Martin T. Ferris, Ph.D. - Publications

Viral evolution

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Bowen JR, Ferris MT, Suthar MS. Systems biology: A tool for charting the antiviral landscape. Virus Research. PMID 26795869 DOI: 10.1016/j.virusres.2016.01.005  0.44
2015 Long KM, Ferris MT, Whitmore AC, Montgomery SA, Thurlow LR, McGee CE, Rodriguez CA, Lim JK, Heise MT. Gamma-delta T cells play a protective role in chikungunya virus-induced disease. Journal of Virology. PMID 26491151 DOI: 10.1128/JVI.02159-15  0.44
2015 Gralinski LE, Ferris MT, Aylor DL, Whitmore AC, Green R, Frieman MB, Deming D, Menachery VD, Miller DR, Buus RJ, Bell TA, Churchill GA, Threadgill DW, Katze MG, McMillan L, et al. Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross. Plos Genetics. 11: e1005504. PMID 26452100 DOI: 10.1371/journal.pgen.1005504  0.44
2015 Menachery VD, Gralinski LE, Baric RS, Ferris MT. New Metrics for Evaluating Viral Respiratory Pathogenesis. Plos One. 10: e0131451. PMID 26115403 DOI: 10.1371/journal.pone.0131451  0.44
2015 Graham JB, Thomas S, Swarts J, McMillan AA, Ferris MT, Suthar MS, Treuting PM, Ireton R, Gale M, Lund JM. Genetic diversity in the collaborative cross model recapitulates human West Nile virus disease outcomes. Mbio. 6: e00493-15. PMID 25944860 DOI: 10.1128/mBio.00493-15  0.44
2015 Lindesmith LC, Ferris MT, Mullan CW, Ferreira J, Debbink K, Swanstrom J, Richardson C, Goodwin RR, Baehner F, Mendelman PM, Bargatze RF, Baric RS. Broad blockade antibody responses in human volunteers after immunization with a multivalent norovirus VLP candidate vaccine: immunological analyses from a phase I clinical trial. Plos Medicine. 12: e1001807. PMID 25803642 DOI: 10.1371/journal.pmed.1001807  0.44
2014 Aevermann BD, Pickett BE, Kumar S, Klem EB, Agnihothram S, Askovich PS, Bankhead A, Bolles M, Carter V, Chang J, Clauss TR, Dash P, Diercks AH, Eisfeld AJ, Ellis A, ... ... Ferris MT, et al. A comprehensive collection of systems biology data characterizing the host response to viral infection. Scientific Data. 1: 140033. PMID 25977790 DOI: 10.1038/sdata.2014.33  0.44
2014 Rasmussen AL, Okumura A, Ferris MT, Green R, Feldmann F, Kelly SM, Scott DP, Safronetz D, Haddock E, LaCasse R, Thomas MJ, Sova P, Carter VS, Weiss JM, Miller DR, et al. Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance. Science (New York, N.Y.). 346: 987-91. PMID 25359852 DOI: 10.1126/science.1259595  0.44
2014 Josset L, Tchitchek N, Gralinski LE, Ferris MT, Eisfeld AJ, Green RR, Thomas MJ, Tisoncik-Go J, Schroth GP, Kawaoka Y, Manuel de Villena FP, Baric RS, Heise MT, Peng X, Katze MG. Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts. Rna Biology. 11: 875-90. PMID 24922324 DOI: 10.4161/rna.29442  0.44
2014 Xiong H, Morrison J, Ferris MT, Gralinski LE, Whitmore AC, Green R, Thomas MJ, Tisoncik-Go J, Schroth GP, Pardo-Manuel de Villena F, Baric RS, Heise MT, Peng X, Katze MG. Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression. G3 (Bethesda, Md.). 4: 1429-44. PMID 24902603 DOI: 10.1534/g3.114.011759  0.44
2014 Schäfer A, Baric RS, Ferris MT. Systems approaches to Coronavirus pathogenesis. Current Opinion in Virology. 6: 61-9. PMID 24842079 DOI: 10.1016/j.coviro.2014.04.007  0.44
2014 Debbink K, Lindesmith LC, Ferris MT, Swanstrom J, Beltramello M, Corti D, Lanzavecchia A, Baric RS. Within-host evolution results in antigenically distinct GII.4 noroviruses. Journal of Virology. 88: 7244-55. PMID 24648459 DOI: 10.1128/JVI.00203-14  0.44
2014 Ferris MT, Heise MT. Quantitative genetics in the study of virus-induced disease. Advances in Virus Research. 88: 193-225. PMID 24373313 DOI: 10.1016/B978-0-12-800098-4.00004-0  0.44
2013 Gralinski LE, Bankhead A, Jeng S, Menachery VD, Proll S, Belisle SE, Matzke M, Webb-Robertson BJ, Luna ML, Shukla AK, Ferris MT, Bolles M, Chang J, Aicher L, Waters KM, et al. Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury. Mbio. 4. PMID 23919993 DOI: 10.1128/mBio.00271-13  0.44
