1016/J.Cub.2008.07.012  0.697
2007 Woelfle MA, Xu Y, Qin X, Johnson CH. Circadian rhythms of superhelical status of DNA in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 104: 18819-24. PMID 18000054 DOI: 10.1073/Pnas.0706069104  0.754
2006 Pattanayek R, Williams DR, Pattanayek S, Xu Y, Mori T, Johnson CH, Stewart PL, Egli M. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods. The Embo Journal. 25: 2017-28. PMID 16628225 DOI: 10.1038/Sj.Emboj.7601086  0.68
2004 Xu Y, Mori T, Pattanayek R, Pattanayek S, Egli M, Johnson CH. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses. Proceedings of the National Academy of Sciences of the United States of America. 101: 13933-8. PMID 15347809 DOI: 10.1073/Pnas.0404768101  0.667
2004 Pattanayek R, Wang J, Mori T, Xu Y, Johnson CH, Egli M. Visualizing a circadian clock protein: crystal structure of KaiC and functional insights. Molecular Cell. 15: 375-88. PMID 15304218 DOI: 10.1016/J.Molcel.2004.07.013  0.66
2004 Subramanian C, Xu Y, Johnson CH, von Arnim AG. In vivo detection of protein-protein interaction in plant cells using BRET. Methods in Molecular Biology (Clifton, N.J.). 284: 271-86. PMID 15173623 DOI: 10.1385/1-59259-816-1:271  0.545
2003 Xu Y, Mori T, Johnson CH. Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. The Embo Journal. 22: 2117-26. PMID 12727878 DOI: 10.1093/Emboj/Cdg168  0.701
2003 Xu Y, Kanauchi A, von Arnim AG, Piston DW, Johnson CH. Bioluminescence resonance energy transfer: monitoring protein-protein interactions in living cells. Methods in Enzymology. 360: 289-301. PMID 12622156 DOI: 10.1016/S0076-6879(03)60116-3  0.632
2002 Mori T, Saveliev SV, Xu Y, Stafford WF, Cox MM, Inman RB, Johnson CH. Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 17203-8. PMID 12477935 DOI: 10.1073/Pnas.262578499  0.644
2002 Xu Y, Johnson CH, Piston D. Bioluminescence resonance energy transfer assays for protein-protein interactions in living cells. Methods in Molecular Biology (Clifton, N.J.). 183: 121-33. PMID 12136748 DOI: 10.1385/1-59259-280-5:121  0.557
2001 Xu Y, Johnson CH. A clock- and light-regulated gene that links the circadian oscillator to LHCB gene expression. The Plant Cell. 13: 1411-25. PMID 11402169 DOI: 10.1105/Tpc.13.6.1411  0.561
2000 Xu Y, Mori T, Johnson CH. Circadian clock-protein expression in cyanobacteria: rhythms and phase setting. The Embo Journal. 19: 3349-57. PMID 10880447 DOI: 10.1093/Emboj/19.13.3349  0.663
1999 Xu Y, Piston DW, Johnson CH. A bioluminescence resonance energy transfer (BRET) system: application to interacting circadian clock proteins. Proceedings of the National Academy of Sciences of the United States of America. 96: 151-6. PMID 9874787 DOI: 10.1073/Pnas.96.1.151  0.582
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