Sourav Chatterji, Ph.D.
Affiliations: | 2006 | University of California, Berkeley, Berkeley, CA, United States |
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"Sourav Chatterji"Parents
Sign in to add mentor| Lior Pachter | grad student | 2006 | UC Berkeley | |
| (Computational analyses of eukaryotic gene evolution.) | ||||
| Jonathan A. Eisen | post-doc | UC Davis | ||
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Publications
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| Wu M, Chatterji S, Eisen JA. (2012) Accounting for alignment uncertainty in phylogenomics. Plos One. 7: e30288 |
| Woyke T, Xie G, Copeland A, et al. (2009) Assembling the marine metagenome, one cell at a time. Plos One. 4: e5299 |
| Wu D, Raymond J, Wu M, et al. (2009) Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. Plos One. 4: e4207 |
| Chatterji S, Yamazaki I, Bai Z, et al. (2008) CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 17-28 |
| Clark AG, Eisen MB, et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18 |
| Chatterji S, Pachter L. (2007) Patterns of gene duplication and intron loss in the ENCODE regions suggest a confounding factor. Genomics. 90: 44-8 |
| Chatterji S, Pachter L. (2006) Reference based annotation with GeneMapper. Genome Biology. 7: R29 |
| Chatterji S, Pachter L. (2005) Large multiple organism gene finding by collapsed Gibbs sampling. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 599-608 |
| Breier AM, Chatterji S, Cozzarelli NR. (2004) Prediction of Saccharomyces cerevisiae replication origins. Genome Biology. 5: R22 |
| Gibbs RA, Weinstock GM, Metzker ML, et al. (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521 |