John M. Archibald, Ph.D. - Publications

Affiliations: 
Dalhousie University, Halifax, Nova Scotia, Canada 
Area:
genome evolution

127 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Åsman AKM, Curtis BA, Archibald JM. Nucleomorph small RNAs in cryptophyte and chlorarachniophyte algae. Genome Biology and Evolution. PMID 30949682 DOI: 10.1093/gbe/evz064  1
2019 Grisdale CJ, Smith DR, Archibald JM. Relative mutation rates in nucleomorph-bearing algae. Genome Biology and Evolution. PMID 30859201 DOI: 10.1093/gbe/evz056  0.8
2019 Sibbald SJ, Hopkins JF, Filloramo GV, Archibald JM. Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis. Bmc Genomics. 20: 38. PMID 30642248 DOI: 10.1186/s12864-018-5412-4  1
2018 Cenci U, Sibbald SJ, Curtis BA, Kamikawa R, Eme L, Moog D, Henrissat B, Maréchal E, Chabi M, Djemiel C, Roger AJ, Kim E, Archibald JM. Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. Bmc Biology. 16: 137. PMID 30482201 DOI: 10.1186/s12915-018-0593-5  1
2018 Lukeš J, Wheeler R, Jirsová D, David V, Archibald JM. Massive mitochondrial DNA content in diplonemid and kinetoplastid protists. Iubmb Life. PMID 30291814 DOI: 10.1002/iub.1894  1
2018 de Vries S, de Vries J, von Dahlen JK, Gould SB, Archibald JM, Rose LE, Slamovits CH. On plant defense signaling networks and early land plant evolution. Communicative & Integrative Biology. 11: 1-14. PMID 30214675 DOI: 10.1080/19420889.2018.1486168  0.8
2018 de Vries J, Archibald JM. Plastid genomes. Current Biology : Cb. 28: R336-R337. PMID 29689202 DOI: 10.1016/j.cub.2018.01.027  0.32
2018 Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, et al. 10KP: A phylodiverse genome sequencing plan. Gigascience. 7: 1-9. PMID 29618049 DOI: 10.1093/gigascience/giy013  1
2018 de Vries J, Curtis BA, Gould SB, Archibald JM. Embryophyte stress signaling evolved in the algal progenitors of land plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 29581286 DOI: 10.1073/pnas.1719230115  1
2018 Raina JB, Eme L, Pollock FJ, Spang A, Archibald JM, Williams TA. Symbiosis in the microbial world: from ecology to genome evolution. Biology Open. 7. PMID 29472284 DOI: 10.1242/bio.032524  0.56
2018 de Vries J, Archibald JM. Plant evolution: landmarks on the path to terrestrial life. The New Phytologist. PMID 29318635 DOI: 10.1111/nph.14975  0.32
2017 Tanifuji G, Cenci U, Moog D, Dean S, Nakayama T, David V, Fiala I, Curtis BA, Sibbald SJ, Onodera NT, Colp M, Flegontov P, Johnson-MacKinnon J, McPhee M, Inagaki Y, ... ... Archibald JM, et al. Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis. Scientific Reports. 7: 11688. PMID 28916813 DOI: 10.1038/s41598-017-11866-x  1
2017 Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, ... ... Archibald JM, et al. Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. Plos Biology. 15: e2003769. PMID 28892507 DOI: 10.1371/journal.pbio.2003769  1
2017 Kim JI, Moore CE, Archibald JM, Bhattacharya D, Yi G, Yoon HS, Shin W. Evolutionary Dynamics of Cryptophyte Plastid Genomes. Genome Biology and Evolution. 9: 1859-1872. PMID 28854597 DOI: 10.1093/gbe/evx123  0.36
2017 Sibbald SJ, Archibald JM. More protist genomes needed. Nature Ecology & Evolution. 1: 145. PMID 28812681 DOI: 10.1038/s41559-017-0145  1
