Year |
Citation |
Score |
2023 |
Gallot-Lavallée L, Jerlström-Hultqvist J, Zegarra-Vidarte P, Salas-Leiva DE, Stairs CW, Čepička I, Roger AJ, Archibald JM. Massive intein content in reveals aspects of intein mobility in eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 120: e2306381120. PMID 38019867 DOI: 10.1073/pnas.2306381120 |
0.616 |
|
2023 |
Collier JL, Rest JS, Gallot-Lavallée L, Lavington E, Kuo A, Jenkins J, Plott C, Pangilinan J, Daum C, Grigoriev IV, Filloramo GV, Novák Vanclová AMG, Archibald JM. The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses. Current Biology : Cb. PMID 37913769 DOI: 10.1016/j.cub.2023.10.009 |
0.823 |
|
2023 |
Rius M, Rest JS, Filloramo GV, Novák Vanclová AMG, Archibald JM, Collier JL. Horizontal gene transfer and fusion spread carotenogenesis among diverse heterotrophic protists. Genome Biology and Evolution. PMID 36805209 DOI: 10.1093/gbe/evad029 |
0.809 |
|
2023 |
Feng X, Zheng J, Irisarri I, Yu H, Zheng B, Ali Z, de Vries S, Keller J, Fürst-Jansen JMR, Dadras A, Zegers JMS, Rieseberg TP, Ashok AD, Darienko T, Bierenbroodspot MJ, ... ... Archibald JM, et al. Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Biorxiv : the Preprint Server For Biology. PMID 36778228 DOI: 10.1101/2023.01.31.526407 |
0.314 |
|
2023 |
Zhang X, Hu Y, Cheng Z, Archibald JM. HSDecipher: A pipeline for comparative genomic analysis of highly similar duplicate genes in eukaryotic genomes. Star Protocols. 4: 102014. PMID 36633953 DOI: 10.1016/j.xpro.2022.102014 |
0.363 |
|
2022 |
Kim JI, Tanifuji G, Jeong M, Shin W, Archibald JM. Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics. Bmc Biology. 20: 227. PMID 36209116 DOI: 10.1186/s12915-022-01429-6 |
0.43 |
|
2022 |
Matthey-Doret C, Colp MJ, Escoll P, Thierry A, Moreau P, Curtis B, Sahr T, Sarrasin M, Gray MW, Lang BF, Archibald JM, Buchrieser C, Koszul R. Chromosome-scale assemblies of genomes provide insights into infection-related chromatin reorganization. Genome Research. PMID 36109147 DOI: 10.1101/gr.276375.121 |
0.815 |
|
2022 |
Hess S, Williams SK, Busch A, Irisarri I, Delwiche CF, de Vries S, Darienko T, Roger AJ, Archibald JM, Buschmann H, von Schwartzenberg K, de Vries J. A phylogenomically informed five-order system for the closest relatives of land plants. Current Biology : Cb. PMID 36055238 DOI: 10.1016/j.cub.2022.08.022 |
0.502 |
|
2022 |
Kim JI, Jo BY, Park MG, Yoo YD, Shin W, Archibald JM. Evolutionary Dynamics and Lateral Gene Transfer in Raphidophyceae Plastid Genomes. Frontiers in Plant Science. 13: 896138. PMID 35769291 DOI: 10.3389/fpls.2022.896138 |
0.483 |
|
2022 |
Zhang X, Hu Y, Eme L, Maruyama S, Eveleigh RJM, Curtis BA, Sibbald SJ, Hopkins JF, Filloramo GV, van Wijk KJ, Archibald JM. TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets. Star Protocols. 3: 101175. PMID 35243369 DOI: 10.1016/j.xpro.2022.101175 |
0.768 |
|
2022 |
Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, et al. Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042801 DOI: 10.1073/pnas.2115636118 |
0.39 |
|
2021 |
Salas-Leiva DE, Tromer EC, Curtis BA, Jerlström-Hultqvist J, Kolisko M, Yi Z, Salas-Leiva JS, Gallot-Lavallée L, Williams SK, Kops GJPL, Archibald JM, Simpson AGB, Roger AJ. Author Correction: Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist. Nature Communications. 12: 7350. PMID 34916502 DOI: 10.1038/s41467-021-27605-w |
0.733 |
|
2021 |
Salas-Leiva DE, Tromer EC, Curtis BA, Jerlström-Hultqvist J, Kolisko M, Yi Z, Salas-Leiva JS, Gallot-Lavallée L, Williams SK, Kops GJPL, Archibald JM, Simpson AGB, Roger AJ. Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist. Nature Communications. 12: 6003. PMID 34650064 DOI: 10.1038/s41467-021-26077-2 |
0.76 |
|
2021 |
Filloramo GV, Curtis BA, Blanche E, Archibald JM. Re-examination of two diatom reference genomes using long-read sequencing. Bmc Genomics. 22: 379. PMID 34030633 DOI: 10.1186/s12864-021-07666-3 |
0.823 |
|
2021 |
Sibbald SJ, Lawton M, Archibald JM. Mitochondrial Genome Evolution in Pelagophyte Algae. Genome Biology and Evolution. 13. PMID 33675661 DOI: 10.1093/gbe/evab018 |
0.845 |
|
2020 |
Kim JI, Jeong M, Archibald JM, Shin W. Comparative Plastid Genomics of Non-Photosynthetic Chrysophytes: Genome Reduction and Compaction. Frontiers in Plant Science. 11: 572703. PMID 33013997 DOI: 10.3389/Fpls.2020.572703 |
0.562 |
|
2020 |
de Vries S, de Vries J, Archibald JM, Slamovits CH. Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression. Fems Microbiology Ecology. PMID 32918444 DOI: 10.1093/Femsec/Fiaa184 |
0.722 |
|
2020 |
