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Thomas D. Kocher, PhD

Affiliations: 
1977-1981 Biology Yale University, New Haven, CT 
 1981-1986 Biology University of Colorado, Boulder, Boulder, CO, United States 
 1986-1989 Biochemistry University of California, Berkeley, Berkeley, CA 
 1989-2007 Zoology University of New Hampshire, Durham, NH, United States 
 2007- Biology University of Maryland, College Park, College Park, MD 
Area:
Evolutionary Genetics
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Parents

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Kenneth R McKaye research assistant Yale
Jeffry B. Mitton grad student CU Boulder
Allan C. Wilson post-doc UC Berkeley

Children

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Jonathan Runstadler grad student 1992 UNH (Cell Biology Tree)
Bai Xiong grad student 1992 UNH
Diane A Caporale grad student 1994 UNH
Woo-Jai Lee grad student 1994 UNH
Jeremy Glasner grad student 1996 UNH
Nicole T. Perna grad student 1996 UNH
Jeffrey A. Markert grad student 1998 UNH
Patrick D. Danley grad student 2001 UNH
Nancy Garnhart grad student 2001 UNH
Richard C. Albertson grad student 2002 UNH
Jason P. Curole grad student 2002 UNH
Karl Diller grad student 2002 UNH
Aimee E Howe grad student 2003 UNH
Bo-Young Lee grad student 2004 UNH
Michael R. Kidd grad student 2006 UNH (Neurotree)
Jennifer R Ser grad student 2007 UNH
Claire T O'Quin grad student 2014 University of Maryland
Matthew A Conte grad student 2018 University of Maryland
William J Gammerdinger grad student 2018 University of Maryland
Elizabeth Frances Clark grad student 2019 University of Maryland
Scott C. France post-doc 1993-1996 UNH (Anatomy Tree)
Patricia E. Rosel post-doc 1993-1997 UNH
Takayuki Katagiri post-doc 2001-2003 UNH
J. Todd Streelman post-doc 1999-2004 UNH
Avner Cnaani post-doc 2003-2006 UNH
Raymond E, Engeszer post-doc 2007-2008 University of Maryland
Jianzhou Cui post-doc 2008-2009 University of Maryland
Reade B. Roberts post-doc 2005-2011 UNH (Cell Biology Tree)
Koji Fujimura post-doc 2008-2011 University of Maryland

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Publications

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Sun L, Gao T, Wang F, et al. (2020) Chromosome-level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi-C technology. Molecular Ecology Resources
Zheng Q, Xiao H, Shi H, et al. (2020) Loss of Cyp11c1 causes delayed spermatogenesis due to absence of 11-ketotestosterone. The Journal of Endocrinology
Tao W, Shi H, Yang J, et al. (2019) Homozygous mutation of foxh1 arrests oogenesis causing infertility in female Nile tilapia. Biology of Reproduction
Carleton KL, Escobar-Camacho D, Kocher TD. (2019) Visual adaptation could aid sympatric speciation in a deep crater lake. Molecular Ecology
Yourick MR, Sandkam BA, Gammerdinger WJ, et al. (2019) Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses. Molecular Ecology Resources
Conte MA, Joshi R, Moore EC, et al. (2019) Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes. Gigascience. 8
Clark FE, Conte MA, Kocher TD. (2018) Genomic Characterization of a B Chromosome in Lake Malawi Cichlid Fishes. Genes. 9
Gammerdinger WJ, Kocher TD. (2018) Unusual Diversity of Sex Chromosomes in African Cichlid Fishes. Genes. 9
Gammerdinger WJ, Kocher TD. (2018) Understanding Student Perceptions and Practices for Pre-Lecture Content Reading in the Genetics Classroom. Journal of Microbiology & Biology Education. 19
Tao W, Chen J, Tan D, et al. (2018) Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis. Bmc Genomics. 19: 363
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