William Bruno, PhD

Affiliations: 
Theoretical Biology & Biophysics Los Alamos National Laboratory, Los Alamos, NM, United States 
Area:
Theoretical and computational molecular evolution, ion channel models
Website:
http://www.t6.lanl.gov/billb
Google:
"William Bruno"
Cross-listing: Physics Tree

Parents

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William Bialek grad student UC Berkeley (Neurotree)

Children

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P. E. Martin research assistant LANL (Physics Tree)
Lars Arvestad grad student LANL (Physics Tree)
M Kapoor grad student (Physics Tree)
Ian Holmes post-doc UC Berkeley (Physics Tree)
Jeffrey M. Koshi post-doc LANL (Physics Tree)
David D. Pollock post-doc LANL

Collaborators

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Nicholas D. Socci collaborator LANL (Physics Tree)
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Publications

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Bruno WJ, Ullah G, Mak DO, et al. (2013) Automated maximum likelihood separation of signal from baseline in noisy quantal data. Biophysical Journal. 105: 68-79
Berendzen J, Bruno WJ, Cohn JD, et al. (2012) Rapid phylogenetic and functional classification of short genomic fragments with signature peptides. Bmc Research Notes. 5: 460
Ullah G, Bruno WJ, Pearson JE. (2012) Simplification of reversible Markov chains by removal of states with low equilibrium occupancy. Journal of Theoretical Biology. 311: 117-29
Srinivasan T, Bruno WJ, Wan R, et al. (2012) In vitro recombinants of antibiotic-resistant Chlamydia trachomatis strains have statistically more breakpoints than clinical recombinants for the same sequenced loci and exhibit selection at unexpected loci. Journal of Bacteriology. 194: 617-26
Maljkovic Berry I, Athreya G, Kothari M, et al. (2009) The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data. Epidemics. 1: 230-9
Dean D, Bruno WJ, Wan R, et al. (2009) Predicting phenotype and emerging strains among Chlamydia trachomatis infections. Emerging Infectious Diseases. 15: 1385-94
Hraber P, Kuiken C, Waugh M, et al. (2008) Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index. The Journal of General Virology. 89: 2098-107
Maljkovic Berry I, Ribeiro R, Kothari M, et al. (2007) Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases. Journal of Virology. 81: 10625-35
Gomes JP, Bruno WJ, Nunes A, et al. (2007) Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots. Genome Research. 17: 50-60
Hraber PT, Fischer W, Bruno WJ, et al. (2006) Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes. Virology Journal. 3: 103
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