2017 Kamikawa R, Moog D, Zauner S, Tanifuji G, Ishida KI, Miyashita H, Mayama S, Hashimoto T, Maier UG, Archibald JM, Inagaki Y. A non-photosynthetic diatom reveals early steps of reductive evolution in plastids. Molecular Biology and Evolution. PMID 28549159 DOI: 10.1093/molbev/msx172  1
2017 Muñoz-Gómez SA, Mejía-Franco FG, Durnin K, Colp M, Grisdale CJ, Archibald JM, Slamovits CH. The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known. Current Biology : Cb. PMID 28528908 DOI: 10.1016/j.cub.2017.04.054  0.8
2017 de Vries J, de Vries S, Slamovits CH, Rose LE, Archibald JM. How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae? Plant & Cell Physiology. PMID 28340089 DOI: 10.1093/pcp/pcx037  0.8
2017 Eme L, Gentekaki E, Curtis B, Archibald JM, Roger AJ. Lateral Gene Transfer in the Adaptation of the Anaerobic Parasite Blastocystis to the Gut. Current Biology : Cb. PMID 28262486 DOI: 10.1016/j.cub.2017.02.003  1
2017 de Vries J, Archibald JM. Endosymbiosis: Did Plastids Evolve from a Freshwater Cyanobacterium? Current Biology : Cb. 27: R103-R105. PMID 28171752 DOI: 10.1016/j.cub.2016.12.006  0.32
2017 de Vries J, Archibald JM, Gould SB. The carboxy terminus of YCF1 contains a motif conserved throughout >500 million years of streptophyte evolution. Genome Biology and Evolution. PMID 28164224 DOI: 10.1093/gbe/evx013  0.32
2017 Sibbald SJ, Cenci U, Colp M, Eglit Y, O'Kelly CJ, Archibald JM. Diversity and Evolution of Paramoeba spp. and their Kinetoplastid Endosymbionts. The Journal of Eukaryotic Microbiology. PMID 28150358 DOI: 10.1111/jeu.12394  1
2016 Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews. Microbiology. PMID 27867198 DOI: 10.1038/nrmicro.2016.160  0.44
2016 Cenci U, Moog D, Curtis BA, Tanifuji G, Eme L, Lukeš J, Archibald JM. Heme pathway evolution in kinetoplastid protists. Bmc Evolutionary Biology. 16: 109. PMID 27193376 DOI: 10.1186/s12862-016-0664-6  1
2016 de Vries J, Stanton A, Archibald JM, Gould SB. Streptophyte Terrestrialization in Light of Plastid Evolution. Trends in Plant Science. PMID 26895731 DOI: 10.1016/j.tplants.2016.01.021  0.32
2016 Tanifuji G, Archibald JM, Hashimoto T. Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics. Scientific Reports. 6: 21016. PMID 26888293 DOI: 10.1038/srep21016  1
2015 David V, Flegontov P, Gerasimov E, Tanifuji G, Hashimi H, Logacheva MD, Maruyama S, Onodera NT, Gray MW, Archibald JM, Lukeš J. Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid. Mbio. 6. PMID 26628723 DOI: 10.1128/mBio.01498-15  1
2015 Moog D, Rensing SA, Archibald JM, Maier UG, Ullrich KK. Localization and evolution of putative triose phosphate translocators in the diatom Phaeodactylum tricornutum. Genome Biology and Evolution. PMID 26454011 DOI: 10.1093/gbe/evv190  1
2015 Archibald JM. Endosymbiosis and Eukaryotic Cell Evolution. Current Biology : Cb. 25: R911-21. PMID 26439354 DOI: 10.1016/j.cub.2015.07.055  1
2015 Archibald JM. Evolution: Gene transfer in complex cells. Nature. 524: 423-4. PMID 26287464 DOI: 10.1038/nature15205  1
2015 Gile GH, Moog D, Slamovits CH, Maier UG, Archibald JM. Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes. Genome Biology and Evolution. 7: 1728-42. PMID 25994931 DOI: 10.1093/gbe/evv095  1
