Timothy Paape, Ph.D.

2009 Biology University of California, San Diego, La Jolla, CA 
Genetics, Botany Biology, Evolution and Development Biology
"Timothy Paape"


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Joshua R. Kohn grad student 2009 UCSD
 (Evolutionary genetics of the self-incompatibility in Solanaceae and Papaveraceae.)
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Novikova PY, Hohmann N, Nizhynska V, et al. (2016) Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. Nature Genetics
Kubo K, Paape T, Hatakeyama M, et al. (2015) Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia. Nature Plants. 1: 14005
Wicker T, Oberhaensli S, Parlange F, et al. (2013) The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nature Genetics. 45: 1092-6
Paape T, Bataillon T, Zhou P, et al. (2013) Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula. Molecular Ecology. 22: 3525-38
Stanton-Geddes J, Paape T, Epstein B, et al. (2013) Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula. Plos One. 8: e65688
Yoder JB, Briskine R, Mudge J, et al. (2013) Phylogenetic signal variation in the genomes of Medicago (Fabaceae). Systematic Biology. 62: 424-38
Nakajima M, Boggs CL, Bailey S, et al. (2013) Fitness costs of butterfly oviposition on a lethal non-native plant in a mixed native and non-native plant community. Oecologia. 172: 823-32
Paape T, Zhou P, Branca A, et al. (2012) Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome. Genome Biology and Evolution. 4: 726-37
Branca A, Paape TD, Zhou P, et al. (2011) Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proceedings of the National Academy of Sciences of the United States of America. 108: E864-70
Paape T, Miyake T, Takebayashi N, et al. (2011) Evolutionary genetics of an S-like polymorphism in Papaveraceae with putative function in self-incompatibility. Plos One. 6: e23635
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