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Wenne R, Bach L, Zbawicka M, et al. (2016) A first report on coexistence and hybridization of Mytilus trossulus and M. edulis mussels in Greenland Polar Biology. 39: 343-355
Bayha KM, Chang MH, Mariani CL, et al. (2015) Worldwide phylogeography of the invasive ctenophore Mnemiopsis leidyi (Ctenophora) based on nuclear and mitochondrial DNA data Biological Invasions. 17: 827-850
McDonald JH. (2010) Temperature adaptation at homologous sites in proteins from nine thermophile-mesophile species pairs. Genome Biology and Evolution. 2: 267-76
Riginos C, McDonald JH. (2003) Positive selection on an acrosomal sperm protein, M7 lysin, in three species of the mussel genus Mytilus. Molecular Biology and Evolution. 20: 200-7
Verrelli BC, McDonald JH, Argyropoulos G, et al. (2002) Evidence for balancing selection from nucleotide sequence analyses of human G6PD. American Journal of Human Genetics. 71: 1112-28
Bradley RD, Adkins RM, Honeycutt RL, et al. (1998) Nucleotide polymorphism at the alcohol dehydrogenase locus of pocket gophers, genus Geomys. Molecular Biology and Evolution. 15: 709-17
McDonald JH. (1998) Improved tests for heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence. Molecular Biology and Evolution. 15: 377-84
McDonald JH, Verrelli BC, Geyer LB. (1996) Lack of geographic variation in anonymous nuclear polymorphisms in the American oyster, Crassostrea virginica. Molecular Biology and Evolution. 13: 1114-8
McDonald JH. (1996) Detecting non-neutral heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence. Molecular Biology and Evolution. 13: 253-60
Costa JT, McDonald JH, Pierce NE. (1996) The effect of ant association on the population genetics of the Australian butterfly Jalmenus evagoras (Lepidoptera: Lycaenidae) Biological Journal of the Linnean Society. 58: 287-306