Parents
Sign in to add mentor| Nicole T. Perna | grad student | 2001-2006 | UW Madison | |
| (Computational analysis of genome evolution.) | ||||
| Jonathan A. Eisen | post-doc | UC Davis | ||
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Publications
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| Meyer F, Fritz A, Deng ZL, et al. (2022) Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods. 19: 429-440 |
| Gaio D, Anantanawat K, To J, et al. (2022) Hackflex: low-cost, high-throughput, Illumina Nextera Flex library construction. Microbial Genomics. 8 |
| DeMaere MZ, Darling AE. (2021) qc3C: Reference-free quality control for Hi-C sequencing data. Plos Computational Biology. 17: e1008839 |
| Gaio D, DeMaere MZ, Anantanawat K, et al. (2021) Post-weaning shifts in microbiome composition and metabolism revealed by over 25 000 pig gut metagenome-assembled genomes. Microbial Genomics. 7 |
| Quince C, Nurk S, Raguideau S, et al. (2021) STRONG: metagenomics strain resolution on assembly graphs. Genome Biology. 22: 214 |
| Vicedomini R, Quince C, Darling AE, et al. (2021) Strainberry: automated strain separation in low-complexity metagenomes using long reads. Nature Communications. 12: 4485 |
| Hastak P, Fourment M, Darling AE, et al. (2020) ST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex. Emerging Microbes & Infections. 1-35 |
| Zingali T, Reid CJ, Chapman TA, et al. (2020) Whole Genome Sequencing Analysis of Porcine Faecal Commensal Carrying Class 1 Integrons from Sows and Their Offspring. Microorganisms. 8 |
| Yasir M, Turner AK, Bastkowski S, et al. (2020) TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance. Genome Research |
| Cooke I, Mead O, Whalen C, et al. (2019) Molecular techniques and their limitations shape our view of the holobiont. Zoology (Jena, Germany). 137: 125695 |