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Yu Qiu, Ph.D. - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Genomics, gene regulation, bacteria, bioinformatics, DNA chips, genome engineering
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14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Yang J, Li G, Pan Z, Liu M, Hou Y, Xu Y, Zhao X, Deng H, Sheng L, Qiu Y, Zhang Y. All-solid-state high-energy asymmetric supercapacitors enabled by three-dimensional mixed-valent MnOx nanospike and graphene electrodes. Acs Applied Materials & Interfaces. PMID 26393403 DOI: 10.1021/acsami.5b07849  0.303
2013 Latif H, Lerman JA, Portnoy VA, Tarasova Y, Nagarajan H, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Lee DH, Qiu Y, Zengler K. The genome organization of Thermotoga maritima reflects its lifestyle. Plos Genetics. 9: e1003485. PMID 23637642 DOI: 10.1371/Journal.Pgen.1003485  0.368
2012 Kim D, Hong JS, Qiu Y, Nagarajan H, Seo JH, Cho BK, Tsai SF, Palsson BØ. Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling. Plos Genetics. 8: e1002867. PMID 22912590 DOI: 10.1371/Journal.Pgen.1002867  0.365
2010 Klimes A, Franks AE, Glaven RH, Tran H, Barrett CL, Qiu Y, Zengler K, Lovley DR. Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA. Fems Microbiology Letters. 310: 62-8. PMID 20629752 DOI: 10.1111/J.1574-6968.2010.02046.X  0.308
2010 Qiu Y, Cho BK, Park YS, Lovley D, Palsson BØ, Zengler K. Structural and operational complexity of the Geobacter sulfurreducens genome. Genome Research. 20: 1304-11. PMID 20592237 DOI: 10.1101/Gr.107540.110  0.348
2010 Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL. De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. Plos One. 5: e10922. PMID 20544019 DOI: 10.1371/Journal.Pone.0010922  0.315
2009 Cho BK, Zengler K, Qiu Y, Park YS, Knight EM, Barrett CL, Gao Y, Palsson BØ. The transcription unit architecture of the Escherichia coli genome. Nature Biotechnology. 27: 1043-9. PMID 19881496 DOI: 10.1038/Nbt.1582  0.341
2008 Glasner JD, Plunkett G, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, et al. Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Research. 36: D519-23. PMID 17999997 DOI: 10.1093/Nar/Gkm973  0.514
2007 Greene JM, Plunkett G, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, et al. A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease. Advances in Experimental Medicine and Biology. 603: 28-42. PMID 17966403 DOI: 10.1007/978-0-387-72124-8_4  0.489
2005 Hansen AM, Qiu Y, Yeh N, Blattner FR, Durfee T, Jin DJ. SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli Molecular Microbiology. 56: 719-734. PMID 15819627 DOI: 10.1111/J.1365-2958.2005.04567.X  0.445
2005 Kang Y, Weber KD, Qiu Y, Kiley PJ, Blattner FR. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function Journal of Bacteriology. 187: 1135-1160. PMID 15659690 DOI: 10.1128/Jb.187.3.1135-1160.2005  0.612
2004 Kang Y, Durfee T, Glasner JD, Qiu Y, Frisch D, Winterberg KM, Blattner FR. Systematic mutagenesis of the Escherichia coli genome Journal of Bacteriology. 186: 4921-4930. PMID 15262929 DOI: 10.1128/Jb.186.15.4921-4930.2004  0.615
2003 Allen TE, Herrgård MJ, Liu M, Qiu Y, Glasner JD, Blattner FR, Palsson BØ. Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. Journal of Bacteriology. 185: 6392-9. PMID 14563874 DOI: 10.1128/Jb.185.21.6392-6399.2003  0.607
2003 Bockhorst J, Qiu Y, Glasner J, Liu M, Blattner F, Craven M. Predicting bacterial transcription units using sequence and expression data. Bioinformatics (Oxford, England). 19: i34-43. PMID 12855435 DOI: 10.1093/Bioinformatics/Btg1003  0.604
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