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Colby G. Starker, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
molecular biology, biochemistry and genetics to study the symbiosis of Rhizobium bacteria and plant hosts
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Liu D, Myers EA, Xuan S, Prichard LE, Donahue LI, Ellison EE, Starker CG, Voytas DF. Heritable, multinucleotide deletions in plants using viral delivery of a repair exonuclease and guide RNAs. Plant Physiology. PMID 38243587 DOI: 10.1093/plphys/kiae015  0.353
2023 Chamness JC, Kumar J, Cruz AJ, Rhuby E, Holum MJ, Cody JP, Tibebu R, Gamo ME, Starker CG, Zhang F, Voytas DF. An extensible vector toolkit and parts library for advanced engineering of plant genomes. The Plant Genome. e20312. PMID 36896468 DOI: 10.1002/tpg2.20312  0.379
2022 Cody JP, Maher MF, Nasti RA, Starker CG, Chamness JC, Voytas DF. Direct delivery and fast-treated Agrobacterium co-culture (Fast-TrACC) plant transformation methods for Nicotiana benthamiana. Nature Protocols. PMID 36253612 DOI: 10.1038/s41596-022-00749-9  0.367
2020 Weiss T, Wang C, Kang X, Zhao H, Gamo ME, Starker CG, Crisp PA, Zhou P, Springer NM, Voytas DF, Zhang F. Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis. The Plant Journal : For Cell and Molecular Biology. PMID 32786122 DOI: 10.1111/Tpj.14949  0.475
2020 Khakhar A, Starker CG, Chamness JC, Lee N, Stokke S, Wang C, Swanson R, Rizvi F, Imaizumi T, Voytas DF. Correction: Building customizable auto-luminescent luciferase-based reporters in plants. Elife. 9. PMID 32662767 DOI: 10.7554/Elife.60938  0.379
2020 Khakhar A, Starker CG, Chamness JC, Lee N, Stokke S, Wang C, Swanson R, Rizvi F, Imaizumi T, Voytas DF. Building customizable auto-luminescent luciferase-based reporters in plants. Elife. 9. PMID 32209230 DOI: 10.7554/Elife.52786  0.461
2020 Liška F, Peterková R, Peterka M, Landa V, Zídek V, Mlejnek P, Šilhavý J, Šimáková M, Křen V, Starker CG, Voytas DF, Izsvák Z, Pravenec M. Correction: Targeting of the Plzf Gene in the Rat by Transcription Activator-Like Effector Nuclease Results in Caudal Regression Syndrome in Spontaneously Hypertensive Rats. Plos One. 15: e0228139. PMID 31945126 DOI: 10.1371/Journal.Pone.0228139  0.308
2020 Khakhar A, Starker CG, Chamness JC, Lee N, Stokke S, Wang C, Swanson R, Rizvi F, Imaizumi T, Voytas DF. Author response: Building customizable auto-luminescent luciferase-based reporters in plants Elife. DOI: 10.7554/Elife.52786.Sa2  0.348
2019 Maher MF, Nasti RA, Vollbrecht M, Starker CG, Clark MD, Voytas DF. Plant gene editing through de novo induction of meristems. Nature Biotechnology. PMID 31844292 DOI: 10.1038/S41587-019-0337-2  0.501
2019 Nadakuduti SS, Starker CG, Ko DK, Jayakody TB, Buell CR, Voytas DF, Douches DS. Evaluation of Methods to Assess Activity of Engineered Genome-Editing Nucleases in Protoplasts. Frontiers in Plant Science. 10: 110. PMID 30800139 DOI: 10.3389/Fpls.2019.00110  0.411
2019 Nadakuduti SS, Starker CG, Voytas DF, Buell CR, Douches DS. Genome Editing in Potato with CRISPR/Cas9. Methods in Molecular Biology (Clifton, N.J.). 1917: 183-201. PMID 30610637 DOI: 10.1007/978-1-4939-8991-1_14  0.435
