| Year |
Citation |
Score |
| 2025 |
Chevy ET, Min J, Caudill V, Champer SE, Haller BC, Rehmann CT, Smith CCR, Tittes S, Messer PW, Kern AD, Ramachandran S, Ralph PL. Population Genetics Meets Ecology: A Guide to Individual-Based Simulations in Continuous Landscapes. Ecology and Evolution. 15: e71098. PMID 40235724 DOI: 10.1002/ece3.71098 |
0.423 |
|
| 2025 |
Gower G, Pope NS, Rodrigues MF, Tittes S, Tran LN, Alam O, Cavassim MIA, Fields PD, Haller BC, Huang X, Jeffrey B, Korfmann K, Kyriazis CC, Min J, Rebollo I, ... ... Ralph PL, et al. Accessible, realistic genome simulation with selection using stdpopsim. Biorxiv : the Preprint Server For Biology. PMID 40166307 DOI: 10.1101/2025.03.23.644823 |
0.727 |
|
| 2025 |
Rehmann CT, Small ST, Ralph PL, Kern AD. Sweeps in space: leveraging geographic data to identify beneficial alleles in . Biorxiv : the Preprint Server For Biology. PMID 39975147 DOI: 10.1101/2025.02.07.637123 |
0.701 |
|
| 2024 |
Caudill V, Ralph P. Genetic Architecture, Spatial Heterogeneity, and the Arms Race between Newts and Snakes: Exploring Coevolution with Simulations. The American Naturalist. 205: 184-202. PMID 39913933 DOI: 10.1086/733456 |
0.326 |
|
| 2024 |
Smith CCR, Patterson G, Ralph PL, Kern AD. Estimation of spatial demographic maps from polymorphism data using a neural network. Molecular Ecology Resources. e14005. PMID 39152666 DOI: 10.1111/1755-0998.14005 |
0.708 |
|
| 2024 |
Chevy ET, Min J, Caudill V, Champer SE, Haller BC, Rehmann CT, Smith CCR, Tittes S, Messer PW, Kern AD, Ramachandran S, Ralph PL. Population genetics meets ecology: a guide to individual-based simulations in continuous landscapes. Biorxiv : the Preprint Server For Biology. PMID 39091875 DOI: 10.1101/2024.07.24.604988 |
0.711 |
|
| 2024 |
Smith CCR, Patterson G, Ralph PL, Kern AD. Estimation of spatial demographic maps from polymorphism data using a neural network. Biorxiv : the Preprint Server For Biology. PMID 38559192 DOI: 10.1101/2024.03.15.585300 |
0.708 |
|
| 2024 |
Parsons TL, Ralph PL. Large effects and the infinitesimal model. Theoretical Population Biology. 156: 117-129. PMID 38423480 DOI: 10.1016/j.tpb.2024.02.009 |
0.342 |
|
| 2024 |
Rodrigues MF, Kern AD, Ralph PL. Shared evolutionary processes shape landscapes of genomic variation in the great apes. Genetics. PMID 38242701 DOI: 10.1093/genetics/iyae006 |
0.806 |
|
| 2024 |
Rehmann CT, Ralph PL, Kern AD. Evaluating evidence for co-geography in the Anopheles-Plasmodium host-parasite system. G3 (Bethesda, Md.). PMID 38230808 DOI: 10.1093/g3journal/jkae008 |
0.664 |
|
| 2023 |
Petr M, Haller BC, Ralph PL, Racimo F. : a framework for spatio-temporal population genomic simulations on geographic landscapes. Peer Community Journal. 3. PMID 38984034 DOI: 10.24072/pcjournal.354 |
0.469 |
|
| 2023 |
Caudill V, Ralph P. Genetic architecture, spatial heterogeneity, and the coevolutionary arms race between newts and snakes. Biorxiv : the Preprint Server For Biology. PMID 38106105 DOI: 10.1101/2023.12.07.570693 |
0.349 |
|
| 2023 |
Rehmann CT, Ralph PL, Kern AD. Evaluating evidence for co-geography in the Anopheles Plasmodium host-parasite system. Biorxiv : the Preprint Server For Biology. PMID 37503196 DOI: 10.1101/2023.07.17.549405 |
0.674 |
|
| 2023 |
Lauterbur ME, Cavassim MIA, Gladstein AL, Gower G, Pope NS, Tsambos G, Adrion J, Belsare S, Biddanda A, Caudill V, Cury J, Echevarria I, Haller BC, Hasan AR, Huang X, ... ... Ralph PL, et al. Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations. Elife. 12. PMID 37342968 DOI: 10.7554/eLife.84874 |
0.781 |
|
| 2023 |
Etheridge AM, Kurtz TG, Letter I, Ralph PL, Lung TTH. Looking forwards and backwards: dynamics and genealogies of locally regulated populations. Arxiv. PMID 37292478 |
0.329 |
|
| 2023 |
