Adam M. Deutschbauer, Ph.D. - Publications

Stanford University, Palo Alto, CA 
Functional Genomics

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer AM, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J. Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. Mbio. 7. PMID 27048805 DOI: 10.1128/mBio.02234-15  0.8
2016 Kosina SM, Danielewicz MA, Mohammed M, Ray J, Suh Y, Yilmaz S, Singh AK, Arkin AP, Deutschbauer AM, Northen TR. Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. Acs Synthetic Biology. PMID 26885935 DOI: 10.1021/acssynbio.5b00236  0.8
2016 Blow MJ, Clark TA, Daum CG, Deutschbauer AM, Fomenkov A, Fries R, Froula J, Kang DD, Malmstrom RR, Morgan RD, Posfai J, Singh K, Visel A, Wetmore K, Zhao Z, et al. The Epigenomic Landscape of Prokaryotes. Plos Genetics. 12: e1005854. PMID 26870957 DOI: 10.1371/journal.pgen.1005854  0.8
2015 Rubin BE, Wetmore KM, Price MN, Diamond S, Shultzaberger RK, Lowe LC, Curtin G, Arkin AP, Deutschbauer A, Golden SS. The essential gene set of a photosynthetic organism. Proceedings of the National Academy of Sciences of the United States of America. PMID 26508635 DOI: 10.1073/pnas.1519220112  0.8
2015 Vaccaro BJ, Thorgersen MP, Lancaster WA, Price MN, Wetmore KM, Poole FL, Deutschbauer A, Arkin AP, Adams MW. Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses. Applied and Environmental Microbiology. PMID 26452555 DOI: 10.1128/AEM.02602-15  0.8
2015 Clark IC, Youngblut M, Jacobsen G, Wetmore KM, Deutschbauer A, Lucas L, Coates JD. Genetic dissection of chlorate respiration in Pseudomonas stutzeri PDA reveals syntrophic (per)chlorate reduction. Environmental Microbiology. PMID 26411776 DOI: 10.1111/1462-2920.13068  0.8
2015 Thorgersen MP, Lancaster WA, Vaccaro BJ, Poole FL, Rocha AM, Mehlhorn T, Pettenato A, Ray J, Waters RJ, Melnyk RA, Chakraborty R, Hazen TC, Deutschbauer AM, Arkin AP, Adams MW. Molybdenum Availability is Key to Nitrate Removal in Contaminated Groundwater Environments. Applied and Environmental Microbiology. PMID 25979890 DOI: 10.1128/AEM.00917-15  0.8
2015 Wetmore KM, Price MN, Waters RJ, Lamson JS, He J, Hoover CA, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons. Mbio. 6: e00306-15. PMID 25968644 DOI: 10.1128/mBio.00306-15  0.8
2015 Melnyk RA, Youngblut MD, Clark IC, Carlson HK, Wetmore KM, Price MN, Iavarone AT, Deutschbauer AM, Arkin AP, Coates JD. Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase. Mbio. 6: e00233-15. PMID 25968643 DOI: 10.1128/mBio.00233-15  0.8
2015 Carlson HK, Stoeva MK, Justice NB, Sczesnak A, Mullan MR, Mosqueda LA, Kuehl JV, Deutschbauer AM, Arkin AP, Coates JD. Monofluorophosphate is a selective inhibitor of respiratory sulfate-reducing microorganisms. Environmental Science & Technology. 49: 3727-36. PMID 25698072 DOI: 10.1021/es505843z  0.8
2015 Carlson HK, Kuehl JV, Hazra AB, Justice NB, Stoeva MK, Sczesnak A, Mullan MR, Iavarone AT, Engelbrektson A, Price MN, Deutschbauer AM, Arkin AP, Coates JD. Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate. The Isme Journal. 9: 1295-305. PMID 25405978 DOI: 10.1038/ismej.2014.216  0.8
2014 Deutschbauer A, Price MN, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM. Towards an informative mutant phenotype for every bacterial gene. Journal of Bacteriology. 196: 3643-55. PMID 25112473 DOI: 10.1128/JB.01836-14  0.8
2014 Shao W, Price MN, Deutschbauer AM, Romine MF, Arkin AP. Conservation of transcription start sites within genes across a bacterial genus. Mbio. 5: e01398-14. PMID 24987095 DOI: 10.1128/mBio.01398-14  0.8