Sibbald SJ, Eme L, Archibald JM, Roger AJ. Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes. Trends in Parasitology. PMID 32828660 DOI: 10.1016/J.Pt.2020.07.014 |
0.839 |
|
2020 |
Sibbald SJ, Archibald JM. Genomic insights into plastid evolution. Genome Biology and Evolution. PMID 32402068 DOI: 10.1093/Gbe/Evaa096 |
0.84 |
|
2020 |
Gallot-Lavallée L, Archibald JM. Phagocytosis in a Shape-shifting Bacterium. Trends in Microbiology. 28: 428-430. PMID 32396823 DOI: 10.1016/J.Tim.2020.02.017 |
0.306 |
|
2020 |
de Vries J, de Vries S, Curtis BA, Zhou H, Penny S, Feussner K, Pinto DM, Steinert M, Cohen A, von Schwartzenberg K, Archibald JM. Heat stress response in the closest algal relatives of land plants reveals conserved stress signaling circuits. The Plant Journal : For Cell and Molecular Biology. PMID 32333477 DOI: 10.1111/Tpj.14782 |
0.334 |
|
2020 |
Tanifuji G, Kamikawa R, Moore CE, Mills T, Onodera NT, Kashiyama Y, Archibald JM, Inagaki Y, Hashimoto T. Comparative plastid genomics of Cryptomonas species reveals fine-scale genomic responses to loss of photosynthesis. Genome Biology and Evolution. PMID 31922581 DOI: 10.1093/Gbe/Evaa001 |
0.521 |
|
2019 |
Colp MJ, Archibald JM. Evolution: New Protist Predators under the Sun. Current Biology : Cb. 29: R936-R938. PMID 31593671 DOI: 10.1016/J.Cub.2019.08.029 |
0.789 |
|
2019 |
Archibald JM. Genomics reveals alga-associated cyanobacteria hiding in plain sight. Proceedings of the National Academy of Sciences of the United States of America. 116: 15757-15759. PMID 31341089 DOI: 10.1073/Pnas.1909788116 |
0.465 |
|
2019 |
Åsman AKM, Curtis BA, Archibald JM. Nucleomorph small RNAs in cryptophyte and chlorarachniophyte algae. Genome Biology and Evolution. PMID 30949682 DOI: 10.1093/Gbe/Evz064 |
0.337 |
|
2019 |
Grisdale CJ, Smith DR, Archibald JM. Relative mutation rates in nucleomorph-bearing algae. Genome Biology and Evolution. PMID 30859201 DOI: 10.1093/Gbe/Evz056 |
0.528 |
|
2019 |
Sibbald SJ, Hopkins JF, Filloramo GV, Archibald JM. Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis. Bmc Genomics. 20: 38. PMID 30642248 DOI: 10.1186/S12864-018-5412-4 |
0.8 |
|
2019 |
Kim JI, Shin H, Škaloud P, Jung J, Yoon HS, Archibald JM, Shin W. Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation. Bmc Evolutionary Biology. 19: 20. PMID 30634905 DOI: 10.1186/S12862-018-1316-9 |
0.485 |
|
2018 |
Cenci U, Sibbald SJ, Curtis BA, Kamikawa R, Eme L, Moog D, Henrissat B, Maréchal E, Chabi M, Djemiel C, Roger AJ, Kim E, Archibald JM. Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. Bmc Biology. 16: 137. PMID 30482201 DOI: 10.1186/S12915-018-0593-5 |
0.82 |
|
2018 |
Lukeš J, Wheeler R, Jirsová D, David V, Archibald JM. Massive mitochondrial DNA content in diplonemid and kinetoplastid protists. Iubmb Life. PMID 30291814 DOI: 10.1002/Iub.1894 |
0.308 |
|
2018 |
de Vries S, de Vries J, von Dahlen JK, Gould SB, Archibald JM, Rose LE, Slamovits CH. On plant defense signaling networks and early land plant evolution. Communicative & Integrative Biology. 11: 1-14. PMID 30214675 DOI: 10.1080/19420889.2018.1486168 |
0.665 |
|
2018 |
de Vries J, Archibald JM. Plastid genomes. Current Biology : Cb. 28: R336-R337. PMID 29689202 DOI: 10.1016/j.cub.2018.01.027 |
0.363 |
|
2018 |
Kim JI, Yoon HS, Yi G, Shin W, Archibald JM. Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements. Bmc Genomics. 19: 275. PMID 29678149 DOI: 10.1186/S12864-018-4626-9 |
0.522 |
|
2018 |
Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, et al. 10KP: A phylodiverse genome sequencing plan. Gigascience. 7: 1-9. PMID 29618049 DOI: 10.1093/Gigascience/Giy013 |
0.475 |
|
2018 |
de Vries J, Curtis BA, Gould SB, Archibald JM. Embryophyte stress signaling evolved in the algal progenitors of land plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 29581286 DOI: 10.1073/Pnas.1719230115 |
0.358 |
|
2018 |
Raina JB, Eme L, Pollock FJ, Spang A, Archibald JM, Williams TA. Symbiosis in the microbial world: from ecology to genome evolution. Biology Open. 7. PMID 29472284 DOI: 10.1242/Bio.032524 |
0.443 |
|
2018 |
Nowak BF, Archibald JM. Opportunistic but Lethal: The Mystery of Paramoebae. Trends in Parasitology. PMID 29422444 DOI: 10.1016/J.Pt.2018.01.004 |
0.428 |
|
2018 |
de Vries J, Archibald JM. Plant evolution: landmarks on the path to terrestrial life. The New Phytologist. PMID 29318635 DOI: 10.1111/Nph.14975 |
0.342 |
|
2017 |
Archibald JM. Evolution: Protein Import in a Nascent Photosynthetic Organelle. Current Biology : Cb. 27: R1004-R1006. PMID 28950079 DOI: 10.1016/J.Cub.2017.08.013 |
0.393 |
|
2017 |
