Katherine S. Pollard, PhD

Gladstone Institute University of California, San Francisco, San Francisco, CA 
Evolutionary Genomics, Statistics
"Katherine Pollard"


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Sandrine Dudoit grad student 1998-2003 UC Berkeley
Mark J. van der Laan grad student 1998-2003 UC Berkeley (MathTree)
 (Computationally intensive statistical methods for analysis of gene expression data.)
David Henry Haussler post-doc 2003-2005 UC Santa Cruz (Computational Biology Tree)
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Whalen S, Schreiber J, Noble WS, et al. (2021) Navigating the pitfalls of applying machine learning in genomics. Nature Reviews. Genetics
Bradley PH, Pollard KS. (2020) Building a chemical blueprint for human blood. Nature
Damas J, Hughes GM, Keough KC, et al. (2020) Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proceedings of the National Academy of Sciences of the United States of America
Almeida A, Nayfach S, Boland M, et al. (2020) A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature Biotechnology
Gordon MG, Inoue F, Martin B, et al. (2020) lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements. Nature Protocols
Markenscoff-Papadimitriou E, Whalen S, Przytycki P, et al. (2020) A Chromatin Accessibility Atlas of the Developing Human Telencephalon. Cell
Hoarfrost A, Nayfach S, Ladau J, et al. (2019) Global ecotypes in the ubiquitous marine clade SAR86. The Isme Journal
Bradley PH, Pollard KS. (2019) phylogenize: correcting for phylogeny reveals genes associated with microbial distributions. Bioinformatics (Oxford, England)
Carmody RN, Bisanz JE, Bowen BP, et al. (2019) Cooking shapes the structure and function of the gut microbiome. Nature Microbiology
Keough KC, Lyalina S, Olvera MP, et al. (2019) AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design. Genome Biology. 20: 167
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