Anke Konrad, Ph.D. - Related publications

Molecular Biology University of Wyoming, Laramie, WY, United States 
molecular evolution, comparative genomics, bioinformatics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Acs-Szabo L, Papp LA, Sipiczki M, Miklos I. Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34682285 DOI: 10.3390/jof7100864   
2021 Morgenthaler AB, Fritts RK, Copley SD. Amplicon remodeling and genomic mutations drive population dynamics after segmental amplification. Molecular Biology and Evolution. PMID 34581806 DOI: 10.1093/molbev/msab289   
2021 Li X, Li Y, Sylvester SP, Zang M, El-Kassaby YA, Fang Y. Evolutionary patterns of nucleotide substitution rates in plastid genomes of . Ecology and Evolution. 11: 13401-13414. PMID 34646478 DOI: 10.1002/ece3.8063   
2021 Young Chae G, Hong WJ, Jeong Jang M, Jung KH, Kim S. Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. Nucleic Acids Research. PMID 34725701 DOI: 10.1093/nar/gkab932   
2021 Lee S, Choi CH, Yun MR, Kim DW, Kim SS, Choi YK, Choi YS. Evaluation of global evolutionary variations in the early stage of SARS-CoV-2 pandemic. Heliyon. e08170. PMID 34660919 DOI: 10.1016/j.heliyon.2021.e08170   
2021 Fuchs S, Garrood WT, Beber A, Hammond A, Galizi R, Gribble M, Morselli G, Hui TJ, Willis K, Kranjc N, Burt A, Crisanti A, Nolan T. Resistance to a CRISPR-based gene drive at an evolutionarily conserved site is revealed by mimicking genotype fixation. Plos Genetics. 17: e1009740. PMID 34610011 DOI: 10.1371/journal.pgen.1009740   
2021 Xie D, Chen G, Meng X, Wang H, Bi X, Fang M, Yang C, Zhou Y, Long E, Feng S. Comparable Number of Genes Having Experienced Positive Selection among Great Ape Species. Animals : An Open Access Journal From Mdpi. 11. PMID 34827995 DOI: 10.3390/ani11113264   
2021 Li G, Guo W, Zhang Y, Cao G, Wang Z. Complete mitochondrial genome of (Artiodactyla: Cervidae). Mitochondrial Dna. Part B, Resources. 6: 3372-3374. PMID 34778556 DOI: 10.1080/23802359.2021.1997118   
2021 Zekri AN, Bahnasy AA, Hafez MM, Hassan ZK, Ahmed OS, Soliman HK, El-Sisi ER, Dine MHSE, Solimane MS, Latife LSA, Seadawy MG, Elsafty AS, Abouelhoda M. Characterization of the SARS-CoV-2 genomes in Egypt in first and second waves of infection. Scientific Reports. 11: 21632. PMID 34732835 DOI: 10.1038/s41598-021-99014-4   
2021 Gompert Z, Feder JL, Nosil P. Natural selection drives genome-wide evolution via chance genetic associations. Molecular Ecology. PMID 34704650 DOI: 10.1111/mec.16247   
2021 Ho EKH, Bellis ES, Calkins J, Adrion JR, Latta Iv LC, Schaack S. Engines of change: Transposable element mutation rates are high and variable within Daphnia magna. Plos Genetics. 17: e1009827. PMID 34723969 DOI: 10.1371/journal.pgen.1009827   
2021 Hu Q, Ma Y, Mandáková T, Shi S, Chen C, Sun P, Zhang L, Feng L, Zheng Y, Feng X, Yang W, Jiang J, Li T, Zhou P, Yu Q, et al. Genome evolution of the psammophyte for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34649989 DOI: 10.1073/pnas.2025711118   