2018 Nadakuduti SS, Buell CR, Voytas DF, Starker CG, Douches DS. Genome Editing for Crop Improvement - Applications in Clonally Propagated Polyploids With a Focus on Potato ( L.). Frontiers in Plant Science. 9: 1607. PMID 30483283 DOI: 10.3389/Fpls.2018.01607  0.337
2017 Hummel AW, Chauhan RD, Cermak T, Mutka AM, Vijayaraghavan A, Boyher A, Starker CG, Bart R, Voytas DF, Taylor NJ. Allele exchange at the EPSPS locus confers glyphosate tolerance in cassava. Plant Biotechnology Journal. PMID 29223136 DOI: 10.1111/Pbi.12868  0.491
2017 Curtin SJ, Xiong Y, Michno JM, Campbell BW, Stec AO, Čermák T, Starker C, Voytas DF, Eamens AL, Stupar RM. CRISPR/Cas9 and TALENs generate heritable mutations for genes involved in small RNA processing of Glycine max and Medicago truncatula. Plant Biotechnology Journal. PMID 29087011 DOI: 10.1111/Pbi.12857  0.458
2017 Holme IB, Wendt T, Gil-Humanes J, Deleuran LC, Starker CG, Voytas DF, Brinch-Pedersen H. Evaluation of the mature grain phytase candidate HvPAPhy_a gene in barley (Hordeum vulgare L.) using CRISPR/Cas9 and TALENs. Plant Molecular Biology. PMID 28755320 DOI: 10.1007/S11103-017-0640-6  0.4
2017 Cermak T, Curtin SJ, Gil-Humanes J, Čegan R, Kono TJY, Konečná E, Belanto JJ, Starker CG, Mathre JW, Greenstein RL, Voytas DF. A multi-purpose toolkit to enable advanced genome engineering in plants. The Plant Cell. PMID 28522548 DOI: 10.1105/Tpc.16.00922  0.476
2017 Liška F, Landa V, Zídek V, Mlejnek P, Šilhavý J, Šimáková M, Strnad H, Trnovská J, Škop V, Kazdová L, Starker CG, Voytas DF, Izsvák Z, Mancini M, Šeda O, et al. Downregulation of Plzf Gene Ameliorates Metabolic and Cardiac Traits in the Spontaneously Hypertensive Rat. Hypertension (Dallas, Tex. : 1979). PMID 28396530 DOI: 10.1161/Hypertensionaha.116.08798  0.349
2016 Gil-Humanes J, Wang Y, Liang Z, Shan Q, Ozuna CV, Sánchez-León S, Baltes NJ, Starker C, Barro F, Gao C, Voytas DF. High efficiency gene targeting in hexaploid wheat using DNA replicons and CRISPR/Cas9. The Plant Journal : For Cell and Molecular Biology. PMID 27943461 DOI: 10.1111/Tpj.13446  0.476
2016 Liška F, Peterková R, Peterka M, Landa V, Zídek V, Mlejnek P, Šilhavý J, Šimáková M, Křen V, Starker CG, Voytas DF, Izsvák Z, Pravenec M. Targeting of the Plzf Gene in the Rat by Transcription Activator-Like Effector Nuclease Results in Caudal Regression Syndrome in Spontaneously Hypertensive Rats. Plos One. 11: e0164206. PMID 27727328 DOI: 10.1371/Journal.Pone.0164206  0.375
2016 Park JM, Jung CH, Seo M, Otto NM, Grunwald D, Kim KH, Moriarity B, Kim YM, Starker C, Nho RS, Voytas D, Kim DH. The ULK1 complex mediates MTORC1 signaling to the autophagy initiation machinery via binding and phosphorylating ATG14. Autophagy. 12: 547-564. PMID 27046250 DOI: 10.1080/15548627.2016.1140293  0.312
2015 Nishizawa-Yokoi A, Cermak T, Hoshino T, Sugimoto K, Saika H, Mori A, Osakabe K, Hamada M, Katayose Y, Starker C, Voytas DF, Toki S. A defect in DNA ligase 4 enhances the frequency of TALEN-mediated targeted mutagenesis in rice. Plant Physiology. PMID 26668331 DOI: 10.1104/Pp.15.01542  0.441
