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| Hernández IM, Dehouck Y, Bastolla U, et al. (2023) Predicting protein stability changes upon mutation using a simple orientational potential. Bioinformatics (Oxford, England). 39 |
| Del Amparo R, González-Vázquez LD, Rodríguez-Moure L, et al. (2022) Consequences of Genetic Recombination on Protein Folding Stability. Journal of Molecular Evolution. 91: 33-45 |
| Pascual-García A, Arenas M, Bastolla U. (2019) The Molecular Clock in the Evolution of Protein Structures. Systematic Biology |
| Bastolla U, Arenas M. (2019) The Influence of Protein Stability on Sequence Evolution: Applications to Phylogenetic Inference. Methods in Molecular Biology (Clifton, N.J.). 1851: 215-231 |
| Jiménez-Santos MJ, Arenas M, Bastolla U. (2018) Influence of mutation bias and hydrophobicity on the substitution rates and sequence entropies of protein evolution. Peerj. 6: e5549 |
| Jimenez MJ, Arenas M, Bastolla U. (2017) Substitution rates predicted by stability-constrained models of protein evolution are not consistent with empirical data. Molecular Biology and Evolution |
| Arenas M, Weber CC, Liberles DA, et al. (2017) ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability. Systematic Biology |
| Arenas M, Sánchez-Cobos A, Bastolla U. (2015) Maximum-Likelihood Phylogenetic Inference with Selection on Protein Folding Stability. Molecular Biology and Evolution. 32: 2195-207 |
| Treviño MA, García-Mayoral MF, Jiménez MÁ, et al. (2014) Emergence of structure through protein-protein interactions and pH changes in dually predicted coiled-coil and disordered regions of centrosomal proteins. Biochimica Et Biophysica Acta. 1844: 1808-19 |
| Arenas M, Dos Santos HG, Posada D, et al. (2013) Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinformatics (Oxford, England). 29: 3020-8 |