2021 Stein WD, Hoshen MB. During evolution from the earliest tetrapoda, newly-recruited genes are increasingly paralogues of existing genes and distribute non-randomly among the chromosomes. Bmc Genomics. 22: 794. PMID 34736418 DOI: 10.1186/s12864-021-08066-3   
2021 Datta MS, Yelin I, Hochwald O, Kassis I, Borenstein-Levin L, Kugelman A, Kishony R. Rapid methicillin resistance diversification in Staphylococcus epidermidis colonizing human neonates. Nature Communications. 12: 6062. PMID 34663826 DOI: 10.1038/s41467-021-26392-8   
2021 Zhuang X, Cheng CC. Propagation of a De Novo Gene under Natural Selection: Antifreeze Glycoprotein Genes and Their Evolutionary History in Codfishes. Genes. 12. PMID 34828383 DOI: 10.3390/genes12111777   
2021 Kim KA, Park YJ, Cheon KS. The complete chloroplast genome sequence of Kitam. (Campanulaceae), an endemic to Korea. Mitochondrial Dna. Part B, Resources. 6: 3475-3476. PMID 34869881 DOI: 10.1080/23802359.2021.2002212   
2021 Uddin MB, Sajib EH, Hoque SF, Bappy MNI, Elahi F, Ghosh A, Muhit S, Hassan MM, Hasan M, Chelliah R, Park SJ, Mony TJ, Oh DH, Ahmed SSU. Genomic diversity and molecular dynamics interaction on mutational variances among RB domains of SARS-CoV-2 interplay drug inactivation. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 105128. PMID 34752930 DOI: 10.1016/j.meegid.2021.105128   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Singh PR, van de Vossenberg B, Rybarczyk-Mydłowska K, Kowalewska-Groszkowska M, Bert W, Karssen G. An integrated approach for synonymization of with (Nematoda: Hoplolaimidae) reveals high intraspecific mitogenomic variation. Phytopathology. PMID 34818905 DOI: 10.1094/PHYTO-08-21-0363-R   
2021 Nie Y, Zhao H, Wang Z, Zhou Z, Liu X, Huang B. The Gene Rearrangement, Loss, Transfer, and Deep Intronic Variation in Mitochondrial Genomes of . Frontiers in Microbiology. 12: 765733. PMID 34858376 DOI: 10.3389/fmicb.2021.765733   
2021 Zhou J, Wu P, Xiong Z, Liu N, Zhao N, Ji M, Qiu Y, Yang B. Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of . Frontiers in Genetics. 12: 728418. PMID 34777464 DOI: 10.3389/fgene.2021.728418   
2021 Evans BJ, Peter BM, Melnick DJ, Andayani N, Supriatna J, Zhu J, Tosi AJ. Mitonuclear interactions and introgression genomics of macaque monkeys () highlight the influence of behaviour on genome evolution. Proceedings. Biological Sciences. 288: 20211756. PMID 34610767 DOI: 10.1098/rspb.2021.1756   
2021 Janko K, Bartoš O, Kočí J, Roslein J, Drdová EJ, Kotusz J, Eisner J, Mokrejš M, Štefková-Kašparová E. Genome fractionation and loss of heterozygosity in hybrids and polyploids: mechanisms, consequences for selection, and link to gene function. Molecular Biology and Evolution. PMID 34410426 DOI: 10.1093/molbev/msab249   
2021 Jiang T, Yin Z, Cai R, Yu H, Lu Q, Zhao S, Tian Y, Yan Y, Chen X, Guo J. Chromosomal-level Genome Assembly of a True Bug, Aspongopus chinensis Dallas, 1851 (Hemiptera: Dinidoridae). Genome Biology and Evolution. PMID 34623414 DOI: 10.1093/gbe/evab232   
2021 Dan L, Li Y, Chen S, Liu J, Wang Y, Li F, He X, Carey LB. A rapidly reversible mutation generates subclonal genetic diversity and unstable drug resistance. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34675074 DOI: 10.1073/pnas.2019060118   