2013 Tchitchek N, Eisfeld AJ, Tisoncik-Go J, Josset L, Gralinski LE, Bécavin C, Tilton SC, Webb-Robertson BJ, Ferris MT, Totura AL, Li C, Neumann G, Metz TO, Smith RD, Waters KM, et al. Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice. Bmc Systems Biology. 7: 69. PMID 23895213 DOI: 10.1186/1752-0509-7-69  0.44
2013 Long KM, Whitmore AC, Ferris MT, Sempowski GD, McGee C, Trollinger B, Gunn B, Heise MT. Dendritic cell immunoreceptor regulates Chikungunya virus pathogenesis in mice. Journal of Virology. 87: 5697-706. PMID 23487448 DOI: 10.1128/JVI.01611-12  0.44
2013 Ferris MT, Aylor DL, Bottomly D, Whitmore AC, Aicher LD, Bell TA, Bradel-Tretheway B, Bryan JT, Buus RJ, Gralinski LE, Haagmans BL, McMillan L, Miller DR, Rosenzweig E, Valdar W, et al. Modeling host genetic regulation of influenza pathogenesis in the collaborative cross. Plos Pathogens. 9: e1003196. PMID 23468633 DOI: 10.1371/journal.ppat.1003196  0.44
2013 Wollish AC, Ferris MT, Blevins LK, Loo YM, Gale M, Heise MT. An attenuating mutation in a neurovirulent Sindbis virus strain interacts with the IPS-1 signaling pathway in vivo. Virology. 435: 269-80. PMID 23084425 DOI: 10.1016/j.virol.2012.09.008  0.44
2012 Bottomly D, Ferris MT, Aicher LD, Rosenzweig E, Whitmore A, Aylor DL, Haagmans BL, Gralinski LE, Bradel-Tretheway BG, Bryan JT, Threadgill DW, de Villena FP, Baric RS, Katze MG, Heise M, et al. Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice. G3 (Bethesda, Md.). 2: 213-21. PMID 22384400 DOI: 10.1534/g3.111.001800  0.44
2012 Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, ... ... Ferris MT, et al. The genome architecture of the collaborative cross mouse genetic reference population Genetics. 190: 389-401. PMID 22345608 DOI: 10.1534/genetics.111.132639  0.44
2011 Peng X, Gralinski L, Ferris MT, Frieman MB, Thomas MJ, Proll S, Korth MJ, Tisoncik JR, Heise M, Luo S, Schroth GP, Tumpey TM, Li C, Kawaoka Y, Baric RS, et al. Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection. Mbio. 2. PMID 22086488 DOI: 10.1128/mBio.00198-11  0.44
2011 Bolles M, Deming D, Long K, Agnihothram S, Whitmore A, Ferris M, Funkhouser W, Gralinski L, Totura A, Heise M, Baric RS. A double-inactivated severe acute respiratory syndrome coronavirus vaccine provides incomplete protection in mice and induces increased eosinophilic proinflammatory pulmonary response upon challenge. Journal of Virology. 85: 12201-15. PMID 21937658 DOI: 10.1128/JVI.06048-11  0.44
2011 Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, et al. Genetic analysis of complex traits in the emerging Collaborative Cross. Genome Research. 21: 1213-22. PMID 21406540 DOI: 10.1101/gr.111310.110  0.44
2011 Sheahan T, Whitmore A, Long K, Ferris M, Rockx B, Funkhouser W, Donaldson E, Gralinski L, Collier M, Heise M, Davis N, Johnston R, Baric RS. Successful vaccination strategies that protect aged mice from lethal challenge from influenza virus and heterologous severe acute respiratory syndrome coronavirus. Journal of Virology. 85: 217-30. PMID 20980507 DOI: 10.1128/JVI.01805-10  0.44
2010 Peng X, Gralinski L, Armour CD, Ferris MT, Thomas MJ, Proll S, Bradel-Tretheway BG, Korth MJ, Castle JC, Biery MC, Bouzek HK, Haynor DR, Frieman MB, Heise M, Raymond CK, et al. Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling. Mbio. 1. PMID 20978541 DOI: 10.1128/mBio.00206-10  0.44
2008 Rokyta DR, Beisel CJ, Joyce P, Ferris MT, Burch CL, Wichman HA. Beneficial fitness effects are not exponential for two viruses. Journal of Molecular Evolution. 67: 368-76. PMID 18779988 DOI: 10.1007/s00239-008-9153-x  0.44
2007 Ferris MT, Joyce P, Burch CL. High frequency of mutations that expand the host range of an RNA virus. Genetics. 176: 1013-22. PMID 17409090 DOI: 10.1534/genetics.106.064634  0.44
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