2015 Archibald JM. Genomic perspectives on the birth and spread of plastids. Proceedings of the National Academy of Sciences of the United States of America. 112: 10147-53. PMID 25902528 DOI: 10.1073/pnas.1421374112  1
2014 McRose D, Guo J, Monier A, Sudek S, Wilken S, Yan S, Mock T, Archibald JM, Begley TP, Reyes-Prieto A, Worden AZ. Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages. The Isme Journal. 8: 2517-29. PMID 25171333 DOI: 10.1038/ismej.2014.146  1
2014 Nakayama T, Kamikawa R, Tanifuji G, Kashiyama Y, Ohkouchi N, Archibald JM, Inagaki Y. Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 111: 11407-12. PMID 25049384 DOI: 10.1073/pnas.1405222111  1
2014 Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. Plos Biology. 12: e1001889. PMID 24959919 DOI: 10.1371/journal.pbio.1001889  1
2014 Tanifuji G, Onodera NT, Brown MW, Curtis BA, Roger AJ, Ka-Shu Wong G, Melkonian M, Archibald JM. Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae. Bmc Genomics. 15: 374. PMID 24885563 DOI: 10.1186/1471-2164-15-374  1
2014 Hirakawa Y, Suzuki S, Archibald JM, Keeling PJ, Ishida K. Overexpression of molecular chaperone genes in nucleomorph genomes. Molecular Biology and Evolution. 31: 1437-43. PMID 24603278 DOI: 10.1093/molbev/msu092  1
2014 Tanifuji G, Onodera NT, Moore CE, Archibald JM. Reduced nuclear genomes maintain high gene transcription levels. Molecular Biology and Evolution. 31: 625-35. PMID 24336878 DOI: 10.1093/molbev/mst254  1
2014 Archibald JM. Plastid origins Organelle Genetics: Evolution of Organelle Genomes and Gene Expression. 19-38. DOI: 10.1007/978-3-642-22380-8_2  1
2014 Archibald J. The cellular revolution Scientist. 28.  1
2013 Eveleigh RJ, Meehan CJ, Archibald JM, Beiko RG. Being Aquifex aeolicus: Untangling a hyperthermophile's checkered past. Genome Biology and Evolution. 5: 2478-97. PMID 24281050 DOI: 10.1093/gbe/evt195  1
2013 Flegontov P, Votýpka J, Skalický T, Logacheva MD, Penin AA, Tanifuji G, Onodera NT, Kondrashov AS, Volf P, Archibald JM, Lukeš J. Paratrypanosoma is a novel early-branching trypanosomatid. Current Biology : Cb. 23: 1787-93. PMID 24012313 DOI: 10.1016/j.cub.2013.07.045  1
2013 Smith DR, Hua J, Archibald JM, Lee RW. Palindromic genes in the linear mitochondrial genome of the nonphotosynthetic green alga Polytomella magna. Genome Biology and Evolution. 5: 1661-7. PMID 23940100 DOI: 10.1093/gbe/evt122  1
2013 Maruyama S, Eveleigh RJ, Archibald JM. Treetrimmer: a method for phylogenetic dataset size reduction. Bmc Research Notes. 6: 145. PMID 23587045 DOI: 10.1186/1756-0500-6-145  1
2013 Kim E, Archibald JM. Ultrastructure and molecular phylogeny of the cryptomonad Goniomonas avonlea sp. nov. Protist. 164: 160-82. PMID 23127606 DOI: 10.1016/j.protis.2012.10.002  1
2013 Tanifuji G, Archibald JM. Nucleomorph comparative genomics Endosymbiosis. 197-213. DOI: 10.1007/978-3-7091-1303-5_11  1
2012 Nakayama T, Ishida K, Archibald JM. Broad distribution of TPI-GAPDH fusion proteins among eukaryotes: evidence for glycolytic reactions in the mitochondrion? Plos One. 7: e52340. PMID 23284996 DOI: 10.1371/journal.pone.0052340  1
