Andrew D. Fernandes, Ph.D.

North Carolina State University, Raleigh, NC 
Computational biology, molecular evolution
"Andrew Fernandes"


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William R. Atchley grad student 2006 NCSU
 (Quantifying phylogenetic conservation in protein molecular evolution.)
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Nichols AC, Black M, Yoo J, et al. (2014) Exploiting high-throughput cell line drug screening studies to identify candidate therapeutic agents in head and neck cancer. Bmc Pharmacology & Toxicology. 15: 66
Fernandes AD, Reid JN, Macklaim JM, et al. (2014) Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis. Microbiome. 2: 15
Macklaim JM, Fernandes AD, Di Bella JM, et al. (2013) Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis. Microbiome. 1: 12
Fernandes AD, Macklaim JM, Linn TG, et al. (2013) ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq. Plos One. 8: e67019
Fernandes AD. (2012) No evidence that equations cause impeded communication among biologists. Proceedings of the National Academy of Sciences of the United States of America. 109: E3057; author reply
Wild G, Fernandes AD. (2012) Corrigendum Journal of Evolutionary Biology. 25: 599-600
Kleinstiver BP, Bérubé-Janzen W, Fernandes AD, et al. (2011) Divalent metal ion differentially regulates the sequential nicking reactions of the GIY-YIG homing endonuclease I-BmoI. Plos One. 6: e23804
Fernandes AD, Kleinstiver BP, Edgell DR, et al. (2010) Estimating the evidence of selection and the reliability of inference in unigenic evolution. Algorithms For Molecular Biology : Amb. 5: 35
Gloor GB, Hummelen R, Macklaim JM, et al. (2010) Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products. Plos One. 5: e15406
Hummelen R, Fernandes AD, Macklaim JM, et al. (2010) Deep sequencing of the vaginal microbiota of women with HIV. Plos One. 5: e12078
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