Tanifuji G, Cenci U, Moog D, Dean S, Nakayama T, David V, Fiala I, Curtis BA, Sibbald SJ, Onodera NT, Colp M, Flegontov P, Johnson-MacKinnon J, McPhee M, Inagaki Y, ... ... Archibald JM, et al. Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis. Scientific Reports. 7: 11688. PMID 28916813 DOI: 10.1038/S41598-017-11866-X |
0.81 |
|
2017 |
Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, ... ... Archibald JM, et al. Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. Plos Biology. 15: e2003769. PMID 28892507 DOI: 10.1371/Journal.Pbio.2003769 |
0.837 |
|
2017 |
Kim JI, Moore CE, Archibald JM, Bhattacharya D, Yi G, Yoon HS, Shin W. Evolutionary Dynamics of Cryptophyte Plastid Genomes. Genome Biology and Evolution. 9: 1859-1872. PMID 28854597 DOI: 10.1093/Gbe/Evx123 |
0.583 |
|
2017 |
Sibbald SJ, Archibald JM. More protist genomes needed. Nature Ecology & Evolution. 1: 145. PMID 28812681 DOI: 10.1038/S41559-017-0145 |
0.829 |
|
2017 |
Kamikawa R, Moog D, Zauner S, Tanifuji G, Ishida KI, Miyashita H, Mayama S, Hashimoto T, Maier UG, Archibald JM, Inagaki Y. A non-photosynthetic diatom reveals early steps of reductive evolution in plastids. Molecular Biology and Evolution. PMID 28549159 DOI: 10.1093/Molbev/Msx172 |
0.777 |
|
2017 |
Muñoz-Gómez SA, Mejía-Franco FG, Durnin K, Colp M, Grisdale CJ, Archibald JM, Slamovits CH. The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known. Current Biology : Cb. PMID 28528908 DOI: 10.1016/J.Cub.2017.04.054 |
0.827 |
|
2017 |
de Vries J, de Vries S, Slamovits CH, Rose LE, Archibald JM. How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae? Plant & Cell Physiology. PMID 28340089 DOI: 10.1093/Pcp/Pcx037 |
0.687 |
|
2017 |
Eme L, Gentekaki E, Curtis B, Archibald JM, Roger AJ. Lateral Gene Transfer in the Adaptation of the Anaerobic Parasite Blastocystis to the Gut. Current Biology : Cb. PMID 28262486 DOI: 10.1016/J.Cub.2017.02.003 |
0.631 |
|
2017 |
de Vries J, Archibald JM. Endosymbiosis: Did Plastids Evolve from a Freshwater Cyanobacterium? Current Biology : Cb. 27: R103-R105. PMID 28171752 DOI: 10.1016/J.Cub.2016.12.006 |
0.391 |
|
2017 |
de Vries J, Archibald JM, Gould SB. The carboxy terminus of YCF1 contains a motif conserved throughout >500 million years of streptophyte evolution. Genome Biology and Evolution. PMID 28164224 DOI: 10.1093/Gbe/Evx013 |
0.55 |
|
2017 |
Sibbald SJ, Cenci U, Colp M, Eglit Y, O'Kelly CJ, Archibald JM. Diversity and Evolution of Paramoeba spp. and their Kinetoplastid Endosymbionts. The Journal of Eukaryotic Microbiology. PMID 28150358 DOI: 10.1111/Jeu.12394 |
0.776 |
|
2016 |
David V, Archibald JM. Evolution: Plumbing the Depths of Diplonemid Diversity. Current Biology : Cb. 26: R1290-R1292. PMID 27997843 DOI: 10.1016/J.Cub.2016.10.050 |
0.492 |
|
2016 |
Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews. Microbiology. PMID 27867198 DOI: 10.1038/Nrmicro.2016.160 |
0.492 |
|
2016 |
Cenci U, Moog D, Curtis BA, Tanifuji G, Eme L, Lukeš J, Archibald JM. Heme pathway evolution in kinetoplastid protists. Bmc Evolutionary Biology. 16: 109. PMID 27193376 DOI: 10.1186/S12862-016-0664-6 |
0.79 |
|
2016 |
de Vries J, Stanton A, Archibald JM, Gould SB. Streptophyte Terrestrialization in Light of Plastid Evolution. Trends in Plant Science. PMID 26895731 DOI: 10.1016/J.Tplants.2016.01.021 |
0.41 |
|
2016 |
Tanifuji G, Archibald JM, Hashimoto T. Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics. Scientific Reports. 6: 21016. PMID 26888293 DOI: 10.1038/Srep21016 |
0.49 |
|
2015 |
David V, Flegontov P, Gerasimov E, Tanifuji G, Hashimi H, Logacheva MD, Maruyama S, Onodera NT, Gray MW, Archibald JM, Lukeš J. Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid. Mbio. 6. PMID 26628723 DOI: 10.1128/Mbio.01498-15 |
0.394 |
|
2015 |
Moog D, Rensing SA, Archibald JM, Maier UG, Ullrich KK. Localization and evolution of putative triose phosphate translocators in the diatom Phaeodactylum tricornutum. Genome Biology and Evolution. PMID 26454011 DOI: 10.1093/Gbe/Evv190 |
0.728 |
|
2015 |
Archibald JM. Endosymbiosis and Eukaryotic Cell Evolution. Current Biology : Cb. 25: R911-21. PMID 26439354 DOI: 10.1016/J.Cub.2015.07.055 |
0.463 |
|
2015 |
Archibald JM. Evolution: Gene transfer in complex cells. Nature. 524: 423-4. PMID 26287464 DOI: 10.1038/Nature15205 |
0.532 |
|
2015 |
Gile GH, Moog D, Slamovits CH, Maier UG, Archibald JM. Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes. Genome Biology and Evolution. 7: 1728-42. PMID 25994931 DOI: 10.1093/Gbe/Evv095 |
0.789 |
|
2015 |
Archibald JM. Genomic perspectives on the birth and spread of plastids. Proceedings of the National Academy of Sciences of the United States of America. 112: 10147-53. PMID 25902528 DOI: 10.1073/Pnas.1421374112 |