Smith CCR, Tittes S, Ralph PL, Kern AD. Dispersal inference from population genetic variation using a convolutional neural network. Genetics. PMID 37052957 DOI: 10.1093/genetics/iyad068 |
0.716 |
|
| 2023 |
Rodrigues MF, Kern AD, Ralph PL. Shared evolutionary processes shape landscapes of genomic variation in the great apes. Biorxiv : the Preprint Server For Biology. PMID 36798346 DOI: 10.1101/2023.02.07.527547 |
0.804 |
|
| 2021 |
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschmar WW, ... ... Ralph PL, et al. Efficient ancestry and mutation simulation with msprime 1.0. Genetics. PMID 34897427 DOI: 10.1093/genetics/iyab229 |
0.76 |
|
| 2021 |
Schiffman JS, Ralph PL. System drift and speciation. Evolution; International Journal of Organic Evolution. PMID 34529267 DOI: 10.1111/evo.14356 |
0.394 |
|
| 2021 |
Kasimatis KR, Abraham A, Ralph PL, Kern AD, Capra JA, Phillips PC. Evaluating human autosomal loci for sexually antagonistic viability selection in two large biobanks. Genetics. 217: 1-10. PMID 33683357 DOI: 10.1093/genetics/iyaa015 |
0.635 |
|
| 2020 |
Verma A, Hughes DJ, Harwood DT, Suggett DJ, Ralph PJ, Murray SA. Functional significance of phylogeographic structure in a toxic benthic marine microbial eukaryote over a latitudinal gradient along the East Australian Current. Ecology and Evolution. 10: 6257-6273. PMID 32724512 DOI: 10.1002/ece3.6358 |
0.386 |
|
| 2020 |
George J, Kahlke T, Abbriano RM, Kuzhiumparambil U, Ralph PJ, Fabris M. Metabolic Engineering Strategies in Diatoms Reveal Unique Phenotypes and Genetic Configurations With Implications for Algal Genetics and Synthetic Biology. Frontiers in Bioengineering and Biotechnology. 8: 513. PMID 32582656 DOI: 10.3389/fbioe.2020.00513 |
0.32 |
|
| 2020 |
Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, ... ... Ralph PL, et al. A community-maintained standard library of population genetic models. Elife. 9. PMID 32573438 DOI: 10.7554/Elife.54967 |
0.713 |
|
| 2020 |
Battey CJ, Ralph PL, Kern AD. Predicting geographic location from genetic variation with deep neural networks. Elife. 9. PMID 32511092 DOI: 10.7554/eLife.54507 |
0.723 |
|
| 2020 |
Ralph P, Thornton K, Kelleher J. Efficiently Summarizing Relationships in Large Samples: A General Duality Between Statistics of Genealogies and Genomes. Genetics. PMID 32357960 DOI: 10.1534/Genetics.120.303253 |
0.471 |
|
| 2020 |
Battey CJ, Ralph PL, Kern AD. Space Is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data. Genetics. PMID 32209569 DOI: 10.1534/genetics.120.303143 |
0.743 |
|
| 2019 |
Galloway J, Cresko WA, Ralph P. A Few Stickleback Suffice for the Transport of Alleles to New Lakes. G3 (Bethesda, Md.). PMID 31801796 DOI: 10.1534/G3.119.400564 |
0.542 |
|
| 2019 |
Kasimatis KR, Ralph PL, Phillips PC. Limits to Genomic Divergence Under Sexually Antagonistic Selection. G3 (Bethesda, Md.). PMID 31530636 DOI: 10.1534/G3.119.400711 |
0.341 |
|
| 2019 |
Stankowski S, Chase MA, Fuiten AM, Rodrigues MF, Ralph PL, Streisfeld MA. Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers. Plos Biology. 17: e3000391. PMID 31339877 DOI: 10.1371/Journal.Pbio.3000391 |
0.711 |
|
| 2019 |
Ralph PL. An empirical approach to demographic inference with genomic data. Theoretical Population Biology. PMID 30978307 DOI: 10.1016/j.tpb.2019.03.005 |
0.485 |
|
| 2018 |
Haller BC, Galloway J, Kelleher J, Messer PW, Ralph PL. Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes. Molecular Ecology Resources. PMID 30565882 DOI: 10.1111/1755-0998.12968 |
0.435 |
|
| 2018 |
Li H, Ralph PL. Local PCA Shows How the Effect of Population Structure Differs Along the Genome. Genetics. PMID 30459280 DOI: 10.1534/genetics.118.301747 |
0.427 |
|
| 2018 |
Kelleher J, Thornton KR, Ashander J, Ralph PL. Efficient pedigree recording for fast population genetics simulation. Plos Computational Biology. 14: e1006581. PMID 30383757 DOI: 10.1371/journal.pcbi.1006581 |
