Olin K. Silander, Ph.D.
Affiliations: | University of California, San Diego, La Jolla, CA |
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| Preska Steinberg A, Silander OK, Kussell E. (2023) Correlated substitutions reveal SARS-like coronaviruses recombine frequently with a diverse set of structured gene pools. Proceedings of the National Academy of Sciences of the United States of America. 120: e2206945119 |
| Vlková M, Silander OK. (2022) Gene regulation in Escherichia coli is commonly selected for both high plasticity and low noise. Nature Ecology & Evolution |
| Freed NE, Vlková M, Faisal MB, et al. (2020) Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding. Biology Methods & Protocols. 5: bpaa014 |
| Kaiser M, Jug F, Julou T, et al. (2018) Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software. Nature Communications. 9: 212 |
| Freed NE, Bumann D, Silander OK. (2016) Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality. Bmc Microbiology. 16: 203 |
| Wolf L, Silander OK, van Nimwegen E. (2015) Expression noise facilitates the evolution of gene regulation. Elife. 4 |
| Wolf L, Silander OK, Nimwegen Ev. (2015) Author response: Expression noise facilitates the evolution of gene regulation Elife |
| Bertels F, Silander OK, Pachkov M, et al. (2014) Automated reconstruction of whole-genome phylogenies from short-sequence reads. Molecular Biology and Evolution. 31: 1077-88 |
| Blank D, Wolf L, Ackermann M, et al. (2014) The predictability of molecular evolution during functional innovation. Proceedings of the National Academy of Sciences of the United States of America. 111: 3044-9 |
| Hofsteenge N, van Nimwegen E, Silander OK. (2013) Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli. Bmc Microbiology. 13: 25 |