francois serra

Affiliations: 
2007-2012 Evolutionary Genomics Centro de Investigación Príncipe Felipe, València, Comunidad Valenciana, Spain 
 2012-2018 Structural Genomics Centre de Regulació Genòmica, Barcelona 
 2019- Computational Biology Barcelona Supercomputing Center, Barcelona, Catalunya, Spain 
Area:
Comparative Genomics, Adaptive Evolution, Structural Genomics
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"francois serra"

Parents

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Hernán Javier Dopazo grad student 2007- CIPF
Alfonso Valencia post-doc 2019- (Computational Biology Tree)

Children

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silvia galan grad student

Collaborators

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Arnau Montagud collaborator 2019- Barcelona Supercomputing Center (Computational Biology Tree)
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Publications

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Serra F, Nieto-Aliseda A, Fanlo-Escudero L, et al. (2024) p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response. Nature Communications. 15: 2821
Armaos A, Serra F, Núñez-Carpintero I, et al. (2023) The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer. Nature Communications. 14: 8084
Tomás-Daza L, Rovirosa L, López-Martí P, et al. (2023) Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution. Nature Communications. 14: 268
Galan S, Serra F, Marti-Renom MA. (2022) Identification of chromatin loops from Hi-C interaction matrices by CTCF-CTCF topology classification. Nar Genomics and Bioinformatics. 4: lqac021
Richart L, Lapi E, Pancaldi V, et al. (2021) STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells. Nucleic Acids Research
Di Stefano M, Castillo D, Serra F, et al. (2021) Analysis, Modeling, and Visualization of Chromosome Conformation Capture Experiments. Methods in Molecular Biology (Clifton, N.J.). 2157: 35-63
Di Stefano M, Stadhouders R, Farabella I, et al. (2020) Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs. Nature Communications. 11: 2564
Sati S, Bonev B, Szabo Q, et al. (2020) 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence. Molecular Cell
Beekman R, Chapaprieta V, Russiñol N, et al. (2018) The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia. Nature Medicine
Stadhouders R, Vidal E, Serra F, et al. (2018) Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming. Nature Genetics
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