2014 Gowda H, Ivanisevic J, Johnson CH, Kurczy ME, Benton HP, Rinehart D, Nguyen T, Ray J, Kuehl J, Arevalo B, Westenskow PD, Wang J, Arkin AP, Deutschbauer AM, Patti GJ, et al. Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses. Analytical Chemistry. 86: 6931-9. PMID 24934772 DOI: 10.1021/ac500734c  0.8
2014 Rinehart D, Johnson CH, Nguyen T, Ivanisevic J, Benton HP, Lloyd J, Arkin AP, Deutschbauer AM, Patti GJ, Siuzdak G. Metabolomic data streaming for biology-dependent data acquisition. Nature Biotechnology. 32: 524-7. PMID 24911492 DOI: 10.1038/nbt.2927  0.8
2014 Kuehl JV, Price MN, Ray J, Wetmore KM, Esquivel Z, Kazakov AE, Nguyen M, Kuehn R, Davis RW, Hazen TC, Arkin AP, Deutschbauer A. Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Mbio. 5: e01041-14. PMID 24865553 DOI: 10.1128/mBio.01041-14  0.8
2014 Korte HL, Fels SR, Christensen GA, Price MN, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD. Genetic basis for nitrate resistance in Desulfovibrio strains. Frontiers in Microbiology. 5: 153. PMID 24795702 DOI: 10.3389/fmicb.2014.00153  0.8
2014 Meyer B, Kuehl JV, Price MN, Ray J, Deutschbauer AM, Arkin AP, Stahl DA. The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf. Environmental Microbiology. 16: 3463-86. PMID 24447568 DOI: 10.1111/1462-2920.12405  0.8
2014 Wilkening S, Lin G, Fritsch ES, Tekkedil MM, Anders S, Kuehn R, Nguyen M, Aiyar RS, Proctor M, Sakhanenko NA, Galas DJ, Gagneur J, Deutschbauer A, Steinmetz LM. An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae. Genetics. 196: 853-65. PMID 24374355 DOI: 10.1534/genetics.113.160291  0.8
2014 Novichkov PS, Li X, Kuehl JV, Deutschbauer AM, Arkin AP, Price MN, Rodionov DA. Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria. Environmental Microbiology. 16: 1-8. PMID 24118949 DOI: 10.1111/1462-2920.12273  0.8
2013 Louie KB, Bowen BP, Cheng X, Berleman JE, Chakraborty R, Deutschbauer A, Arkin A, Northen TR. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Analytical Chemistry. 85: 10856-62. PMID 24111681 DOI: 10.1021/ac402240q  0.8
2013 Bendall ML, Luong K, Wetmore KM, Blow M, Korlach J, Deutschbauer A, Malmstrom RR. Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1. Journal of Bacteriology. 195: 4966-74. PMID 23995632 DOI: 10.1128/JB.00935-13  0.8
2013 Meyer B, Kuehl JV, Deutschbauer AM, Arkin AP, Stahl DA. Flexibility of syntrophic enzyme systems in Desulfovibrio species ensures their adaptation capability to environmental changes. Journal of Bacteriology. 195: 4900-14. PMID 23974031 DOI: 10.1128/JB.00504-13  0.8
2013 Skerker JM, Leon D, Price MN, Mar JS, Tarjan DR, Wetmore KM, Deutschbauer AM, Baumohl JK, Bauer S, Ibáñez AB, Mitchell VD, Wu CH, Hu P, Hazen T, Arkin AP. Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates. Molecular Systems Biology. 9: 674. PMID 23774757 DOI: 10.1038/msb.2013.30  0.8
2013 Price MN, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP. Indirect and suboptimal control of gene expression is widespread in bacteria. Molecular Systems Biology. 9: 660. PMID 23591776 DOI: 10.1038/msb.2013.16  0.8
2013 Meyer B, Kuehl J, Deutschbauer AM, Price MN, Arkin AP, Stahl DA. Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth. Journal of Bacteriology. 195: 990-1004. PMID 23264581 DOI: 10.1128/JB.01959-12  0.8
2013 Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. Acs Chemical Biology. 8: 189-99. PMID 23082955 DOI: 10.1021/cb300477w  0.8
2012 Bowen De León K, Young ML, Camilleri LB, Brown SD, Skerker JM, Deutschbauer AM, Arkin AP, Fields MW. Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr(VI) reduction. Journal of Bacteriology. 194: 5456-7. PMID 22965085 DOI: 10.1128/JB.01224-12  0.8
