Daniel S. Rokhsar

University of California, Berkeley, Berkeley, CA 
Computation & Theory
"Daniel Rokhsar"
Cross-listing: Neurotree - Physics Tree


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Philip Warren Anderson research assistant 1981-1982 Princeton (Physics Tree)
 (senior thesis)
Daniel L. Stein research assistant 1981-1982 Princeton (Physics Tree)
 (senior thesis)
N. David Mermin grad student 1982-1987 Cornell (Physics Tree)
James Sethna grad student 1982-1987 Cornell (Physics Tree)


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David M. Deaven grad student 1989-1993 UC Berkeley (Physics Tree)
Paul Edward Lammert grad student 1989-1993 UC Berkeley (Physics Tree)
Kanwal Gurbax Singh grad student 1989-1993 UC Berkeley (Physics Tree)
Dane D Morgan grad student 1998 UC Berkeley (Physics Tree)
Daniel A. Butts grad student 2000 UC Berkeley (Neurotree)
Elliot Greenfield grad student 2001 UC Berkeley (Physics Tree)
Michael D. Grabe grad student 2002 UC Berkeley (Physics Tree)
Jarrod A. Chapman grad student 2004 UC Berkeley (Physics Tree)
Nicholas H. Putnam grad student 2004 UC Berkeley (Physics Tree)
David A. Hendrix grad student 2007 UC Berkeley (Physics Tree)
Mansi Srivastava grad student 2009 UC Berkeley
Alistair N. Boettiger grad student 2011 UC Berkeley (Physics Tree)
Daria Gavriouchkina post-doc (Neurotree)
Ferdinand Marletaz post-doc UC Berkeley
Benjamin K. Blackman post-doc 2010-2010 UC Berkeley
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Simakov O, Marlétaz F, Yue JX, et al. (2020) Deeply conserved synteny resolves early events in vertebrate evolution. Nature Ecology & Evolution
Gehrke AR, Neverett E, Luo YJ, et al. (2019) Acoel genome reveals the regulatory landscape of whole-body regeneration. Science (New York, N.Y.). 363
Session AM, Uno Y, Kwon T, et al. (2016) Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343
Farley EK, Olson KM, Zhang W, et al. (2016) Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers. Proceedings of the National Academy of Sciences of the United States of America
Bredeson JV, Lyons JB, Prochnik SE, et al. (2016) Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Nature Biotechnology
Putnam NH, O'Connell BL, Stites JC, et al. (2016) Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. Genome Research
Simakov O, Kawashima T, Marlétaz F, et al. (2015) Hemichordate genomes and deuterostome origins. Nature
Farley EK, Olson KM, Zhang W, et al. (2015) Suboptimization of developmental enhancers. Science (New York, N.Y.). 350: 325-8
Albertin CB, Simakov O, Mitros T, et al. (2015) The octopus genome and the evolution of cephalopod neural and morphological novelties. Nature. 524: 220-4
Glazer AM, Killingbeck EE, Mitros T, et al. (2015) Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing. G3 (Bethesda, Md.). 5: 1463-72
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