Sourav Chatterji, Ph.D.

2006 University of California, Berkeley, Berkeley, CA, United States 
"Sourav Chatterji"


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Lior Pachter grad student 2006 UC Berkeley
 (Computational analyses of eukaryotic gene evolution.)
Jonathan A. Eisen post-doc UC Davis
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Wu M, Chatterji S, Eisen JA. (2012) Accounting for alignment uncertainty in phylogenomics. Plos One. 7: e30288
Woyke T, Xie G, Copeland A, et al. (2009) Assembling the marine metagenome, one cell at a time. Plos One. 4: e5299
Wu D, Raymond J, Wu M, et al. (2009) Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. Plos One. 4: e4207
Chatterji S, Yamazaki I, Bai Z, et al. (2008) CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 17-28
Clark AG, Eisen MB, et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18
Chatterji S, Pachter L. (2007) Patterns of gene duplication and intron loss in the ENCODE regions suggest a confounding factor. Genomics. 90: 44-8
Chatterji S, Pachter L. (2006) Reference based annotation with GeneMapper. Genome Biology. 7: R29
Chatterji S, Pachter L. (2005) Large multiple organism gene finding by collapsed Gibbs sampling. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 599-608
Breier AM, Chatterji S, Cozzarelli NR. (2004) Prediction of Saccharomyces cerevisiae replication origins. Genome Biology. 5: R22
Gibbs RA, Weinstock GM, Metzker ML, et al. (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521
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