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Lior Pachter

Affiliations: 
Electrical Engineering and Computer Science University of California, Berkeley, Berkeley, CA, United States 
Area:
Biosystems & Computational Biology (BIO); Artificial Intelligence (AI)
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"Lior Pachter"
Bio:

http://math.berkeley.edu/~lpachter/

Cross-listing: Computer Science Tree

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Parents

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Bonnie Berger grad student 1994-1999 MIT (Computational Biology Tree)

Children

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Ali Sina Booeshaghi grad student Caltech
Lynn Yi grad student Caltech (Chemistry Tree)
Eric H. Kuo grad student 2005 UC Berkeley
Sourav Chatterji grad student 2006 UC Berkeley
Colin N. Dewey grad student 2006 UC Berkeley
Ariel S. Schwartz grad student 2007 UC Berkeley
Peter M. Huggins grad student 2008 UC Berkeley
Radu H. Mihaescu grad student 2008 UC Berkeley
Aaron D. Kleinman grad student 2012 UC Berkeley
Meromit Singer grad student 2012 UC Berkeley
Robert Tunney grad student 2018 (FlyTree)
Bo Li post-doc 2013- UC Berkeley (Computational Biology Tree)

Collaborators

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Richard E. Lenski collaborator n/a
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Publications

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Gorin G, Vastola JJ, Pachter L. (2023) Studying stochastic systems biology of the cell with single-cell genomics data. Biorxiv : the Preprint Server For Biology
Booeshaghi AS, Chen X, Pachter L. (2023) A machine-readable specification for genomics assays. Biorxiv : the Preprint Server For Biology
Gorin G, Pachter L. (2022) Length biases in single-cell RNA sequencing of pre-mRNA. Biophysical Reports. 3: 100097
Melsted P, Booeshaghi AS, Liu L, et al. (2021) Modular, efficient and constant-memory single-cell RNA-seq preprocessing. Nature Biotechnology
Booeshaghi AS, Pachter L. (2021) Normalization of single-cell RNA-seq counts by log(x + 1)* or log(1 + x). Bioinformatics (Oxford, England)
Booeshaghi AS, Lubock NB, Cooper AR, et al. (2020) Reliable and accurate diagnostics from highly multiplexed sequencing assays. Scientific Reports. 10: 21759
Gorin G, Pachter L. (2020) Special function methods for bursty models of transcription. Physical Review. E. 102: 022409
Bloom JS, Jones EM, Gasperini M, et al. (2020) Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing. Medrxiv : the Preprint Server For Health Sciences
Koromila T, Gao F, Iwasaki Y, et al. (2020) Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos. Elife. 9
Mao S, Pachter L, Tse D, et al. (2020) RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition. Plos One. 15: e0232946
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