2011 Deutschbauer A, Price MN, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. Plos Genetics. 7: e1002385. PMID 22125499 DOI: 10.1371/journal.pgen.1002385  0.8
2011 Price MN, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP. Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Journal of Bacteriology. 193: 5716-27. PMID 21840973 DOI: 10.1128/JB.05563-11  0.8
2011 Patti GJ, Tautenhahn R, Fonslow BR, Cho Y, Deutschbauer A, Arkin A, Northen T, Siuzdak G. Meta-analysis of global metabolomics and proteomics data to link alterations with phenotype Spectroscopy. 26: 151-154. DOI: 10.3233/SPE-2011-0534  0.8
2010 Oh J, Fung E, Schlecht U, Davis RW, Giaever G, St Onge RP, Deutschbauer A, Nislow C. Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection. Plos Pathogens. 6: e1001140. PMID 20949076 DOI: 10.1371/journal.ppat.1001140  0.8
2010 Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. A universal TagModule collection for parallel genetic analysis of microorganisms. Nucleic Acids Research. 38: e146. PMID 20494978 DOI: 10.1093/nar/gkq419  0.8
2009 Tang YJ, Martin HG, Deutschbauer A, Feng X, Huang R, Llora X, Arkin A, Keasling JD. Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations. Biotechnology Progress. 25: 1254-9. PMID 19610125 DOI: 10.1002/btpr.227  0.8
2009 Tang YJ, Martin HG, Dehal PS, Deutschbauer A, Llora X, Meadows A, Arkin A, Keasling JD. Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism. Biotechnology and Bioengineering. 102: 1161-9. PMID 19031428 DOI: 10.1002/bit.22129  0.8
2007 McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, Frydman J. Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. Cell. 131: 121-35. PMID 17923092 DOI: 10.1016/j.cell.2007.07.036  0.8
2006 Deutschbauer AM, Chivian D, Arkin AP. Genomics for environmental microbiology. Current Opinion in Biotechnology. 17: 229-35. PMID 16650754 DOI: 10.1016/j.copbio.2006.04.003  0.8
2005 Deutschbauer AM, Davis RW. Quantitative trait loci mapped to single-nucleotide resolution in yeast. Nature Genetics. 37: 1333-40. PMID 16273108 DOI: 10.1038/ng1674  0.8
2005 Deutschbauer AM, Jaramillo DF, Proctor M, Kumm J, Hillenmeyer ME, Davis RW, Nislow C, Giaever G. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics. 169: 1915-25. PMID 15716499 DOI: 10.1534/genetics.104.036871  0.8
2004 Petronczki M, Chwalla B, Siomos MF, Yokobayashi S, Helmhart W, Deutschbauer AM, Davis RW, Watanabe Y, Nasmyth K. Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II. Journal of Cell Science. 117: 3547-59. PMID 15226378 DOI: 10.1242/jcs.01231  0.8
2004 Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, et al. GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Research. 32: D560-7. PMID 14681481 DOI: 10.1093/nar/gkh055  0.8
2002 Steinmetz LM, Deutschbauer AM. Gene function on a genomic scale. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 782: 151-63. PMID 12458004 DOI: 10.1016/S1570-0232(02)00549-4  0.8
2002 Deutschbauer AM, Williams RM, Chu AM, Davis RW. Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 99: 15530-5. PMID 12432101 DOI: 10.1073/pnas.202604399  0.8
2002 Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, ... ... Deutschbauer A, et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature. 418: 387-91. PMID 12140549 DOI: 10.1038/nature00935  0.8
2002 Steinmetz LM, Scharfe C, Deutschbauer AM, Mokranjac D, Herman ZS, Jones T, Chu AM, Giaever G, Prokisch H, Oefner PJ, Davis RW. Systematic screen for human disease genes in yeast. Nature Genetics. 31: 400-4. PMID 12134146 DOI: 10.1038/ng929  0.8
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