2012 Hopkins JF, Spencer DF, Laboissiere S, Neilson JA, Eveleigh RJ, Durnford DG, Gray MW, Archibald JM. Proteomics reveals plastid- and periplastid-targeted proteins in the chlorarachniophyte alga Bigelowiella natans. Genome Biology and Evolution. 4: 1391-406. PMID 23221610 DOI: 10.1093/gbe/evs115  1
2012 Archibald JM. Treasurer's report for FY 2010. Molecular Biology and Evolution. 29: 3985. PMID 23071101 DOI: 10.1093/molbev/mss225  1
2012 Moore CE, Curtis B, Mills T, Tanifuji G, Archibald JM. Nucleomorph genome sequence of the cryptophyte alga Chroomonas mesostigmatica CCMP1168 reveals lineage-specific gene loss and genome complexity. Genome Biology and Evolution. 4: 1162-75. PMID 23042551 DOI: 10.1093/gbe/evs090  1
2012 Onodera NT, Ryu J, Durbic T, Nislow C, Archibald JM, Rohde JR. Genome sequence of Shigella flexneri serotype 5a strain M90T Sm. Journal of Bacteriology. 194: 3022. PMID 22582379 DOI: 10.1128/JB.00393-12  1
2012 Nakayama T, Archibald JM. Evolving a photosynthetic organelle. Bmc Biology. 10: 35. PMID 22531210 DOI: 10.1186/1741-7007-10-35  1
2012 Archibald JM. The Evolution of Algae by Secondary and Tertiary Endosymbiosis Advances in Botanical Research. 64: 87-118. DOI: 10.1016/B978-0-12-391499-6.00003-7  1
2011 McInerney JO, Martin WF, Koonin EV, Allen JF, Galperin MY, Lane N, Archibald JM, Embley TM. Planctomycetes and eukaryotes: a case of analogy not homology. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 810-7. PMID 21858844 DOI: 10.1002/bies.201100045  1
2011 Lukeš J, Archibald JM, Keeling PJ, Doolittle WF, Gray MW. How a neutral evolutionary ratchet can build cellular complexity. Iubmb Life. 63: 528-37. PMID 21698757 DOI: 10.1002/iub.489  1
2011 Tanifuji G, Kim E, Onodera NT, Gibeault R, Dlutek M, Cawthorn RJ, Fiala I, Lukes J, Greenwood SJ, Archibald JM. Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont. Eukaryotic Cell. 10: 1143-6. PMID 21666073 DOI: 10.1128/EC.05027-11  1
2011 Doolittle WF, Lukeš J, Archibald JM, Keeling PJ, Gray MW. Comment on "Does constructive neutral evolution play an important role in the origin of cellular complexity?" DOI 10.1002/bies.201100010. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 427-9. PMID 21538416 DOI: 10.1002/bies.201100039  1
2011 Maruyama S, Suzaki T, Weber AP, Archibald JM, Nozaki H. Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids. Bmc Evolutionary Biology. 11: 105. PMID 21501489 DOI: 10.1186/1471-2148-11-105  1
2011 Richards TA, Archibald JM. Cell evolution: gene transfer agents and the origin of mitochondria. Current Biology : Cb. 21: R112-4. PMID 21300273 DOI: 10.1016/j.cub.2010.12.036  1
2011 Kim E, Harrison JW, Sudek S, Jones MD, Wilcox HM, Richards TA, Worden AZ, Archibald JM. Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proceedings of the National Academy of Sciences of the United States of America. 108: 1496-500. PMID 21205890 DOI: 10.1073/pnas.1013337108  1
2011 Tanifuji G, Onodera NT, Wheeler TJ, Dlutek M, Donaher N, Archibald JM. Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set. Genome Biology and Evolution. 3: 44-54. PMID 21147880 DOI: 10.1093/gbe/evq082  1
2011 Archibald JM. Treasurer's Report for FY 2009 Genome Biology and Evolution. 3: 154. DOI: 10.1093/gbe/evq072  1
2011 Archibald JM. Origin of eukaryotic cells: 40 years on Symbiosis. 54: 69-86. DOI: 10.1007/s13199-011-0129-z  1