0.466 |
|
2014 |
McRose D, Guo J, Monier A, Sudek S, Wilken S, Yan S, Mock T, Archibald JM, Begley TP, Reyes-Prieto A, Worden AZ. Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages. The Isme Journal. 8: 2517-29. PMID 25171333 DOI: 10.1038/Ismej.2014.146 |
0.441 |
|
2014 |
Nakayama T, Kamikawa R, Tanifuji G, Kashiyama Y, Ohkouchi N, Archibald JM, Inagaki Y. Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 111: 11407-12. PMID 25049384 DOI: 10.1073/Pnas.1405222111 |
0.53 |
|
2014 |
Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. Plos Biology. 12: e1001889. PMID 24959919 DOI: 10.1371/Journal.Pbio.1001889 |
0.828 |
|
2014 |
Tanifuji G, Onodera NT, Brown MW, Curtis BA, Roger AJ, Ka-Shu Wong G, Melkonian M, Archibald JM. Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae. Bmc Genomics. 15: 374. PMID 24885563 DOI: 10.1186/1471-2164-15-374 |
0.68 |
|
2014 |
Hirakawa Y, Suzuki S, Archibald JM, Keeling PJ, Ishida K. Overexpression of molecular chaperone genes in nucleomorph genomes. Molecular Biology and Evolution. 31: 1437-43. PMID 24603278 DOI: 10.1093/Molbev/Msu092 |
0.764 |
|
2014 |
Tanifuji G, Onodera NT, Moore CE, Archibald JM. Reduced nuclear genomes maintain high gene transcription levels. Molecular Biology and Evolution. 31: 625-35. PMID 24336878 DOI: 10.1093/Molbev/Mst254 |
0.52 |
|
2013 |
Eveleigh RJ, Meehan CJ, Archibald JM, Beiko RG. Being Aquifex aeolicus: Untangling a hyperthermophile's checkered past. Genome Biology and Evolution. 5: 2478-97. PMID 24281050 DOI: 10.1093/Gbe/Evt195 |
0.542 |
|
2013 |
Flegontov P, Votýpka J, Skalický T, Logacheva MD, Penin AA, Tanifuji G, Onodera NT, Kondrashov AS, Volf P, Archibald JM, Lukeš J. Paratrypanosoma is a novel early-branching trypanosomatid. Current Biology : Cb. 23: 1787-93. PMID 24012313 DOI: 10.1016/J.Cub.2013.07.045 |
0.501 |
|
2013 |
Smith DR, Hua J, Archibald JM, Lee RW. Palindromic genes in the linear mitochondrial genome of the nonphotosynthetic green alga Polytomella magna. Genome Biology and Evolution. 5: 1661-7. PMID 23940100 DOI: 10.1093/Gbe/Evt122 |
0.532 |
|
2013 |
Maruyama S, Eveleigh RJ, Archibald JM. Treetrimmer: a method for phylogenetic dataset size reduction. Bmc Research Notes. 6: 145. PMID 23587045 DOI: 10.1186/1756-0500-6-145 |
0.428 |
|
2013 |
Kim E, Archibald JM. Ultrastructure and molecular phylogeny of the cryptomonad Goniomonas avonlea sp. nov. Protist. 164: 160-82. PMID 23127606 DOI: 10.1016/J.Protis.2012.10.002 |
0.555 |
|
2013 |
Tanifuji G, Archibald JM. Nucleomorph comparative genomics Endosymbiosis. 197-213. DOI: 10.1007/978-3-7091-1303-5_11 |
0.339 |
|
2012 |
Nakayama T, Ishida K, Archibald JM. Broad distribution of TPI-GAPDH fusion proteins among eukaryotes: evidence for glycolytic reactions in the mitochondrion? Plos One. 7: e52340. PMID 23284996 DOI: 10.1371/Journal.Pone.0052340 |
0.582 |
|
2012 |
Hopkins JF, Spencer DF, Laboissiere S, Neilson JA, Eveleigh RJ, Durnford DG, Gray MW, Archibald JM. Proteomics reveals plastid- and periplastid-targeted proteins in the chlorarachniophyte alga Bigelowiella natans. Genome Biology and Evolution. 4: 1391-406. PMID 23221610 DOI: 10.1093/Gbe/Evs115 |
0.373 |
|
2012 |
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, ... ... Archibald JM, et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature. 492: 59-65. PMID 23201678 DOI: 10.1038/Nature11681 |
0.832 |
|
2012 |
Moore CE, Curtis B, Mills T, Tanifuji G, Archibald JM. Nucleomorph genome sequence of the cryptophyte alga Chroomonas mesostigmatica CCMP1168 reveals lineage-specific gene loss and genome complexity. Genome Biology and Evolution. 4: 1162-75. PMID 23042551 DOI: 10.1093/Gbe/Evs090 |
0.561 |
|
2012 |
Onodera NT, Ryu J, Durbic T, Nislow C, Archibald JM, Rohde JR. Genome sequence of Shigella flexneri serotype 5a strain M90T Sm. Journal of Bacteriology. 194: 3022. PMID 22582379 DOI: 10.1128/Jb.00393-12 |
0.402 |
|
2012 |
Nakayama T, Archibald JM. Evolving a photosynthetic organelle. Bmc Biology. 10: 35. PMID 22531210 DOI: 10.1186/1741-7007-10-35 |
0.428 |
|
2012 |
Archibald JM. Lynn Margulis (1938–2011) Current Biology. 22: R4-R6. DOI: 10.1016/J.Cub.2011.12.003 |
0.477 |
|
2012 |
Archibald JM. The Evolution of Algae by Secondary and Tertiary Endosymbiosis Advances in Botanical Research. 64: 87-118. DOI: 10.1016/B978-0-12-391499-6.00003-7 |
0.467 |
|
2011 |
McInerney JO, Martin WF, Koonin EV, Allen JF, Galperin MY, Lane N, Archibald JM, Embley TM. Planctomycetes and eukaryotes: a case of analogy not homology. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 810-7. PMID 21858844 DOI: 10.1002/Bies.201100045 |
