Lior Pachter

Electrical Engineering and Computer Science University of California, Berkeley, Berkeley, CA 
Biosystems & Computational Biology (BIO); Artificial Intelligence (AI)
"Lior Pachter"

Cross-listing: Computer Science Tree


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Bonnie Berger grad student 1994-1999 MIT (Computational Biology Tree)


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Ali Sina Booeshaghi grad student Caltech
Eric H. Kuo grad student 2005 UC Berkeley
Sourav Chatterji grad student 2006 UC Berkeley
Colin N. Dewey grad student 2006 UC Berkeley
Ariel S. Schwartz grad student 2007 UC Berkeley
Peter M. Huggins grad student 2008 UC Berkeley
Radu H. Mihaescu grad student 2008 UC Berkeley
Aaron D. Kleinman grad student 2012 UC Berkeley
Meromit Singer grad student 2012 UC Berkeley
Robert Tunney grad student 2018 (FlyTree)
Bo Li post-doc 2013- UC Berkeley (Computational Biology Tree)
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Booeshaghi AS, Pachter L. (2021) Normalization of single-cell RNA-seq counts by log(x + 1)* or log(1 + x). Bioinformatics (Oxford, England)
Booeshaghi AS, Lubock NB, Cooper AR, et al. (2020) Reliable and accurate diagnostics from highly multiplexed sequencing assays. Scientific Reports. 10: 21759
Bloom JS, Jones EM, Gasperini M, et al. (2020) Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing. Medrxiv : the Preprint Server For Health Sciences
Gehring J, Hwee Park J, Chen S, et al. (2019) Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins. Nature Biotechnology
Booeshaghi AS, Beltrame EDV, Bannon D, et al. (2019) Principles of open source bioinstrumentation applied to the poseidon syringe pump system. Scientific Reports. 9: 12385
Tunney R, McGlincy NJ, Graham ME, et al. (2018) Accurate design of translational output by a neural network model of ribosome distribution. Nature Structural & Molecular Biology
Ntranos V, Kamath GM, Zhang JM, et al. (2016) Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts. Genome Biology. 17: 112
Bray NL, Pimentel H, Melsted P, et al. (2016) Near-optimal probabilistic RNA-seq quantification. Nature Biotechnology
Mittal A, Pachter L, Nelson JL, et al. (2015) Pregnancy-Induced Changes in Systemic Gene Expression among Healthy Women and Women with Rheumatoid Arthritis. Plos One. 10: e0145204
Hanchate NK, Kondoh K, Lu Z, et al. (2015) Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis. Science (New York, N.Y.)
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