2010 Archibald JM, Richards TA. Gene transfer: anything goes in plant mitochondria. Bmc Biology. 8: 147. PMID 21176244 DOI: 10.1186/1741-7007-8-147  1
2010 Gray MW, Lukes J, Archibald JM, Keeling PJ, Doolittle WF. Cell biology. Irremediable complexity? Science (New York, N.Y.). 330: 920-1. PMID 21071654 DOI: 10.1126/science.1198594  1
2010 Curtis BA, Archibald JM. A spliceosomal intron of mitochondrial DNA origin. Current Biology : Cb. 20: R919-20. PMID 21056829 DOI: 10.1016/j.cub.2010.09.038  1
2010 Silver TD, Moore CE, Archibald JM. Nucleomorph ribosomal DNA and telomere dynamics in chlorarachniophyte algae. The Journal of Eukaryotic Microbiology. 57: 453-9. PMID 21040099 DOI: 10.1111/j.1550-7408.2010.00511.x  1
2010 Tanifuji G, Archibald JM. Actin gene family dynamics in cryptomonads and red algae. Journal of Molecular Evolution. 71: 169-79. PMID 20700735 DOI: 10.1007/s00239-010-9375-6  1
2010 Kim E, Archibald JM. Plastid evolution: gene transfer and the maintenance of 'stolen' organelles. Bmc Biology. 8: 73. PMID 20594287 DOI: 10.1186/1741-7007-8-73  1
2010 Kim E, Park JS, Simpson AG, Matsunaga S, Watanabe M, Murakami A, Sommerfeld K, Onodera NT, Archibald JM. Complex array of endobionts in Petalomonas sphagnophila, a large heterotrophic euglenid protist from Sphagnum-dominated peatlands. The Isme Journal. 4: 1108-20. PMID 20376101 DOI: 10.1038/ismej.2010.40  1
2009 Donaher N, Tanifuji G, Onodera NT, Malfatti SA, Chain PS, Hara Y, Archibald JM. The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate. Genome Biology and Evolution. 1: 439-48. PMID 20333213 DOI: 10.1093/gbe/evp047  1
2009 Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biology and Evolution. 1: 231-8. PMID 20333193 DOI: 10.1093/gbe/evp022  1
2009 Elias M, Archibald JM. Sizing up the genomic footprint of endosymbiosis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 1273-9. PMID 19921698 DOI: 10.1002/bies.200900117  1
2009 Moore CE, Archibald JM. Nucleomorph genomes. Annual Review of Genetics. 43: 251-64. PMID 19686079 DOI: 10.1146/annurev-genet-102108-134809  1
2009 Archibald JM, Lane CE. Going, going, not quite gone: nucleomorphs as a case study in nuclear genome reduction. The Journal of Heredity. 100: 582-90. PMID 19617523 DOI: 10.1093/jhered/esp055  1
2009 Elias M, Archibald JM. The RJL family of small GTPases is an ancient eukaryotic invention probably functionally associated with the flagellar apparatus. Gene. 442: 63-72. PMID 19393304 DOI: 10.1016/j.gene.2009.04.011  1
2009 Archibald JM. Genomics. Green evolution, green revolution. Science (New York, N.Y.). 324: 191-2. PMID 19359572 DOI: 10.1126/science.1172972  1
2009 Archibald JM. The puzzle of plastid evolution. Current Biology : Cb. 19: R81-8. PMID 19174147 DOI: 10.1016/j.cub.2008.11.067  1
2009 Ota S, Silver TD, Archibald JM, Ishida KI. Lotharella oceanica sp. nov. - A new planktonic chlorarachniophyte studied by light and electron microscopy Phycologia. 48: 315-323. DOI: 10.2216/09-02.1  1
2009 Archibald JM. The origin and spread of eukaryotic photosynthesis: Evolving views in light of genomics Botanica Marina. 52: 95-103. DOI: 10.1515/BOT.2008.060  1
