Peter M. Huggins, Ph.D.

Affiliations: 
2008 University of California, Berkeley, Berkeley, CA 
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"Peter Huggins"

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Lior Pachter grad student 2008 UC Berkeley
 (Polytopes in computational biology.)
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Publications

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Papasaikas P, Rao A, Huggins P, et al. (2015) Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data. Bmc Genomics. 16: S7
Haws DC, Huggins P, O'Neill EM, et al. (2012) A support vector machine based test for incongruence between sets of trees in tree space. Bmc Bioinformatics. 13: 210
Huggins P, Zhong S, Shiff I, et al. (2011) DECOD: fast and accurate discriminative DNA motif finding. Bioinformatics (Oxford, England). 27: 2361-7
Huggins PM, Li W, Haws D, et al. (2011) Bayes estimators for phylogenetic reconstruction. Systematic Biology. 60: 528-40
Malaspinas AS, Eriksson N, Huggins P. (2011) Parametric analysis of alignment and phylogenetic uncertainty. Bulletin of Mathematical Biology. 73: 795-810
Arnaoudova E, Haws DC, Huggins P, et al. (2010) Statistical phylogenetic tree analysis using differences of means. Frontiers in Neuroscience. 4
Eickmeyer K, Huggins P, Pachter L, et al. (2008) On the optimality of the neighbor-joining algorithm. Algorithms For Molecular Biology : Amb. 3: 5
Huggins P, Pachter L, Sturmfels B. (2007) Toward the human genotope. Bulletin of Mathematical Biology. 69: 2723-35
Dewey CN, Huggins PM, Woods K, et al. (2006) Parametric alignment of Drosophila genomes. Plos Computational Biology. 2: e73
De Loera JA, Haws D, Hemmecke R, et al. (2004) Short rational functions for toric algebra and applications Journal of Symbolic Computation. 38: 959-973
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