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Alexander van Oudenaarden, Ph.D.

Physics Massachusetts Institute of Technology, Cambridge, MA, United States 
"Alexander van Oudenaarden"

Cross-listing: Physics Tree - Chemistry Tree


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Johan E. Mooij grad student 1998 Delft University of Technology (Physics Tree)
 (Quantum vortices and quantum interference effects in circuits of small tunnel junctions)


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Ertugrul Mustafa Ozbudak grad student MIT (Physics Tree)
Arjun Raj grad student (BME Tree)
Murat Acar grad student 2007 MIT (Physics Tree)
Scott A. Rifkin post-doc MIT
Jeffrey C. Gore post-doc 2007-2010 MIT (Chemistry Tree)
Siddharth S. Dey post-doc 2012-2017 Hubrecht Institute (Cell & Gene Therapy Tree)
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Sen M, Mooijman D, Chialastri A, et al. (2021) Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development. Nature Communications. 12: 1286
Mooijman D, Dey SS, Boisset JC, et al. (2016) Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction. Nature Biotechnology
Kind J, Pagie L, de Vries SS, et al. (2015) Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells. Cell. 163: 134-47
Dey SS, Kester L, Spanjaard B, et al. (2015) Integrated genome and transcriptome sequencing of the same cell. Nature Biotechnology. 33: 285-9
Grün D, Kester L, van Oudenaarden A. (2014) Validation of noise models for single-cell transcriptomics. Nature Methods. 11: 637-40
Steine EJ, Ehrich M, Bell GW, et al. (2011) Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer. The Journal of Clinical Investigation. 121: 1748-52
Youk H, Raj A, van Oudenaarden A. (2010) Imaging single mRNA molecules in yeast. Methods in Enzymology. 470: 429-46
Acar M, Pando BF, Arnold FH, et al. (2010) A general mechanism for network-dosage compensation in gene circuits. Science (New York, N.Y.). 329: 1656-60
Raj A, Rifkin SA, Andersen E, et al. (2010) Variability in gene expression underlies incomplete penetrance. Nature. 463: 913-8
Khalil AM, Guttman M, Huarte M, et al. (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences of the United States of America. 106: 11667-72
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