2009 Lane CE, Archibald JM. Reply to Bodył, Stiller and Mackiewicz: "Chromalveolate plastids: direct descent or multiple endosymbioses?" Trends in Ecology and Evolution. 24: 121-122. DOI: 10.1016/j.tree.2008.11.002  1
2009 Kim E, Archibald JM. Diversity and evolution of plastids and their genomes Plant Cell Monographs. 13: 1-40. DOI: 10.1007/978-3-540-68696-5_1  1
2008 Lane CE, Archibald JM. NEW MARINE MEMBERS OF THE GENUS HEMISELMIS (CRYPTOMONADALES, CRYPTOPHYCEAE)(1). Journal of Phycology. 44: 439-50. PMID 27041199 DOI: 10.1111/j.1529-8817.2008.00486.x  0.4
2008 Phipps KD, Donaher NA, Lane CE, Archibald JM. NUCLEOMORPH KARYOTYPE DIVERSITY IN THE FRESHWATER CRYPTOPHYTE GENUS CRYPTOMONAS(1). Journal of Phycology. 44: 11-4. PMID 27041033 DOI: 10.1111/j.1529-8817.2007.00434.x  0.4
2008 Archibald JM. The eocyte hypothesis and the origin of eukaryotic cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 20049-50. PMID 19091952 DOI: 10.1073/pnas.0811118106  1
2008 Archibald JM. Plastid evolution: remnant algal genes in ciliates. Current Biology : Cb. 18: R663-R665. PMID 18682209 DOI: 10.1016/j.cub.2008.06.031  1
2008 Kim E, Lane CE, Curtis BA, Kozera C, Bowman S, Archibald JM. Complete sequence and analysis of the mitochondrial genome of Hemiselmis andersenii CCMP644 (Cryptophyceae). Bmc Genomics. 9: 215. PMID 18474103 DOI: 10.1186/1471-2164-9-215  1
2008 Keeling PJ, Archibald JM. Organelle evolution: what's in a name? Current Biology : Cb. 18: R345-7. PMID 18430636 DOI: 10.1016/j.cub.2008.02.065  1
2008 Khan H, Archibald JM. Lateral transfer of introns in the cryptophyte plastid genome. Nucleic Acids Research. 36: 3043-53. PMID 18397952 DOI: 10.1093/nar/gkn095  1
2008 Lane CE, Archibald JM. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends in Ecology & Evolution. 23: 268-75. PMID 18378040 DOI: 10.1016/j.tree.2008.02.004  1
2008 Cuvelier ML, Ortiz A, Kim E, Moehlig H, Richardson DE, Heidelberg JF, Archibald JM, Worden AZ. Widespread distribution of a unique marine protistan lineage. Environmental Microbiology. 10: 1621-34. PMID 18341584 DOI: 10.1111/j.1462-2920.2008.01580.x  1
2008 Fong A, Archibald JM. Evolutionary dynamics of light-independent protochlorophyllide oxidoreductase genes in the secondary plastids of cryptophyte algae. Eukaryotic Cell. 7: 550-3. PMID 18178774 DOI: 10.1128/EC.00396-07  1
2008 Lane CE, Archibald JM. New marine members of the genus Hemiselmis (Cryptomonadales, Cryptophyceae) Journal of Phycology. 44: 439-450. DOI: 10.1111/j.1529-8817.2008.00486.x  1
2008 Phipps KD, Donaher NA, Lane CE, Archibald JM. Nucleomorph karyotype diversity in the freshwater cryptophyte genus cryptomonas Journal of Phycology. 44: 11-14. DOI: 10.1111/j.1529-8817.2007.00434.x  1
2007 Lane CE, van den Heuvel K, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM. Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proceedings of the National Academy of Sciences of the United States of America. 104: 19908-13. PMID 18077423 DOI: 10.1073/pnas.0707419104  1
2007 Bhattacharya D, Archibald JM, Weber AP, Reyes-Prieto A. How do endosymbionts become organelles? Understanding early events in plastid evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 1239-46. PMID 18027391 DOI: 10.1002/bies.20671  1
