Johan A. Grahnen, Ph.D. - Publications

Molecular Biology University of Wyoming, Laramie, WY, United States 
molecular evolution, comparative genomics, bioinformatics

9/11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, et al. The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85. PMID 22528593 DOI: 10.1002/Pro.2071  1
2012 Grahnen JA, Liberles DA. CASS: Protein sequence simulation with explicit genotype-phenotype mapping Trends in Evolutionary Biology. 4: 47-49. DOI: 10.4081/Eb.2012.E9  1
2011 Siltberg-Liberles J, Grahnen JA, Liberles DA. The evolution of protein structures and structural ensembles under functional constraint. Genes. 2: 748-62. PMID 24710290 DOI: 10.3390/Genes2040748  1
2011 Grahnen JA, Nandakumar P, Kubelka J, Liberles DA. Biophysical and structural considerations for protein sequence evolution. Bmc Evolutionary Biology. 11: 361. PMID 22171550 DOI: 10.1186/1471-2148-11-361  1
2011 Konrad A, Teufel AI, Grahnen JA, Liberles DA. Toward a general model for the evolutionary dynamics of gene duplicates. Genome Biology and Evolution. 3: 1197-209. PMID 21920903 DOI: 10.1093/Gbe/Evr093  1
2011 Grahnen JA, Kubelka J, Liberles DA. Fast side chain replacement in proteins using a coarse-grained approach for evaluating the effects of mutation during evolution. Journal of Molecular Evolution. 73: 23-33. PMID 21800121 DOI: 10.1007/S00239-011-9454-3  1
2011 Liberles DA, Tisdell MD, Grahnen JA. Binding constraints on the evolution of enzymes and signalling proteins: the important role of negative pleiotropy. Proceedings. Biological Sciences / the Royal Society. 278: 1930-5. PMID 21490020 DOI: 10.1098/Rspb.2010.2637  1
2010 Grahnen JA, Amunson KE, Kubelka J. DFT-based simulations of IR amide I' spectra for a small protein in solution. Comparison of explicit and empirical solvent models. The Journal of Physical Chemistry. B. 114: 13011-20. PMID 20857992 DOI: 10.1021/Jp106639S  1
2010 Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. Bmc Genomics. 11: 180. PMID 20233449 DOI: 10.1186/1471-2164-11-180  1
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2018 Protter AA, Phan V, Mizuno T, Kim K, Louie B, Elmer S, Herman D, Grahnen J, Lum P. Novel small molecules induced ROS accumulation and antitumor activity based on an oxidative stress gene signature. Journal of Clinical Oncology. 36: e14575-e14575. DOI: 10.1200/Jco.2018.36.15_Suppl.E14575  0.01
2011 Grahnen J, Kubelka J. DFT-Based Simulations of Ir Amide I’ Spectra for a Small Protein in Solution Biophysical Journal. 100: 314a. DOI: 10.1016/J.Bpj.2010.12.1916  0.01
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