Mark T. Holder, Ph.D.

Evolution, Ecology, and Behavior University of Kansas, Lawrence, KS, United States 
"Mark Holder"


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David M. Hillis grad student 1995-2001 UT Austin
 (Using a complex model of sequence evolution to evaluate and improve phylogenetic methods.)
Paul O. Lewis post-doc 2001-2003 University of Connecticut
David Swofford post-doc 2003-2007 Florida State
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Sukumaran J, Holder MT, Knowles LL. (2021) Incorporating the speciation process into species delimitation. Plos Computational Biology. 17: e1008924
McTavish EJ, Sanchez Reyes LL, Holder MT. (2021) OpenTree: A Python package for Accessing and Analyzing data from the Open Tree of Life. Systematic Biology
Gibson MJS, Crawford DJ, Holder MT, et al. (2020) Genome-wide genotyping estimates mating system parameters and paternity in the island species Tolpis succulenta. American Journal of Botany. 107: 1189-1197
McTavish EJ, Holder M, Cranston K. (2018) Nurturing a sustainable Open Tree of Life Biodiversity Information Science and Standards. 2: e25727
Redelings BD, Holder MT. (2017) A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species. Peerj. 5: e3058
McTavish EJ, Steel M, Holder MT. (2015) Twisted trees and inconsistency of tree estimation when gaps are treated as missing data - The impact of model mis-specification in distance corrections. Molecular Phylogenetics and Evolution. 93: 289-95
McTavish EJ, Hinchliff CE, Allman JF, et al. (2015) Phylesystem: a git-based data store for community-curated phylogenetic estimates. Bioinformatics (Oxford, England)
Lewis PO, Holder MT, Swofford DL. (2015) Phycas: software for Bayesian phylogenetic analysis. Systematic Biology. 64: 525-31
Oaks JR, Sukumaran J, Esselstyn JA, et al. (2013) Evidence for climate-driven diversification? A caution for interpreting ABC inferences of simultaneous historical events. Evolution; International Journal of Organic Evolution. 67: 991-1010
Koch JM, Holder MT. (2012) An algorithm for calculating the probability of classes of data patterns on a genealogy. Plos Currents. 4: e4fd1286980c08
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