Bruce H. Rannala, PhD

Affiliations: 
University of California, Davis, Davis, CA 
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"Bruce Rannala"
Cross-listing: MathTree - Computational Biology Tree

Parents

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John A. Hartigan grad student 1995 Yale (MathTree)
Günter Wagner grad student 1995 Yale
Montgomery Slatkin post-doc 1998 UC Berkeley

Children

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Karen A. Cranston grad student 2001-2007 University of Alberta
Jiansi Gao grad student 2022 UC Davis
Sneha Chakraborty grad student 2023 UC Davis
Anna Nagel grad student 2023 UC Davis
Michael R. May post-doc UC Davis

Collaborators

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Ziheng Yang collaborator
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Publications

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Flouri T, Jiao X, Huang J, et al. (2023) Efficient Bayesian inference under the multispecies coalescent with migration. Proceedings of the National Academy of Sciences of the United States of America. 120: e2310708120
May MR, Rannala B. (2023) Phylogenies increase power to detect highly transmissible viral genome variants. Medrxiv : the Preprint Server For Health Sciences
Nagel AA, Rannala B. (2023) Bayesian phylogenetic inference of HIV latent lineage ages using serial sequences. Journal of the Royal Society, Interface. 20: 20230022
Tiley GP, Flouri T, Jiao X, et al. (2023) Estimation of species divergence times in presence of cross-species gene flow. Systematic Biology
Gao J, May MR, Rannala B, et al. (2023) Model misspecification misleads inference of the spatial dynamics of disease outbreaks. Proceedings of the National Academy of Sciences of the United States of America. 120: e2213913120
Chakraborty S, Rannala B. (2023) An Efficient Exact Algorithm for Identifying Hybrids Using Population Genomic Sequences. Genetics
Gao J, May MR, Rannala B, et al. (2023) PrioriTree: a utility for improving phylodynamic analyses in BEAST. Bioinformatics (Oxford, England). 39
Flouri T, Huang J, Jiao X, et al. (2022) Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent. Molecular Biology and Evolution. 39
Gao J, May MR, Rannala B, et al. (2022) New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread. Molecular Biology and Evolution
Jiao X, Flouris T, Rannala B, et al. (2020) The Impact of Cross-Species Gene Flow on Species Tree Estimation. Systematic Biology
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