0.427 |
|
2011 |
Lukeš J, Archibald JM, Keeling PJ, Doolittle WF, Gray MW. How a neutral evolutionary ratchet can build cellular complexity. Iubmb Life. 63: 528-37. PMID 21698757 DOI: 10.1002/Iub.489 |
0.735 |
|
2011 |
Tanifuji G, Kim E, Onodera NT, Gibeault R, Dlutek M, Cawthorn RJ, Fiala I, Lukes J, Greenwood SJ, Archibald JM. Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont. Eukaryotic Cell. 10: 1143-6. PMID 21666073 DOI: 10.1128/Ec.05027-11 |
0.62 |
|
2011 |
Doolittle WF, Lukeš J, Archibald JM, Keeling PJ, Gray MW. Comment on "Does constructive neutral evolution play an important role in the origin of cellular complexity?" DOI 10.1002/bies.201100010. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 427-9. PMID 21538416 DOI: 10.1002/Bies.201100039 |
0.743 |
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2011 |
Maruyama S, Suzaki T, Weber AP, Archibald JM, Nozaki H. Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids. Bmc Evolutionary Biology. 11: 105. PMID 21501489 DOI: 10.1186/1471-2148-11-105 |
0.53 |
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2011 |
Richards TA, Archibald JM. Cell evolution: gene transfer agents and the origin of mitochondria. Current Biology : Cb. 21: R112-4. PMID 21300273 DOI: 10.1016/J.Cub.2010.12.036 |
0.488 |
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2011 |
Kim E, Harrison JW, Sudek S, Jones MD, Wilcox HM, Richards TA, Worden AZ, Archibald JM. Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proceedings of the National Academy of Sciences of the United States of America. 108: 1496-500. PMID 21205890 DOI: 10.1073/Pnas.1013337108 |
0.6 |
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2011 |
Tanifuji G, Onodera NT, Wheeler TJ, Dlutek M, Donaher N, Archibald JM. Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set. Genome Biology and Evolution. 3: 44-54. PMID 21147880 DOI: 10.1093/Gbe/Evq082 |
0.555 |
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2011 |
Archibald JM. Origin of eukaryotic cells: 40 years on Symbiosis. 54: 69-86. DOI: 10.1007/S13199-011-0129-Z |
0.447 |
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2010 |
Archibald JM, Richards TA. Gene transfer: anything goes in plant mitochondria. Bmc Biology. 8: 147. PMID 21176244 DOI: 10.1186/1741-7007-8-147 |
0.405 |
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2010 |
Gray MW, Lukes J, Archibald JM, Keeling PJ, Doolittle WF. Cell biology. Irremediable complexity? Science (New York, N.Y.). 330: 920-1. PMID 21071654 DOI: 10.1126/Science.1198594 |
0.722 |
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2010 |
Curtis BA, Archibald JM. A spliceosomal intron of mitochondrial DNA origin. Current Biology : Cb. 20: R919-20. PMID 21056829 DOI: 10.1016/J.Cub.2010.09.038 |
0.429 |
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2010 |
Silver TD, Moore CE, Archibald JM. Nucleomorph ribosomal DNA and telomere dynamics in chlorarachniophyte algae. The Journal of Eukaryotic Microbiology. 57: 453-9. PMID 21040099 DOI: 10.1111/J.1550-7408.2010.00511.X |
0.483 |
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2010 |
Tanifuji G, Archibald JM. Actin gene family dynamics in cryptomonads and red algae. Journal of Molecular Evolution. 71: 169-79. PMID 20700735 DOI: 10.1007/S00239-010-9375-6 |
0.492 |
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2010 |
Kim E, Archibald JM. Plastid evolution: gene transfer and the maintenance of 'stolen' organelles. Bmc Biology. 8: 73. PMID 20594287 DOI: 10.1186/1741-7007-8-73 |
0.619 |
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2010 |
Kim E, Park JS, Simpson AG, Matsunaga S, Watanabe M, Murakami A, Sommerfeld K, Onodera NT, Archibald JM. Complex array of endobionts in Petalomonas sphagnophila, a large heterotrophic euglenid protist from Sphagnum-dominated peatlands. The Isme Journal. 4: 1108-20. PMID 20376101 DOI: 10.1038/Ismej.2010.40 |
0.589 |
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2009 |
Donaher N, Tanifuji G, Onodera NT, Malfatti SA, Chain PS, Hara Y, Archibald JM. The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate. Genome Biology and Evolution. 1: 439-48. PMID 20333213 DOI: 10.1093/Gbe/Evp047 |
0.509 |
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2009 |
Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biology and Evolution. 1: 231-8. PMID 20333193 DOI: 10.1093/Gbe/Evp022 |
0.732 |
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2009 |
