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Jeffrey L. Thorne, Ph.D.

Affiliations: 
Genetics North Carolina State University, Raleigh, NC 
Area:
molecular evolution
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Parents

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Joseph Felsenstein grad student 1986-1991 University of Washington

Children

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Douglas  M. Robinson grad student 1999-2003 NCSU
Elizabeth H. Scholl grad student 2004 NCSU
Jiaye Yu grad student 2000-2005 NCSU
Jixin Deng grad student 2006 NCSU
Sang Chul  C. Choi grad student 2003-2007 NCSU
Yu-Min Lin grad student 2008 NCSU
Rachel Anne Myers grad student 2010 NCSU
Hui-Jie Lee grad student 2014 NCSU
Kuangyu Wang grad student 2015 NCSU
Xiang Ji grad student 2013-2017 NCSU
Stephane Aris-Brosou post-doc NCSU
Reed A. Cartwright post-doc NCSU
Asger Hobolth post-doc NCSU
Chris A. Nasrallah post-doc UC Berkeley
Benjamin Redelings post-doc NCSU
Tae-Kun Seo post-doc NCSU

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Publications

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Seo TK, Thorne JL. (2017) Information Criteria for Comparing Partition Schemes. Systematic Biology
Lee HJ, Kishino H, Rodrigue N, et al. (2016) Grouping substitution types into different relaxed molecular clocks. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371
Ji X, Griffing A, Thorne JL. (2016) A phylogenetic approach finds abundant interlocus gene conversion in yeast. Molecular Biology and Evolution
Wang K, Yu S, Ji X, et al. (2015) Roles of solvent accessibility and gene expression in modeling protein sequence evolution. Evolutionary Bioinformatics Online. 11: 85-96
Lee HJ, Rodrigue N, Thorne JL. (2015) Relaxing the Molecular Clock to Different Degrees for Different Substitution Types. Molecular Biology and Evolution. 32: 1948-61
Lassiter ES, Russ C, Nusbaum C, et al. (2015) Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species. Current Genetics
Liberles DA, Teichmann SA, Bahar I, et al. (2012) The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85
Thorne JL, Lartillot N, Rodrigue N, et al. (2012) Codon models as a vehicle for reconciling population genetics with interspecific sequence data Codon Evolution: Mechanisms and Models
Cartwright RA, Lartillot N, Thorne JL. (2011) History can matter: non-Markovian behavior of ancestral lineages. Systematic Biology. 60: 276-90
Yokoyama KD, Thorne JL, Wray GA. (2011) Coordinated genome-wide modifications within proximal promoter cis-regulatory elements during vertebrate evolution. Genome Biology and Evolution. 3: 66-74
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