0.461 |
|
| 2018 |
Bradburd GS, Coop GM, Ralph PL. Inferring Continuous and Discrete Population Genetic Structure Across Space. Genetics. PMID 30026187 DOI: 10.1534/genetics.118.301333 |
0.806 |
|
| 2017 |
Bay RA, Rose N, Barrett R, Bernatchez L, Ghalambor CK, Lasky JR, Brem RB, Palumbi SR, Ralph P. Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures. The American Naturalist. 189: 463-473. PMID 28410032 DOI: 10.1086/691233 |
0.473 |
|
| 2016 |
Crisci JL, Dean MD, Ralph P. Adaptation in isolated populations: when does it happen and when can we tell? Molecular Ecology. PMID 27297514 DOI: 10.1111/Mec.13729 |
0.542 |
|
| 2016 |
Sedghifar A, Brandvain Y, Ralph P. Beyond clines: lineages and haplotype blocks in hybrid zones. Molecular Ecology. PMID 27148805 DOI: 10.1111/Mec.13677 |
0.76 |
|
| 2016 |
Chiang CW, Ralph P, Novembre J. Conflation of Short Identity-by-Descent Segments Bias their Inferred Length Distribution. G3 (Bethesda, Md.). PMID 26935417 DOI: 10.1534/G3.116.027581 |
0.31 |
|
| 2016 |
Bradburd GS, Ralph PL, Coop GM. A Spatial Framework for Understanding Population Structure and Admixture. Plos Genetics. 12: e1005703. PMID 26771578 DOI: 10.1371/journal.pgen.1005703 |
0.802 |
|
| 2015 |
Ralph PL, Coop G. The Role of Standing Variation in Geographic Convergent Adaptation. The American Naturalist. 186: S5-S23. PMID 26656217 DOI: 10.1086/682948 |
0.69 |
|
| 2015 |
Ralph PL, Coop G. Convergent Evolution During Local Adaptation to Patchy Landscapes. Plos Genetics. 11: e1005630. PMID 26571125 DOI: 10.1371/Journal.Pgen.1005630 |
0.678 |
|
| 2015 |
Sedghifar A, Brandvain Y, Ralph P, Coop G. The Spatial Mixing of Genomes in Secondary Contact Zones. Genetics. 201: 243-61. PMID 26205988 DOI: 10.1534/Genetics.115.179838 |
0.756 |
|
| 2015 |
Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J. Independent Molecular Basis of Convergent Highland Adaptation in Maize. Genetics. PMID 26078279 DOI: 10.1534/Genetics.115.178327 |
0.529 |
|
| 2014 |
Dines JP, Otárola-Castillo E, Ralph P, Alas J, Daley T, Smith AD, Dean MD. Sexual selection targets cetacean pelvic bones. Evolution; International Journal of Organic Evolution. 68: 3296-306. PMID 25186496 DOI: 10.1111/Evo.12516 |
0.309 |
|
| 2013 |
Bradburd GS, Ralph PL, Coop GM. Disentangling the effects of geographic and ecological isolation on genetic differentiation. Evolution; International Journal of Organic Evolution. 67: 3258-73. PMID 24102455 DOI: 10.1111/evo.12193 |
0.809 |
|
| 2013 |
Ralph P, Coop G. The geography of recent genetic ancestry across Europe. Plos Biology. 11: e1001555. PMID 23667324 DOI: 10.1371/Journal.Pbio.1001555 |
0.746 |
|
| 2012 |
Boettiger C, Coop G, Ralph P. Is your phylogeny informative? Measuring the power of comparative methods. Evolution; International Journal of Organic Evolution. 66: 2240-51. PMID 22759299 DOI: 10.1111/J.1558-5646.2011.01574.X |
0.626 |
|
| 2012 |
Coop G, Ralph P. Patterns of neutral diversity under general models of selective sweeps. Genetics. 192: 205-24. PMID 22714413 DOI: 10.1534/Genetics.112.141861 |
0.663 |
|
| 2011 |
Ulstrup KE, Kühl M, van Oppen MJH, Cooper TF, Ralph PJ. Variation in photosynthesis and respiration in geographically distinct populations of two reef-building coral species Aquatic Biology. 12: 241-248. DOI: 10.3354/ab00338 |
0.324 |
|
| 2010 |
Ralph P, Coop G. Parallel adaptation: one or many waves of advance of an advantageous allele? Genetics. 186: 647-68. PMID 20660645 DOI: 10.1534/Genetics.110.119594 |
0.674 |
|
| 2010 |
Császár NB, Ralph PJ, Frankham R, Berkelmans R, van Oppen MJ. Estimating the potential for adaptation of corals to climate warming. Plos One. 5: e9751. PMID 20305781 DOI: 10.1371/journal.pone.0009751 |
0.353 |
|
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