2007 Silver TD, Koike S, Yabuki A, Kofuji R, Archibald JM, Ishida K. Phylogeny and nucleomorph karyotype diversity of chlorarachniophyte algae. The Journal of Eukaryotic Microbiology. 54: 403-10. PMID 17910684 DOI: 10.1111/j.1550-7408.2007.00279.x  1
2007 Adl SM, Leander BS, Simpson AG, Archibald JM, Anderson OR, Bass D, Bowser SS, Brugerolle G, Farmer MA, Karpov S, Kolisko M, Lane CE, Lodge DJ, Mann DG, Meisterfeld R, et al. Diversity, nomenclature, and taxonomy of protists. Systematic Biology. 56: 684-9. PMID 17661235 DOI: 10.1080/10635150701494127  1
2007 Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM. Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24: 1832-42. PMID 17522086 DOI: 10.1093/molbev/msm101  1
2007 Archibald JM. Nucleomorph genomes: structure, function, origin and evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 392-402. PMID 17373660 DOI: 10.1002/bies.20551  1
2007 Khan H, Kozera C, Curtis BA, Bussey JT, Theophilou S, Bowman S, Archibald JM. Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae. Journal of Molecular Evolution. 64: 223-36. PMID 17211547 DOI: 10.1007/s00239-006-0088-9  1
2006 Archibald JM. Algal genomics: exploring the imprint of endosymbiosis. Current Biology : Cb. 16: R1033-5. PMID 17174910 DOI: 10.1016/j.cub.2006.11.008  1
2006 Lane CE, Archibald JM. Novel nucleomorph genome architecture in the cryptomonad genus hemiselmis. The Journal of Eukaryotic Microbiology. 53: 515-21. PMID 17123416 DOI: 10.1111/j.1550-7408.2006.00135.x  1
2006 Ruiz-Trillo I, Lane CE, Archibald JM, Roger AJ. Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica. The Journal of Eukaryotic Microbiology. 53: 379-84. PMID 16968456 DOI: 10.1111/j.1550-7408.2006.00118.x  1
2006 Archibald JM. Endosymbiosis: double-take on plastid origins. Current Biology : Cb. 16: R690-2. PMID 16950094 DOI: 10.1016/j.cub.2006.08.006  1
2006 Archibald JM. Genome complexity in a lean, mean photosynthetic machine. Proceedings of the National Academy of Sciences of the United States of America. 103: 11433-4. PMID 16868076 DOI: 10.1073/pnas.0605255103  1
2006 Lane CE, Khan H, MacKinnon M, Fong A, Theophilou S, Archibald JM. Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Insight into the diversity and evolution of the cryptomonad nucleomorph genome. Molecular Biology and Evolution. 23: 856-65. PMID 16306383 DOI: 10.1093/molbev/msj066  1
2006 Bhattacharya D, Archibald JM. Response to Theissen and Martin Current Biology. 16: R1017-R1018. DOI: 10.1016/j.cub.2006.11.021  1
2005 Archibald JM. Jumping genes and shrinking genomes--probing the evolution of eukaryotic photosynthesis with genomics. Iubmb Life. 57: 539-47. PMID 16118111 DOI: 10.1080/15216540500167732  1
2005 Patron NJ, Waller RF, Archibald JM, Keeling PJ. Complex protein targeting to dinoflagellate plastids. Journal of Molecular Biology. 348: 1015-24. PMID 15843030 DOI: 10.1016/j.jmb.2005.03.030  1
2005 Kim JC, Ou YY, Badano JL, Esmail MA, Leitch CC, Fiedrich E, Beales PL, Archibald JM, Katsanis N, Rattner JB, Leroux MR. MKKS/BBS6, a divergent chaperonin-like protein linked to the obesity disorder Bardet-Biedl syndrome, is a novel centrosomal component required for cytokinesis. Journal of Cell Science. 118: 1007-20. PMID 15731008 DOI: 10.1242/jcs.01676  1