Elias M, Archibald JM. Sizing up the genomic footprint of endosymbiosis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 1273-9. PMID 19921698 DOI: 10.1002/Bies.200900117 |
0.544 |
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2009 |
Moore CE, Archibald JM. Nucleomorph genomes. Annual Review of Genetics. 43: 251-64. PMID 19686079 DOI: 10.1146/annurev-genet-102108-134809 |
0.423 |
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2009 |
Archibald JM, Lane CE. Going, going, not quite gone: nucleomorphs as a case study in nuclear genome reduction. The Journal of Heredity. 100: 582-90. PMID 19617523 DOI: 10.1093/Jhered/Esp055 |
0.518 |
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2009 |
Elias M, Archibald JM. The RJL family of small GTPases is an ancient eukaryotic invention probably functionally associated with the flagellar apparatus. Gene. 442: 63-72. PMID 19393304 DOI: 10.1016/J.Gene.2009.04.011 |
0.413 |
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2009 |
Archibald JM. Genomics. Green evolution, green revolution. Science (New York, N.Y.). 324: 191-2. PMID 19359572 DOI: 10.1126/Science.1172972 |
0.471 |
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2009 |
Archibald JM. The puzzle of plastid evolution. Current Biology : Cb. 19: R81-8. PMID 19174147 DOI: 10.1016/J.Cub.2008.11.067 |
0.421 |
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2009 |
Ota S, Silver TD, Archibald JM, Ishida KI. Lotharella oceanica sp. nov. - A new planktonic chlorarachniophyte studied by light and electron microscopy Phycologia. 48: 315-323. DOI: 10.2216/09-02.1 |
0.537 |
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2009 |
Archibald JM. The origin and spread of eukaryotic photosynthesis: Evolving views in light of genomics Botanica Marina. 52: 95-103. DOI: 10.1515/Bot.2008.060 |
0.443 |
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2009 |
Lane CE, Archibald JM. Reply to Bodył, Stiller and Mackiewicz: "Chromalveolate plastids: direct descent or multiple endosymbioses?" Trends in Ecology and Evolution. 24: 121-122. DOI: 10.1016/J.Tree.2008.11.002 |
0.504 |
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2009 |
Kim E, Archibald JM. Diversity and evolution of plastids and their genomes Plant Cell Monographs. 13: 1-40. DOI: 10.1007/978-3-540-68696-5_1 |
0.405 |
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2008 |
Lane CE, Archibald JM. NEW MARINE MEMBERS OF THE GENUS HEMISELMIS (CRYPTOMONADALES, CRYPTOPHYCEAE)(1). Journal of Phycology. 44: 439-50. PMID 27041199 DOI: 10.1111/J.1529-8817.2008.00486.X |
0.326 |
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2008 |
Phipps KD, Donaher NA, Lane CE, Archibald JM. NUCLEOMORPH KARYOTYPE DIVERSITY IN THE FRESHWATER CRYPTOPHYTE GENUS CRYPTOMONAS(1). Journal of Phycology. 44: 11-4. PMID 27041033 DOI: 10.1111/J.1529-8817.2007.00434.X |
0.505 |
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2008 |
Archibald JM. The eocyte hypothesis and the origin of eukaryotic cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 20049-50. PMID 19091952 DOI: 10.1073/Pnas.0811118106 |
0.414 |
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2008 |
Archibald JM. Plastid evolution: remnant algal genes in ciliates. Current Biology : Cb. 18: R663-R665. PMID 18682209 DOI: 10.1016/J.Cub.2008.06.031 |
0.476 |
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2008 |
Kim E, Lane CE, Curtis BA, Kozera C, Bowman S, Archibald JM. Complete sequence and analysis of the mitochondrial genome of Hemiselmis andersenii CCMP644 (Cryptophyceae). Bmc Genomics. 9: 215. PMID 18474103 DOI: 10.1186/1471-2164-9-215 |
0.636 |
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2008 |
Keeling PJ, Archibald JM. Organelle evolution: what's in a name? Current Biology : Cb. 18: R345-7. PMID 18430636 DOI: 10.1016/J.Cub.2008.02.065 |
0.704 |
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2008 |
Khan H, Archibald JM. Lateral transfer of introns in the cryptophyte plastid genome. Nucleic Acids Research. 36: 3043-53. PMID 18397952 DOI: 10.1093/Nar/Gkn095 |
0.478 |
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2008 |
Lane CE, Archibald JM. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends in Ecology & Evolution. 23: 268-75. PMID 18378040 DOI: 10.1016/J.Tree.2008.02.004 |
0.539 |
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2008 |
Cuvelier ML, Ortiz A, Kim E, Moehlig H, Richardson DE, Heidelberg JF, Archibald JM, Worden AZ. Widespread distribution of a unique marine protistan lineage. Environmental Microbiology. 10: 1621-34. PMID 18341584 DOI: 10.1111/J.1462-2920.2008.01580.X |
0.566 |
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2008 |