2021 Senderowicz M, Nowak T, Rojek-Jelonek M, Bisaga M, Papp L, Weiss-Schneeweiss H, Kolano B. Descending Dysploidy and Bidirectional Changes in Genome Size Accompanied (Asteraceae) Evolution. Genes. 12. PMID 34573417 DOI: 10.3390/genes12091436   
2021 Yu Z, Zhang W, Fu H, Zou X, Zhao M, Liang S, Gu C, Yang Q, He M, Xiao Q, Xiao W, He L, Lü M. Genomic analysis of Poxviridae and exploring qualified gene sequences for phylogenetics. Computational and Structural Biotechnology Journal. 19: 5479-5486. PMID 34712393 DOI: 10.1016/j.csbj.2021.09.031   
2021 Tian R, Yang C, Geng Y, Seim I, Yang G. Genomewide analysis of sperm whale E2 ubiquitin conjugating enzyme genes. Journal of Genetics. 100. PMID 34787113   
2021 Chiurazzi MJ, Nørrevang AF, García P, Cerdán PD, Palmgren MB, Wenkel S. Controlling flowering of Medicago sativa (alfalfa) by inducing dominant mutations. Journal of Integrative Plant Biology. PMID 34761872 DOI: 10.1111/jipb.13186   
2021 Yu H, Liu Y, Liu Y, Yang J, Li S, Bi J, Zhang R. Complete mitochondrial genome of (Reptilia, Squamata, Sphaerodactylidae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 3166-3168. PMID 34660892 DOI: 10.1080/23802359.2021.1987162   
2021 Shekhovtsov SV, Efremov YR, Poluboyarova TV, Peltek SE. Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida). Vavilovskii Zhurnal Genetiki I Selektsii. 25: 647-651. PMID 34782884 DOI: 10.18699/VJ21.073   
2021 Zhou S, Wu Y, Xie ZX, Jia B, Yuan YJ. Directed genome evolution driven by structural rearrangement techniques. Chemical Society Reviews. PMID 34651628 DOI: 10.1039/d1cs00722j   
2021 Liu Y, Hu Z, Deng Y, Shang L, Gobler CJ, Tang YZ. Dependence of genome size and copy number of rRNA gene on cell volume in dinoflagellates. Harmful Algae. 109: 102108. PMID 34815026 DOI: 10.1016/j.hal.2021.102108   
2021 Gundappa MK, To TH, Grønvold L, Martin SAM, Lien S, Geist J, Hazlerigg D, Sandve SR, Macqueen DJ. Genome-wide reconstruction of rediploidization following autopolyploidization across one hundred million years of salmonid evolution. Molecular Biology and Evolution. PMID 34718723 DOI: 10.1093/molbev/msab310   
2021 Pema Y, Ma C, Bautista MAC, Chen T. The complete chloroplast genome sequence of the Tibetan herb (Benth. ex Hook.f.) Mathiesen (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 3261-3262. PMID 34693018 DOI: 10.1080/23802359.2021.1993459   
2021 Watson AK, Lopez P, Bapteste E. Hundreds of out-of-frame remodelled gene families in the E. coli pangenome. Molecular Biology and Evolution. PMID 34792602 DOI: 10.1093/molbev/msab329   
2021 Awan F, Ali MM, Hamid M, Awan MH, Mushtaq MH, Kalsoom S, Ijaz M, Mehmood K, Liu Y. Epi-Gene: An R-Package for Easy Pan-Genome Analysis. Biomed Research International. 2021: 5585586. PMID 34595238 DOI: 10.1155/2021/5585586   
2021 Sinding MS, Ciucani MM, Ramos-Madrigal J, Carmagnini A, Rasmussen JA, Feng S, Chen G, Vieira FG, Mattiangeli V, Ganjoo RK, Larson G, Sicheritz-Pontén T, Petersen B, Frantz L, Gilbert MTP, et al. Kouprey () genomes unveil polytomic origin of wild Asian . Iscience. 24: 103226. PMID 34712923 DOI: 10.1016/j.isci.2021.103226   
