Timothy Y. James, Ph.D.

Affiliations: 
Duke University, Durham, NC 
Area:
Fungal evolution and phylogenetics
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"Timothy James"

Parents

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Rytas Vilgalys grad student 2003 Duke
 (The evolution of mating-type genes in the mushroom fungi (Homobasidiomycetes).)
Hanna Johannesson post-doc 2006-2007 Uppsala
 (Competition and cooperation among nuclei of the forest pathogen Heterobasidion annosum)
Jan Stenlid post-doc 2006-2007 Swedish University of Agricultural Sciences
 (Competition and cooperation among nuclei of the forest pathogen Heterobasidion annosum)
Jianping Xu post-doc 2008 McMaster University (Mycotree)
 (Genetic control of mitochondrial inheritance by the mating-type locus of the pathogenic yeast Cryptococcus neoformans)
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Publications

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Dirks AC, Methven AS, Miller AN, et al. (2025) Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota). Molecular Phylogenetics and Evolution. 108286
Lu DS, Peris D, Sønstebø JH, et al. (2024) Reticulate evolution and rapid development of reproductive barriers upon secondary contact in a forest fungus. Current Biology : Cb
Dziuba MK, McIntire KM, Seto K, et al. (2024) Phylogeny, morphology, virulence, ecology, and host range of (Ordosporidae), a microsporidian symbiont of spp. Mbio. e0058224
Clemons RA, Yacoub MN, Faust E, et al. (2024) An endogenous DNA virus in an amphibian-killing fungus associated with pathogen genotype and virulence. Current Biology : Cb
Carvalho T, Belasen AM, Toledo LF, et al. (2024) Coevolution of a generalist pathogen with many hosts: the case of the amphibian chytrid Batrachochytrium dendrobatidis. Current Opinion in Microbiology. 78: 102435
Gryganskyi AP, Golan J, Muszewska A, et al. (2023) Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? Microorganisms. 11
Seto K, Simmons DR, Quandt CA, et al. (2023) A combined microscopy and single-cell sequencing approach reveals the ecology, morphology, and phylogeny of uncultured lineages of zoosporic fungi. Mbio. e0131323
Anderson FM, Visser ND, Amses KR, et al. (2023) Candida albicans selection for human commensalism results in substantial within-host diversity without decreasing fitness for invasive disease. Plos Biology. 21: e3001822
Case NT, Berman J, Blehert DS, et al. (2022) The future of fungi: threats and opportunities. G3 (Bethesda, Md.)
Amses KR, Simmons DR, Longcore JE, et al. (2022) Diploid-dominant life cycles characterize the early evolution of Fungi. Proceedings of the National Academy of Sciences of the United States of America. 119: e2116841119
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