2004 Keeling PJ, Archibald JM, Fast NM, Palmer JD. Comment on "The evolution of modern eukaryotic phytoplankton". Science (New York, N.Y.). 306: 2191; author reply 2. PMID 15618503 DOI: 10.1126/science.1103879  1
2004 Rogers MB, Archibald JM, Field MA, Li C, Striepen B, Keeling PJ. Plastid-targeting peptides from the chlorarachniophyte Bigelowiella natans. The Journal of Eukaryotic Microbiology. 51: 529-35. PMID 15537087  1
2004 Archibald JM, Keeling PJ. Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens. The Journal of Eukaryotic Microbiology. 51: 113-8. PMID 15068273 DOI: 10.1111/j.1550-7408.2004.tb00172.x  1
2003 Longet D, Archibald JM, Keeling PJ, Pawlowski J. Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. International Journal of Systematic and Evolutionary Microbiology. 53: 1735-9. PMID 14657101 DOI: 10.1099/ijs.0.02597-0  1
2003 Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proceedings of the National Academy of Sciences of the United States of America. 100: 7678-83. PMID 12777624 DOI: 10.1073/pnas.1230951100  1
2003 Archibald JM, Teh EM, Keeling PJ. Novel ubiquitin fusion proteins: ribosomal protein P1 and actin. Journal of Molecular Biology. 328: 771-8. PMID 12729753 DOI: 10.1016/S0022-2836(03)00374-7  1
2003 Archibald JM, Keeling PJ. Comparative genomics. Plant genomes: cyanobacterial genes revealed. Heredity. 90: 2-3. PMID 12522415 DOI: 10.1038/sj.hdy.6800204  1
2003 Archibald JM, Longet D, Pawlowski J, Keeling PJ. A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Molecular Biology and Evolution. 20: 62-6. PMID 12519907 DOI: 10.1093/molbev/msg006  1
2002 Archibald JM, Keeling PJ. Recycled plastids: a 'green movement' in eukaryotic evolution. Trends in Genetics : Tig. 18: 577-84. PMID 12414188 DOI: 10.1016/S0168-9525(02)02777-4  1
2002 Archibald JM, Roger AJ. Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals. Journal of Molecular Evolution. 55: 232-45. PMID 12107599 DOI: 10.1007/s00239-002-2321-5  1
2002 Archibald JM, O'Kelly CJ, Doolittle WF. The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution. Molecular Biology and Evolution. 19: 422-31. PMID 11919283  1
2002 Archibald JM, Roger AJ. Gene duplication and gene conversion shape the evolution of archaeal chaperonins. Journal of Molecular Biology. 316: 1041-50. PMID 11884142 DOI: 10.1006/jmbi.2002.5409  1
2001 Archibald JM, Blouin C, Doolittle WF. Gene duplication and the evolution of group II chaperonins: implications for structure and function. Journal of Structural Biology. 135: 157-69. PMID 11580265 DOI: 10.1006/jsbi.2001.4353  1
2001 Archibald JM, Cavalier-Smith T, Maier U, Douglas S. Molecular chaperones encoded by a reduced nucleus: the cryptomonad nucleomorph. Journal of Molecular Evolution. 52: 490-501. PMID 11443352 DOI: 10.1007/s002390010179  1
2000 Archibald JM, Logsdon JM, Doolittle WF. Origin and evolution of eukaryotic chaperonins: phylogenetic evidence for ancient duplications in CCT genes. Molecular Biology and Evolution. 17: 1456-66. PMID 11018153  1
1999 Archibald JM, Logsdon JM, Doolittle WF. Recurrent paralogy in the evolution of archaeal chaperonins. Current Biology : Cb. 9: 1053-6. PMID 10508614 DOI: 10.1016/S0960-9822(99)80457-6  1
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