2021 Li Y, Sun J, Ci X, Li J, Wang D, Xu Y, Cai N. The complete chloroplast genome of . Mitochondrial Dna. Part B, Resources. 6: 3140-3141. PMID 34746384 DOI: 10.1080/23802359.2020.1806131   
2021 Wang X, Li LL, Xiao Y, Chen XY, Chen JH, Hu XS. A complete sequence of mitochondrial genome of Neolamarckia cadamba and its use for systematic analysis. Scientific Reports. 11: 21452. PMID 34728739 DOI: 10.1038/s41598-021-01040-9   
2021 Pyasi S, Gupta A, Hegde NR, Nayak D. Complete genome sequencing and assessment of mutation-associated protein dynamics of the first Indian bovine ephemeral fever virus (BEFV) isolate. The Veterinary Quarterly. 1-16. PMID 34663182 DOI: 10.1080/01652176.2021.1995909   
2021 Sun TW, Ku C. Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. Virus Evolution. 7: veab081. PMID 34754514 DOI: 10.1093/ve/veab081   
2021 Li Y, Wang R, Wang H, Pu F, Feng X, Jin L, Ma Z, Ma XX. Codon Usage Bias in Autophagy-Related Gene 13 in Eukaryotes: Uncovering the Genetic Divergence by the Interplay Between Nucleotides and Codon Usages. Frontiers in Cellular and Infection Microbiology. 11: 771010. PMID 34804999 DOI: 10.3389/fcimb.2021.771010   
2021 Zheng S, Song H, Dong N. The complete chloroplast genome of Schneid. (Rosaceae). Mitochondrial Dna. Part B, Resources. 6: 3322-3324. PMID 34746401 DOI: 10.1080/23802359.2021.1994896   
2021 Sun Y, Guo J, Zeng X, Chen R, Feng Y, Chen S, Yang K. Chromosome-scale genome assembly of Castanopsis tibetana provides a powerful comparative framework to study the evolution and adaptation of Fagaceae trees. Molecular Ecology Resources. PMID 34689424 DOI: 10.1111/1755-0998.13539   
2021 Yi S, Xu T, Song X, Wang W, Wang G, Yu W, Han B. The complete chloroplast genome of Engler and its phylogenetic analysis in the family Araceae. Mitochondrial Dna. Part B, Resources. 6: 3283-3285. PMID 34712813 DOI: 10.1080/23802359.2021.1993107   
2021 Feng C, Zou S, Gao P, Wang Z. identification, characterization expression profile of WUSCHEL-Related Homeobox (WOX) gene family in two species of kiwifruit. Peerj. 9: e12348. PMID 34760371 DOI: 10.7717/peerj.12348   
2021 Wu B, Chen X, Yu M, Ren J, Hu J, Shao C, Zhou L, Sun X, Yu T, Zheng Y, Wang Y, Wang Z, Zhang H, Fan G, Liu Z. Chromosome-level genome and population genomic analysis provide insights into the evolution and environmental adaptation of Jinjiang oyster Crassostrea ariakensis. Molecular Ecology Resources. PMID 34800349 DOI: 10.1111/1755-0998.13556   
2021 Tian Z, Du Y, Yang F, Zhao J, Liu S, Zhang D, Long CA. Chromosome Genome Sequencing and Comparative Transcriptome-Based Analyses of 34-9 Unveil the Potential Biocontrol Mechanisms Against Citrus Green Mold. Frontiers in Microbiology. 12: 752529. PMID 34858366 DOI: 10.3389/fmicb.2021.752529   
2021 Ma B, Wang X, Lei C, Tang Y, He J, Gao Y, Zhang Y, Wang H. Identification of Three Novel PmGRI1 Genomic Resistance Islands and One Multidrug Resistant Hybrid Structure of Tn-like Transposon and PmGRI1 in . Antibiotics (Basel, Switzerland). 10. PMID 34680847 DOI: 10.3390/antibiotics10101268