Fong A, Archibald JM. Evolutionary dynamics of light-independent protochlorophyllide oxidoreductase genes in the secondary plastids of cryptophyte algae. Eukaryotic Cell. 7: 550-3. PMID 18178774 DOI: 10.1128/Ec.00396-07 |
0.396 |
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2007 |
Lane CE, van den Heuvel K, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM. Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proceedings of the National Academy of Sciences of the United States of America. 104: 19908-13. PMID 18077423 DOI: 10.1073/Pnas.0707419104 |
0.52 |
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2007 |
Bhattacharya D, Archibald JM, Weber AP, Reyes-Prieto A. How do endosymbionts become organelles? Understanding early events in plastid evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 1239-46. PMID 18027391 DOI: 10.1002/Bies.20671 |
0.438 |
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2007 |
Silver TD, Koike S, Yabuki A, Kofuji R, Archibald JM, Ishida K. Phylogeny and nucleomorph karyotype diversity of chlorarachniophyte algae. The Journal of Eukaryotic Microbiology. 54: 403-10. PMID 17910684 DOI: 10.1111/J.1550-7408.2007.00279.X |
0.659 |
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2007 |
Adl SM, Leander BS, Simpson AG, Archibald JM, Anderson OR, Bass D, Bowser SS, Brugerolle G, Farmer MA, Karpov S, Kolisko M, Lane CE, Lodge DJ, Mann DG, Meisterfeld R, et al. Diversity, nomenclature, and taxonomy of protists. Systematic Biology. 56: 684-9. PMID 17661235 DOI: 10.1080/10635150701494127 |
0.768 |
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2007 |
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM. Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24: 1832-42. PMID 17522086 DOI: 10.1093/Molbev/Msm101 |
0.561 |
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2007 |
Archibald JM. Nucleomorph genomes: structure, function, origin and evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 392-402. PMID 17373660 DOI: 10.1002/Bies.20551 |
0.537 |
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2007 |
Khan H, Kozera C, Curtis BA, Bussey JT, Theophilou S, Bowman S, Archibald JM. Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae. Journal of Molecular Evolution. 64: 223-36. PMID 17211547 DOI: 10.1007/S00239-006-0088-9 |
0.525 |
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2007 |
Archibald J. Genomics and Evolution of Microbial Eukaryotes. Edited by Laura A Katz and , Debashish Bhattacharya. Oxford and New York: Oxford University Press. $110.00. xi + 243 p; ill.; index. ISBN: 0‐19‐856974‐2. 2006. The Quarterly Review of Biology. 82: 275-276. DOI: 10.1086/523144 |
0.308 |
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2006 |
Archibald JM. Algal genomics: exploring the imprint of endosymbiosis. Current Biology : Cb. 16: R1033-5. PMID 17174910 DOI: 10.1016/J.Cub.2006.11.008 |
0.534 |
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2006 |
Lane CE, Archibald JM. Novel nucleomorph genome architecture in the cryptomonad genus hemiselmis. The Journal of Eukaryotic Microbiology. 53: 515-21. PMID 17123416 DOI: 10.1111/J.1550-7408.2006.00135.X |
0.477 |
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2006 |
Ruiz-Trillo I, Lane CE, Archibald JM, Roger AJ. Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica. The Journal of Eukaryotic Microbiology. 53: 379-84. PMID 16968456 DOI: 10.1111/J.1550-7408.2006.00118.X |
0.657 |
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2006 |
Archibald JM. Endosymbiosis: double-take on plastid origins. Current Biology : Cb. 16: R690-2. PMID 16950094 DOI: 10.1016/J.Cub.2006.08.006 |
0.362 |
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2006 |
Archibald JM. Genome complexity in a lean, mean photosynthetic machine. Proceedings of the National Academy of Sciences of the United States of America. 103: 11433-4. PMID 16868076 DOI: 10.1073/Pnas.0605255103 |
0.464 |
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2006 |
Lane CE, Khan H, MacKinnon M, Fong A, Theophilou S, Archibald JM. Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Insight into the diversity and evolution of the cryptomonad nucleomorph genome. Molecular Biology and Evolution. 23: 856-65. PMID 16306383 DOI: 10.1093/Molbev/Msj066 |
0.54 |
|
2006 |
Bhattacharya D, Archibald JM. Response to Theissen and Martin Current Biology. 16: R1017-R1018. DOI: 10.1016/J.Cub.2006.11.021 |
0.433 |
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2005 |
Archibald JM. Jumping genes and shrinking genomes--probing the evolution of eukaryotic photosynthesis with genomics. Iubmb Life. 57: 539-47. PMID 16118111 DOI: 10.1080/15216540500167732 |