2015 Osborn MJ, Gabriel R, Webber BR, DeFeo AP, McElroy AN, Jarjour J, Starker CG, Wagner JE, Joung JK, Voytas DF, von Kalle C, Schmidt M, Blazar BR, Tolar J. Fanconi anemia gene editing by the CRISPR/Cas9 system. Human Gene Therapy. 26: 114-26. PMID 25545896 DOI: 10.1089/Hum.2014.111  0.429
2015 Cermak T, Starker CG, Voytas DF. Efficient design and assembly of custom TALENs using the Golden Gate platform. Methods in Molecular Biology (Clifton, N.J.). 1239: 133-59. PMID 25408404 DOI: 10.1007/978-1-4939-1862-1_7  0.395
2015 Osborn MJ, Webber BR, Knipping F, Lonetree C, DeFeo A, McElroy A, Starker C, Gabriel R, Merkel S, Hippen KL, Voytas D, von Kalle C, Schmidt M, Miller JS, Jarjour J, et al. Megatal, Crispr/Cas9, and Talen T-Cell Receptor Gene Editing Blood. 126: 2045-2045. DOI: 10.1182/Blood.V126.23.2045.2045  0.432
2014 Lor VS, Starker CG, Voytas DF, Weiss D, Olszewski NE. Targeted mutagenesis of the tomato PROCERA gene using transcription activator-like effector nucleases. Plant Physiology. 166: 1288-91. PMID 25217528 DOI: 10.1104/Pp.114.247593  0.422
2014 Qi Y, Starker CG, Zhang F, Baltes NJ, Voytas DF. Tailor-made mutations in Arabidopsis using zinc finger nucleases. Methods in Molecular Biology (Clifton, N.J.). 1062: 193-209. PMID 24057367 DOI: 10.1007/978-1-62703-580-4_10  0.402
2013 Doyle EL, Hummel AW, Demorest ZL, Starker CG, Voytas DF, Bradley P, Bogdanove AJ. TAL effector specificity for base 0 of the DNA target is altered in a complex, effector- and assay-dependent manner by substitutions for the tryptophan in cryptic repeat -1. Plos One. 8: e82120. PMID 24312634 DOI: 10.1371/Journal.Pone.0082120  0.39
2013 Floss DS, Schmitz AM, Starker CG, Gantt JS, Harrison MJ. Gene silencing in Medicago truncatula roots using RNAi. Methods in Molecular Biology (Clifton, N.J.). 1069: 163-77. PMID 23996315 DOI: 10.1007/978-1-62703-613-9_12  0.385
2013 Curtin SJ, Anderson JE, Starker CG, Baltes NJ, Mani D, Voytas DF, Stupar RM. Targeted mutagenesis for functional analysis of gene duplication in legumes. Methods in Molecular Biology (Clifton, N.J.). 1069: 25-42. PMID 23996306 DOI: 10.1007/978-1-62703-613-9_3  0.445
2013 Qi Y, Li X, Zhang Y, Starker CG, Baltes NJ, Zhang F, Sander JD, Reyon D, Joung JK, Voytas DF. Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases. G3 (Bethesda, Md.). 3: 1707-15. PMID 23979943 DOI: 10.1534/G3.113.006270  0.432
2013 Wendt T, Holm PB, Starker CG, Christian M, Voytas DF, Brinch-Pedersen H, Holme IB. TAL effector nucleases induce mutations at a pre-selected location in the genome of primary barley transformants. Plant Molecular Biology. 83: 279-85. PMID 23689819 DOI: 10.1007/S11103-013-0078-4  0.4
2013 Osborn MJ, Starker CG, McElroy AN, Webber BR, Riddle MJ, Xia L, DeFeo AP, Gabriel R, Schmidt M, von Kalle C, Carlson DF, Maeder ML, Joung JK, Wagner JE, Voytas DF, et al. TALEN-based gene correction for epidermolysis bullosa. Molecular Therapy : the Journal of the American Society of Gene Therapy. 21: 1151-9. PMID 23546300 DOI: 10.1038/Mt.2013.56  0.467
