Casey Bergman
Affiliations: | University of Georgia, Athens, Athens, GA, United States |
Area:
evolution, genomics, noncoding DNAWebsite:
http://bergmanlab.genetics.uga.edu/Google:
"Casey Bergman"Cross-listing: FlyTree - Computational Biology Tree
Parents
Sign in to add mentor| Charles Aquadro | research assistant | 1995-1996 | Cornell (FlyTree) | |
| Martin Kreitman | grad student | 1996-2001 | Chicago | |
| (Evolutionary analyses of transcriptional control sequences in Drosophila.) | ||||
| Susan Celniker | post-doc | 2001-2003 | LBNL (FlyTree) | |
| Michael Ashburner | post-doc | 2003-2005 | Cambridge (FlyTree) | |
Children
Sign in to add trainee| Shunhua Han | grad student | 2017- | University of Georgia (Computational Biology Tree) |
| Preston Basting | grad student | 2018- | University of Georgia (Computational Biology Tree) |
| Jingxuan Chen | grad student | 2019- | University of Georgia (Computational Biology Tree) |
| Michael Barton | grad student | 2007-2009 | University of Manchester (Computational Biology Tree) |
| Raquel Linheiro | grad student | 2007-2011 | University of Manchester (Computational Biology Tree) |
| Martin Gerner | grad student | 2008-2012 | University of Manchester (Computational Biology Tree) |
| Pedro Olivares Chauvet | grad student | 2008-2012 | University of Manchester (Computational Biology Tree) |
| Florence Gutzwiller | grad student | 2012-2016 | University of Manchester (Computational Biology Tree) |
| Manee Manee | grad student | 2012-2016 | University of Manchester (Computational Biology Tree) |
| Michael Nelson | grad student | 2012-2016 | University of Manchester (Computational Biology Tree) |
| Guilherme Dias | post-doc | 2018- | University of Georgia (Computational Biology Tree) |
| Helena Bailes | post-doc | 2006-2007 | University of Manchester (Computational Biology Tree) |
| Joachim Baran | post-doc | 2009-2010 | University of Manchester (Computational Biology Tree) |
| Dave T. Gerrard | post-doc | 2009-2011 | University of Manchester |
| Maximillian Haeussler | post-doc | 2009-2011 | University of Manchester (Computational Biology Tree) |
| Mar Marzo | post-doc | 2014-2016 | University of Manchester (Computational Biology Tree) |
Collaborators
Sign in to add collaborator| Michael Ludwig | collaborator | 1996-2001 | Chicago |
| Manolis Dermitzakis | collaborator | 2000-2003 | Penn State (FlyTree) |
| Daniel Avery Pollard | collaborator | 2001-2004 | LBNL |
| Dmitri Petrov | collaborator | 2002-2005 | LBNL (FlyTree) |
| Hadi Quesneville | collaborator | 2003-2007 | Université Pierre et Marie Curie – Paris VI (FlyTree) |
| David H. Ardell | collaborator | 2004-2007 | Uppsala (Computational Biology Tree) |
| Thomas Down | collaborator | 2004-2007 | The Wellcome Trust Sanger Institute (Computational Biology Tree) |
| Jose M. Ranz | collaborator | 2004-2007 | Cambridge |
| Stein Aerts | collaborator | 2006-2008 | KU Leuven (FlyTree) |
| Douda Bensasson | collaborator | 2005-2009 | University of Manchester |
| Andy Clark | collaborator | 2000-2010 | Cornell |
| Sam Griffiths-Jones | collaborator | 2006-2010 | University of Manchester (Computational Biology Tree) |
| Goran Nenadic | collaborator | 2006-2011 | University of Manchester (Computational Biology Tree) |
BETA: Related publications
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Publications
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| Chen J, Garfinkel DJ, Bergman CM. (2023) Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in . Biorxiv : the Preprint Server For Biology |
| Chen J, Basting PJ, Han S, et al. (2023) Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast. Mobile Dna. 14: 8 |
| Chen J, Basting PJ, Han S, et al. (2023) Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast. Biorxiv : the Preprint Server For Biology |
| Han S, Dias GB, Basting PJ, et al. (2022) Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line. Nucleic Acids Research |
| Han S, Dias GB, Basting PJ, et al. (2022) Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sub-lines. Genetics |
| Chen J, McQueary H, Hall DW, et al. (2022) Genome Assembly of the Ty1-Less Saccharomyces paradoxus Strain DG1768. Microbiology Resource Announcements. 11: e0086821 |
| Chen J, Garfinkel DJ, Bergman CM. (2022) Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001. Microbiology Resource Announcements. e0097221 |
| Han S, Basting PJ, Dias GB, et al. (2021) Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture. Genetics. 219 |
| Mariyappa D, Rusch DB, Han S, et al. (2021) A novel transposable element based authentication protocol for Drosophila cell lines. G3 (Bethesda, Md.) |
| Dias GB, Aldossary AM, El-Shafie HAF, et al. (2021) Complete mitochondrial genome of the longhorn date palm stem borer (Reiche, 1878). Mitochondrial Dna. Part B, Resources. 6: 3214-3216 |