Peter Ralph, PhD - Publications

University of Southern California, Los Angeles, CA, United States 

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Smith CCR, Patterson G, Ralph PL, Kern AD. Estimation of spatial demographic maps from polymorphism data using a neural network. Biorxiv : the Preprint Server For Biology. PMID 38559192 DOI: 10.1101/2024.03.15.585300  0.706
2024 Parsons TL, Ralph PL. Large effects and the infinitesimal model. Theoretical Population Biology. 156: 117-129. PMID 38423480 DOI: 10.1016/j.tpb.2024.02.009  0.34
2024 Rodrigues MF, Kern AD, Ralph PL. Shared evolutionary processes shape landscapes of genomic variation in the great apes. Genetics. PMID 38242701 DOI: 10.1093/genetics/iyae006  0.735
2024 Rehmann CT, Ralph PL, Kern AD. Evaluating evidence for co-geography in the Anopheles-Plasmodium host-parasite system. G3 (Bethesda, Md.). PMID 38230808 DOI: 10.1093/g3journal/jkae008  0.667
2023 Caudill V, Ralph P. Genetic architecture, spatial heterogeneity, and the coevolutionary arms race between newts and snakes. Biorxiv : the Preprint Server For Biology. PMID 38106105 DOI: 10.1101/2023.12.07.570693  0.337
2023 Rehmann CT, Ralph PL, Kern AD. Evaluating evidence for co-geography in the Anopheles Plasmodium host-parasite system. Biorxiv : the Preprint Server For Biology. PMID 37503196 DOI: 10.1101/2023.07.17.549405  0.677
2023 Lauterbur ME, Cavassim MIA, Gladstein AL, Gower G, Pope NS, Tsambos G, Adrion J, Belsare S, Biddanda A, Caudill V, Cury J, Echevarria I, Haller BC, Hasan AR, Huang X, ... ... Ralph PL, et al. Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations. Elife. 12. PMID 37342968 DOI: 10.7554/eLife.84874  0.772
2023 Etheridge AM, Kurtz TG, Letter I, Ralph PL, Lung TTH. Looking forwards and backwards: dynamics and genealogies of locally regulated populations. Arxiv. PMID 37292478  0.333
2023 Smith CCR, Tittes S, Ralph PL, Kern AD. Dispersal inference from population genetic variation using a convolutional neural network. Genetics. PMID 37052957 DOI: 10.1093/genetics/iyad068  0.718
2023 Rodrigues MF, Kern AD, Ralph PL. Shared evolutionary processes shape landscapes of genomic variation in the great apes. Biorxiv : the Preprint Server For Biology. PMID 36798346 DOI: 10.1101/2023.02.07.527547  0.799
2021 Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschmar WW, ... ... Ralph PL, et al. Efficient ancestry and mutation simulation with msprime 1.0. Genetics. PMID 34897427 DOI: 10.1093/genetics/iyab229  0.757
2021 Schiffman JS, Ralph PL. System drift and speciation. Evolution; International Journal of Organic Evolution. PMID 34529267 DOI: 10.1111/evo.14356  0.388
2021 Kasimatis KR, Abraham A, Ralph PL, Kern AD, Capra JA, Phillips PC. Evaluating human autosomal loci for sexually antagonistic viability selection in two large biobanks. Genetics. 217: 1-10. PMID 33683357 DOI: 10.1093/genetics/iyaa015  0.637
2020 Verma A, Hughes DJ, Harwood DT, Suggett DJ, Ralph PJ, Murray SA. Functional significance of phylogeographic structure in a toxic benthic marine microbial eukaryote over a latitudinal gradient along the East Australian Current. Ecology and Evolution. 10: 6257-6273. PMID 32724512 DOI: 10.1002/ece3.6358  0.38
2020 George J, Kahlke T, Abbriano RM, Kuzhiumparambil U, Ralph PJ, Fabris M. Metabolic Engineering Strategies in Diatoms Reveal Unique Phenotypes and Genetic Configurations With Implications for Algal Genetics and Synthetic Biology. Frontiers in Bioengineering and Biotechnology. 8: 513. PMID 32582656 DOI: 10.3389/fbioe.2020.00513  0.319
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, ... ... Ralph PL, et al. A community-maintained standard library of population genetic models. Elife. 9. PMID 32573438 DOI: 10.7554/Elife.54967  0.714
2020 Battey CJ, Ralph PL, Kern AD. Predicting geographic location from genetic variation with deep neural networks. Elife. 9. PMID 32511092 DOI: 10.7554/eLife.54507  0.726
2020 Ralph P, Thornton K, Kelleher J. Efficiently Summarizing Relationships in Large Samples: A General Duality Between Statistics of Genealogies and Genomes. Genetics. PMID 32357960 DOI: 10.1534/Genetics.120.303253  0.469
2020 Battey CJ, Ralph PL, Kern AD. Space Is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data. Genetics. PMID 32209569 DOI: 10.1534/genetics.120.303143  0.745
2019 Galloway J, Cresko WA, Ralph P. A Few Stickleback Suffice for the Transport of Alleles to New Lakes. G3 (Bethesda, Md.). PMID 31801796 DOI: 10.1534/G3.119.400564  0.539
2019 Kasimatis KR, Ralph PL, Phillips PC. Limits to Genomic Divergence Under Sexually Antagonistic Selection. G3 (Bethesda, Md.). PMID 31530636 DOI: 10.1534/G3.119.400711  0.335