2013 Qi Y, Zhang Y, Zhang F, Baller JA, Cleland SC, Ryu Y, Starker CG, Voytas DF. Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways. Genome Research. 23: 547-54. PMID 23282329 DOI: 10.1101/Gr.145557.112  0.457
2013 Zhang Y, Zhang F, Li X, Baller JA, Qi Y, Starker CG, Bogdanove AJ, Voytas DF. Transcription activator-like effector nucleases enable efficient plant genome engineering. Plant Physiology. 161: 20-7. PMID 23124327 DOI: 10.1104/Pp.112.205179  0.508
2012 Christian ML, Demorest ZL, Starker CG, Osborn MJ, Nyquist MD, Zhang Y, Carlson DF, Bradley P, Bogdanove AJ, Voytas DF. Targeting G with TAL effectors: a comparison of activities of TALENs constructed with NN and NK repeat variable di-residues. Plos One. 7: e45383. PMID 23028976 DOI: 10.1371/Journal.Pone.0045383  0.345
2012 Bedell VM, Wang Y, Campbell JM, Poshusta TL, Starker CG, Krug RG, Tan W, Penheiter SG, Ma AC, Leung AY, Fahrenkrug SC, Carlson DF, Voytas DF, Clark KJ, Essner JJ, et al. In vivo genome editing using a high-efficiency TALEN system. Nature. 491: 114-8. PMID 23000899 DOI: 10.1038/Nature11537  0.376
2012 Dahlem TJ, Hoshijima K, Jurynec MJ, Gunther D, Starker CG, Locke AS, Weis AM, Voytas DF, Grunwald DJ. Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome. Plos Genetics. 8: e1002861. PMID 22916025 DOI: 10.1371/Journal.Pgen.1002861  0.41
2011 Curtin SJ, Zhang F, Sander JD, Haun WJ, Starker C, Baltes NJ, Reyon D, Dahlborg EJ, Goodwin MJ, Coffman AP, Dobbs D, Joung JK, Voytas DF, Stupar RM. Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases. Plant Physiology. 156: 466-73. PMID 21464476 DOI: 10.1104/Pp.111.172981  0.472
2010 Miyahara A, Richens J, Starker C, Morieri G, Smith L, Long S, Downie JA, Oldroyd GED. Conservation in Function of a SCAR/WAVE Component during Infection Thread and Root Hair Growth in Medicago truncatula Molecular Plant-Microbe Interactions. 23: 1553-1562. PMID 20731530 DOI: 10.1094/Mpmi-06-10-0144  0.549
2010 Wang D, Griffitts J, Starker C, Fedorova E, Limpens E, Ivanov S, Bisseling T, Long S. A nodule-specific protein secretory pathway required for nitrogen-fixing symbiosis Science. 327: 1126-1129. PMID 20185723 DOI: 10.1126/Science.1184096  0.639
2010 Pumplin N, Mondo SJ, Topp S, Starker CG, Gantt JS, Harrison MJ. Medicago truncatula Vapyrin is a novel protein required for arbuscular mycorrhizal symbiosis. The Plant Journal : For Cell and Molecular Biology. 61: 482-94. PMID 19912567 DOI: 10.1111/J.1365-313X.2009.04072.X  0.441
2007 Middleton PH, Jakab J, Penmetsa RV, Starker CG, Doll J, Kaló P, Prabhu R, Marsh JF, Mitra RM, Kereszt A, Dudas B, VandenBosch K, Long SR, Cook DR, Kiss GB, et al. An ERF transcription factor in Medicago truncatula that is essential for Nod factor signal transduction. The Plant Cell. 19: 1221-34. PMID 17449807 DOI: 10.1105/Tpc.106.048264  0.641
2006 Starker CG, Parra-Colmenares AL, Smith L, Mitra RM, Long SR. Nitrogen fixation mutants of Medicago truncatula fail to support plant and bacterial symbiotic gene expression. Plant Physiology. 140: 671-80. PMID 16407449 DOI: 10.1104/Pp.105.072132  0.689
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