Julian M. Catchen, Ph.D.
Affiliations: | 2009 | University of Oregon, Eugene, OR, United States |
Area:
Bioinformatics BiologyGoogle:
"Julian Catchen"Parents
Sign in to add mentor| John Conery | grad student | 2009 | University of Oregon | |
| (Automated methods to infer ancient homology and synteny.) | ||||
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Publications
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| Nazarizadeh M, Nováková M, Drábková M, et al. (2024) Highly resolved genome assembly and comparative transcriptome profiling reveal genes related to developmental stages of tapeworm . Proceedings. Biological Sciences. 291: 20232563 |
| Cheng CC, Rivera-Colón AG, Minhas BF, et al. (2023) Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie -The Closest Ancestral Proxy of Antarctic Cryonotothenioids. Genes. 14 |
| Minhas BF, Beck EA, Cheng CC, et al. (2023) Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes. Scientific Reports. 13: 6939 |
| Rivera-Colón AG, Rayamajhi N, Minhas BF, et al. (2023) Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish. Molecular Biology and Evolution. 40 |
| de Flamingh A, Rivera-Colón AG, Gnoske TP, et al. (2022) Numt Parser: automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera. The Journal of Heredity |
| Cerca J, Petersen B, Lazaro-Guevara JM, et al. (2022) The genomic basis of the plant island syndrome in Darwin's giant daisies. Nature Communications. 13: 3729 |
| Small CM, Healey HM, Currey MC, et al. (2022) Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes. Proceedings of the National Academy of Sciences of the United States of America. 119: e2119602119 |
| Rivera-Colón AG, Catchen J. (2022) Population Genomics Analysis with RAD, Reprised: Stacks 2. Methods in Molecular Biology (Clifton, N.J.). 2498: 99-149 |
| Cerca J, Rivera-Colón AG, Ferreira MS, et al. (2021) Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species. Peerj. 9: e10896 |
| Catchen J, Amores A, Bassham S. (2020) Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny. G3: Genes, Genomes, Genetics |