Alisha K. Holloway, Ph.D.
Affiliations: | University of California, San Francisco, San Francisco, CA |
Area:
Molecular evolution, computational biologyGoogle:
"Alisha Holloway"Parents
Sign in to add mentor| Michael F. Antolin | grad student | 1995-1997 | Colorado State | |
| James Jeffrey Bull | grad student | 2000-2004 | UT Austin | |
| (Polyploid origins, experimental evolution of gene duplicates, and duplication and divergence of reproductive genes.) | ||||
| David M. Hillis | grad student | 2000-2004 | UT Austin | |
| (Polyploid origins, experimental evolution of gene duplicates, and duplication and divergence of reproductive genes.) | ||||
| David Begun | post-doc | 2005-2008 | UC Davis | |
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Publications
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| Lind AL, Lai YYY, Mostovoy Y, et al. (2019) Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nature Ecology & Evolution. 3: 1241-1252 |
| Kostka D, Holloway AK, Pollard KS. (2018) Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages. Molecular Biology and Evolution |
| Luna-Zurita L, Stirnimann CU, Glatt S, et al. (2016) Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis. Cell |
| Holloway AK, Bruneau BG, Sukonnik T, et al. (2015) Accelerated evolution of enhancer hotspots in the mammal ancestor. Molecular Biology and Evolution |
| Kostka D, Friedrich T, Holloway AK, et al. (2015) motifDiverge: a model for assessing the statistical significance of gene regulatory motif divergence between two DNA sequences. Statistics and Its Interface. 8: 463-476 |
| Williams AG, Thomas S, Wyman SK, et al. (2014) RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. 83: 11.13.1-11.13.20 |
| Thomas S, Underwood JG, Tseng E, et al. (2014) Long-read sequencing of chicken transcripts and identification of new transcript isoforms. Plos One. 9: e94650 |
| Smith RP, Riesenfeld SJ, Holloway AK, et al. (2013) A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design. Genome Biology. 14: R72 |
| Shaffer HB, Minx P, Warren DE, et al. (2013) The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28 |
| Wamstad JA, Alexander JM, Truty RM, et al. (2012) Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell. 151: 206-20 |