Casey W. Dunn, Ph.D.

Ecology and Evolutionary Biology Yale University, New Haven, CT 
 Ecology and Evolutionary Biology Brown University, Providence, RI 
"Casey Dunn"


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Günter Wagner grad student 2005 Yale
 (The colony-level evolution and development of the siphonophora (Cnidaria, Hydrozoa).)


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Alejandro Damian Serrano grad student 2015-2021 Yale
Jasmine Lianne Mah grad student 2018-2024 Yale (Marine Ecology Tree)
Lauren Mellenthin grad student 2019-2025 Yale
Namrata Ahuja grad student 2021-2027 Yale
Sam H. Church post-doc 2021- Yale (FlyTree)
Natasha Picciani post-doc 2020-2022 Yale
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Church SH, Mah JL, Dunn CW. (2024) Integrating phylogenies into single-cell RNA sequencing analysis allows comparisons across species, genes, and cells. Plos Biology. 22: e3002633
Ahuja N, Cao X, Schultz DT, et al. (2024) Giants among Cnidaria: large nuclear genomes and rearranged mitochondrial genomes in siphonophores. Genome Biology and Evolution
Mah JL, Dunn CW. (2024) Cell type evolution reconstruction across species through cell phylogenies of single-cell RNA sequencing data. Nature Ecology & Evolution
Church SH, Mah JL, Wagner G, et al. (2023) Normalizing need not be the norm: count-based math for analyzing single-cell data. Theory in Biosciences = Theorie in Den Biowissenschaften
Church SH, Munro C, Dunn CW, et al. (2023) The evolution of ovary-biased gene expression in Hawaiian Drosophila. Plos Genetics. 19: e1010607
Munro C, Zapata F, Howison M, et al. (2022) Evolution of Gene Expression across Species and Specialized Zooids in Siphonophora. Molecular Biology and Evolution. 39
Li Y, Steenwyk JL, Chang Y, et al. (2021) A genome-scale phylogeny of the kingdom Fungi. Current Biology : Cb
Smith SD, Pennell MW, Dunn CW, et al. (2020) Phylogenetics is the New Genetics (for Most of Biodiversity). Trends in Ecology & Evolution. 35: 415-425
Munro C, Vue Z, Behringer RR, et al. (2019) Morphology and development of the Portuguese man of war, Physalia physalis. Scientific Reports. 9: 15522
Wang LG, Lam TT, Xu S, et al. (2019) treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. Molecular Biology and Evolution
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