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Diego Mauricio Riaño-Pachón

Affiliations: 
2007-2010 Bioinformatics Max-Planck-Institut für molekulare Pflanzenphysiologie, Potsdam, Brandenburg, Germany 
 2010-2012 Ciencias Biológicas Universidad de Los Andes, Colombia 
 2013-2016 Laboratorio Nacional de Ciência e Tecnologia do Bioetanol 
 2017-2018 Biochemistry Universidade de São Paulo (USP), São Paulo, São Paulo, Brazil 
 2018- Center for Nuclear Energy in Agriculture Universidade de São Paulo (USP), São Paulo, São Paulo, Brazil 
Area:
computational biology, genomics, gene regulatory networks, phylogenetics
Website:
diriano.github.io
Google:
"Diego Riaño-Pachón"
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Parents

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Bernd Mueller-Roeber research assistant 2002-2005 Universitaet Potsdam
Bernd Mueller-Roeber grad student 2005-2008 Universitaet Potsdam
Birgit Kersten post-doc 2008-2010 Max Planck Institute for Molecular Plant Physiology
Dirk Walther post-doc 2008-2010 Max Planck Institute for Molecular Plant Physiology

Children

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Laura Natalia Gonzalez Garcia research assistant 2011-2012 Universidad de los Andes
David Alejandro Urbina Gomez research assistant 2011-2012 Universidad de los Andes
David Alejandro Urbina Gomez grad student 2011- Universidad de los Andes
Renato Augusto Corrêa grad student 2015- Universidade Estadual de Campinas, UNICAMP, Brasil.
Lucas Lopes grad student 2015- Universidade de São Paulo
Francisco J. Buitrago Florez grad student 2010-2011 Universidad de los Andes
Eric Juan Carlos Galvez Bobadilla grad student 2011-2012 Universidad de los Andes
Andres Felipe Vasquez grad student 2011-2012 Universidad de los Andes
Laura Natalia Gonzalez Garcia grad student 2012-2014 Universidad de Los Andes, Colombia
Ana Catalina Lara grad student 2012-2019 Universidad de Los Andes, Colombia
Ximena Carolina Perez grad student 2013-2019 Universidad Nacional de Colombia

Collaborators

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Flavia Vischi Winck collaborator 2007- Universidade de São Paulo
Erich Grotewold collaborator 2010- Universidad de los Andes
Bernd Mueller-Roeber collaborator 2010- USP
Silvia Restrepo Restrepo collaborator 2010- Universidad de los Andes
Gustavo Henrique Goldman collaborator 2013- Universidade de São Paulo (Ribeirão Preto)
Paulo Arruda collaborator 2017- Universidade Estadual de Campinas (Plant Biology Tree)
Fabio Marcio Squina collaborator 2013-2017 Laboratorio Nacional de Ciência e Tecnologia do Bioetanol
BETA: Related publications

Publications

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Riaño-Pachón DM, Espitia-Navarro HF, Riascos JJ, et al. (2022) Modern Approaches for Transcriptome Analyses in Plants. Advances in Experimental Medicine and Biology. 1346: 11-50
González-Sayer S, Oggenfuss U, García I, et al. (2022) High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees. Genetics and Molecular Biology. 45: e50510051
Zuvanov L, Basso Garcia AL, Correr FH, et al. (2021) The experience of teaching introductory programming skills to bioscientists in Brazil. Plos Computational Biology. 17: e1009534
Busso-Lopes AF, Carnielli CM, Winck FV, et al. (2021) A reductionist approach using primary and metastatic cell-derived extracellular vesicles reveals hub proteins associated with oral cancer prognosis. Molecular & Cellular Proteomics : McP. 100118
Cunha AC, Santos RACD, Riaño-Pachon DM, et al. (2020) Draft genome sequence of Wickerhamomyces anomalus LBCM1105, isolated from cachaça fermentation. Genetics and Molecular Biology. 43: e20190122
Hurtado FMM, Pinto MS, Oliveira PN, et al. (2019) Analysis of NAC Domain Transcription Factor Genes of L.f. Involved in Secondary Cell Wall Deposition. Genes. 11
Castro JC, Valdés I, Gonzalez-García LN, et al. (2019) Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans. Theoretical Biology & Medical Modelling. 16: 7
Borin GP, Carazzolle MF, Dos Santos RAC, et al. (2018) Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in RUT-30. Frontiers in Bioengineering and Biotechnology. 6: 151
Borin GP, Sanchez CC, de Santana ES, et al. (2017) Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei. Bmc Genomics. 18: 501
Mandelli F, Couger MB, Paixão DAA, et al. (2017) Thermal adaptation strategies of the extremophile bacterium Thermus filiformis based on multi-omics analysis. Extremophiles : Life Under Extreme Conditions
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