0.538 |
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2005 |
Patron NJ, Waller RF, Archibald JM, Keeling PJ. Complex protein targeting to dinoflagellate plastids. Journal of Molecular Biology. 348: 1015-24. PMID 15843030 DOI: 10.1016/J.Jmb.2005.03.030 |
0.775 |
|
2005 |
Kim JC, Ou YY, Badano JL, Esmail MA, Leitch CC, Fiedrich E, Beales PL, Archibald JM, Katsanis N, Rattner JB, Leroux MR. MKKS/BBS6, a divergent chaperonin-like protein linked to the obesity disorder Bardet-Biedl syndrome, is a novel centrosomal component required for cytokinesis. Journal of Cell Science. 118: 1007-20. PMID 15731008 DOI: 10.1242/Jcs.01676 |
0.32 |
|
2005 |
ARCHIBALD JM. Phagotrophy in chlorarachniophyte algae: implications for eukaryotic genome evolution The Journal of Eukaryotic Microbiology. 52: 7S-27S. DOI: 10.1111/J.1550-7408.2005.05202003_1_5.X |
0.503 |
|
2004 |
Keeling PJ, Archibald JM, Fast NM, Palmer JD. Comment on "The evolution of modern eukaryotic phytoplankton". Science (New York, N.Y.). 306: 2191; author reply 2. PMID 15618503 DOI: 10.1126/Science.1103879 |
0.684 |
|
2004 |
Rogers MB, Archibald JM, Field MA, Li C, Striepen B, Keeling PJ. Plastid-targeting peptides from the chlorarachniophyte Bigelowiella natans. The Journal of Eukaryotic Microbiology. 51: 529-35. PMID 15537087 DOI: 10.1111/J.1550-7408.2004.Tb00288.X |
0.744 |
|
2004 |
Archibald JM, Keeling PJ. Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens. The Journal of Eukaryotic Microbiology. 51: 113-8. PMID 15068273 DOI: 10.1111/J.1550-7408.2004.Tb00172.X |
0.709 |
|
2003 |
Longet D, Archibald JM, Keeling PJ, Pawlowski J. Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. International Journal of Systematic and Evolutionary Microbiology. 53: 1735-9. PMID 14657101 DOI: 10.1099/Ijs.0.02597-0 |
0.671 |
|
2003 |
Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proceedings of the National Academy of Sciences of the United States of America. 100: 7678-83. PMID 12777624 DOI: 10.1073/Pnas.1230951100 |
0.808 |
|
2003 |
Archibald JM, Teh EM, Keeling PJ. Novel ubiquitin fusion proteins: ribosomal protein P1 and actin. Journal of Molecular Biology. 328: 771-8. PMID 12729753 DOI: 10.1016/S0022-2836(03)00374-7 |
0.639 |
|
2003 |
Archibald JM, Keeling PJ. Comparative genomics. Plant genomes: cyanobacterial genes revealed. Heredity. 90: 2-3. PMID 12522415 DOI: 10.1038/Sj.Hdy.6800204 |
0.712 |
|
2003 |
Archibald JM, Longet D, Pawlowski J, Keeling PJ. A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Molecular Biology and Evolution. 20: 62-6. PMID 12519907 DOI: 10.1093/Molbev/Msg006 |
0.684 |
|
2002 |
Archibald JM, Keeling PJ. Recycled plastids: a 'green movement' in eukaryotic evolution. Trends in Genetics : Tig. 18: 577-84. PMID 12414188 DOI: 10.1016/S0168-9525(02)02777-4 |
0.692 |
|
2002 |
Archibald JM, Roger AJ. Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals. Journal of Molecular Evolution. 55: 232-45. PMID 12107599 DOI: 10.1007/S00239-002-2321-5 |
0.589 |
|
2002 |
Archibald JM, O'Kelly CJ, Doolittle WF. The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution. Molecular Biology and Evolution. 19: 422-31. PMID 11919283 DOI: 10.1093/Oxfordjournals.Molbev.A004097 |
0.736 |
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2002 |
Archibald JM, Roger AJ. Gene duplication and gene conversion shape the evolution of archaeal chaperonins. Journal of Molecular Biology. 316: 1041-50. PMID 11884142 DOI: 10.1006/Jmbi.2002.5409 |
0.597 |
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2001 |
Archibald JM, Blouin C, Doolittle WF. Gene duplication and the evolution of group II chaperonins: implications for structure and function. Journal of Structural Biology. 135: 157-69. PMID 11580265 DOI: 10.1006/Jsbi.2001.4353 |
0.724 |
|
2001 |
Archibald JM, Cavalier-Smith T, Maier U, Douglas S. Molecular chaperones encoded by a reduced nucleus: the cryptomonad nucleomorph. Journal of Molecular Evolution. 52: 490-501. PMID 11443352 DOI: 10.1007/S002390010179 |
0.386 |
|
2000 |
Archibald JM, Logsdon JM, Doolittle WF. Origin and evolution of eukaryotic chaperonins: phylogenetic evidence for ancient duplications in CCT genes. Molecular Biology and Evolution. 17: 1456-66. PMID 11018153 DOI: 10.1093/Oxfordjournals.Molbev.A026246 |
0.728 |
|
1999 |
Archibald JM, Logsdon JM, Doolittle WF. Recurrent paralogy in the evolution of archaeal chaperonins. Current Biology : Cb. 9: 1053-6. PMID 10508614 DOI: 10.1016/S0960-9822(99)80457-6 |
0.733 |
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