2019 Stankowski S, Chase MA, Fuiten AM, Rodrigues MF, Ralph PL, Streisfeld MA. Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers. Plos Biology. 17: e3000391. PMID 31339877 DOI: 10.1371/Journal.Pbio.3000391  0.708
2019 Ralph PL. An empirical approach to demographic inference with genomic data. Theoretical Population Biology. PMID 30978307 DOI: 10.1016/j.tpb.2019.03.005  0.485
2018 Haller BC, Galloway J, Kelleher J, Messer PW, Ralph PL. Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes. Molecular Ecology Resources. PMID 30565882 DOI: 10.1111/1755-0998.12968  0.429
2018 Li H, Ralph PL. Local PCA Shows How the Effect of Population Structure Differs Along the Genome. Genetics. PMID 30459280 DOI: 10.1534/genetics.118.301747  0.425
2018 Kelleher J, Thornton KR, Ashander J, Ralph PL. Efficient pedigree recording for fast population genetics simulation. Plos Computational Biology. 14: e1006581. PMID 30383757 DOI: 10.1371/journal.pcbi.1006581  0.454
2018 Bradburd GS, Coop GM, Ralph PL. Inferring Continuous and Discrete Population Genetic Structure Across Space. Genetics. PMID 30026187 DOI: 10.1534/genetics.118.301333  0.807
2017 Bay RA, Rose N, Barrett R, Bernatchez L, Ghalambor CK, Lasky JR, Brem RB, Palumbi SR, Ralph P. Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures. The American Naturalist. 189: 463-473. PMID 28410032 DOI: 10.1086/691233  0.468
2016 Crisci JL, Dean MD, Ralph P. Adaptation in isolated populations: when does it happen and when can we tell? Molecular Ecology. PMID 27297514 DOI: 10.1111/Mec.13729  0.534
2016 Sedghifar A, Brandvain Y, Ralph P. Beyond clines: lineages and haplotype blocks in hybrid zones. Molecular Ecology. PMID 27148805 DOI: 10.1111/Mec.13677  0.751
2016 Chiang CW, Ralph P, Novembre J. Conflation of Short Identity-by-Descent Segments Bias their Inferred Length Distribution. G3 (Bethesda, Md.). PMID 26935417 DOI: 10.1534/G3.116.027581  0.308
2016 Bradburd GS, Ralph PL, Coop GM. A Spatial Framework for Understanding Population Structure and Admixture. Plos Genetics. 12: e1005703. PMID 26771578 DOI: 10.1371/journal.pgen.1005703  0.803
2015 Ralph PL, Coop G. The Role of Standing Variation in Geographic Convergent Adaptation. The American Naturalist. 186: S5-S23. PMID 26656217 DOI: 10.1086/682948  0.687
2015 Ralph PL, Coop G. Convergent Evolution During Local Adaptation to Patchy Landscapes. Plos Genetics. 11: e1005630. PMID 26571125 DOI: 10.1371/Journal.Pgen.1005630  0.676
2015 Sedghifar A, Brandvain Y, Ralph P, Coop G. The Spatial Mixing of Genomes in Secondary Contact Zones. Genetics. 201: 243-61. PMID 26205988 DOI: 10.1534/Genetics.115.179838  0.747
2015 Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J. Independent Molecular Basis of Convergent Highland Adaptation in Maize. Genetics. PMID 26078279 DOI: 10.1534/Genetics.115.178327  0.523
2014 Dines JP, Otárola-Castillo E, Ralph P, Alas J, Daley T, Smith AD, Dean MD. Sexual selection targets cetacean pelvic bones. Evolution; International Journal of Organic Evolution. 68: 3296-306. PMID 25186496 DOI: 10.1111/Evo.12516  0.304
2013 Bradburd GS, Ralph PL, Coop GM. Disentangling the effects of geographic and ecological isolation on genetic differentiation. Evolution; International Journal of Organic Evolution. 67: 3258-73. PMID 24102455 DOI: 10.1111/evo.12193  0.809
2013 Ralph P, Coop G. The geography of recent genetic ancestry across Europe. Plos Biology. 11: e1001555. PMID 23667324 DOI: 10.1371/Journal.Pbio.1001555  0.747
2012 Boettiger C, Coop G, Ralph P. Is your phylogeny informative? Measuring the power of comparative methods. Evolution; International Journal of Organic Evolution. 66: 2240-51. PMID 22759299 DOI: 10.1111/J.1558-5646.2011.01574.X  0.627
2012 Coop G, Ralph P. Patterns of neutral diversity under general models of selective sweeps. Genetics. 192: 205-24. PMID 22714413 DOI: 10.1534/Genetics.112.141861  0.659
2011 Ulstrup KE, Kühl M, van Oppen MJH, Cooper TF, Ralph PJ. Variation in photosynthesis and respiration in geographically distinct populations of two reef-building coral species Aquatic Biology. 12: 241-248. DOI: 10.3354/ab00338  0.323
2010 Ralph P, Coop G. Parallel adaptation: one or many waves of advance of an advantageous allele? Genetics. 186: 647-68. PMID 20660645 DOI: 10.1534/Genetics.110.119594  0.672
2010 Császár NB, Ralph PJ, Frankham R, Berkelmans R, van Oppen MJ. Estimating the potential for adaptation of corals to climate warming. Plos One. 5: e9751. PMID 20305781 DOI: 10.1371/journal.pone.0009751  0.347
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