Timothy Y. James, Ph.D. - Publications

Duke University, Durham, NC 
Fungal evolution and phylogenetics

165 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Clemons RA, Yacoub MN, Faust E, Toledo LF, Jenkinson TS, Carvalho T, Simmons DR, Kalinka E, Fritz-Laylin LK, James TY, Stajich JE. An endogenous DNA virus in an amphibian-killing fungus associated with pathogen genotype and virulence. Current Biology : Cb. PMID 38490202 DOI: 10.1016/j.cub.2024.02.062  0.761
2024 Carvalho T, Belasen AM, Toledo LF, James TY. Coevolution of a generalist pathogen with many hosts: the case of the amphibian chytrid Batrachochytrium dendrobatidis. Current Opinion in Microbiology. 78: 102435. PMID 38387210 DOI: 10.1016/j.mib.2024.102435  0.325
2023 Gryganskyi AP, Golan J, Muszewska A, Idnurm A, Dolatabadi S, Mondo SJ, Kutovenko VB, Kutovenko VO, Gajdeczka MT, Anishchenko IM, Pawlowska J, Tran NV, Ebersberger I, Voigt K, Wang Y, ... ... James TY, et al. Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? Microorganisms. 11. PMID 37513002 DOI: 10.3390/microorganisms11071830  0.722
2023 Seto K, Simmons DR, Quandt CA, Frenken T, Dirks AC, Clemons RA, McKindles KM, McKay RML, James TY. A combined microscopy and single-cell sequencing approach reveals the ecology, morphology, and phylogeny of uncultured lineages of zoosporic fungi. Mbio. e0131323. PMID 37486265 DOI: 10.1128/mbio.01313-23  0.361
2023 Anderson FM, Visser ND, Amses KR, Hodgins-Davis A, Weber AM, Metzner KM, McFadden MJ, Mills RE, O'Meara MJ, James TY, O'Meara TR. Candida albicans selection for human commensalism results in substantial within-host diversity without decreasing fitness for invasive disease. Plos Biology. 21: e3001822. PMID 37205709 DOI: 10.1371/journal.pbio.3001822  0.806
2022 Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC, Glass NL, Gow NAR, Gurr SJ, Hittinger CT, Hohl TM, ... ... James TY, et al. The future of fungi: threats and opportunities. G3 (Bethesda, Md.). PMID 36179219 DOI: 10.1093/g3journal/jkac224  0.423
2022 Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, ... ... James TY, et al. Diploid-dominant life cycles characterize the early evolution of Fungi. Proceedings of the National Academy of Sciences of the United States of America. 119: e2116841119. PMID 36037379 DOI: 10.1073/pnas.2116841119  0.818
2022 Alors D, Amses KR, James TY, Boussiba S, Zarka A. GlnS III Is Essential for the Infection of Its Host . Journal of Fungi (Basel, Switzerland). 8. PMID 35736044 DOI: 10.3390/jof8060561  0.796
2022 Peris D, Lu DS, Kinneberg VB, Methlie IS, Dahl MS, James TY, Kauserud H, Skrede I. Large-scale fungal strain sequencing unravels the molecular diversity in mating loci maintained by long-term balancing selection. Plos Genetics. 18: e1010097. PMID 35358178 DOI: 10.1371/journal.pgen.1010097  0.315
2022 Myers JM, James TY. Mycoviruses. Current Biology : Cb. 32: R150-R155. PMID 35231405 DOI: 10.1016/j.cub.2022.01.049  0.805
2022 Belasen AM, Amses KR, Clemons RA, Becker CG, Toledo LF, James TY. Habitat fragmentation in the Brazilian Atlantic Forest is associated with erosion of frog immunogenetic diversity and increased fungal infections. Immunogenetics. PMID 35080658 DOI: 10.1007/s00251-022-01252-x  0.787
2021 Michelotti LA, Sun S, Heitman J, James TY. Clonal evolution in serially passaged Cryptococcus neoformans x deneoformans hybrids reveals a heterogenous landscape of genomic change. Genetics. PMID 34849836 DOI: 10.1093/genetics/iyab142  0.547
2021 Voigt K, James TY, Kirk PM, Santiago ALCMA, Waldman B, Griffith GW, Fu M, Radek R, Strassert JFH, Wurzbacher C, Jerônimo GH, Simmons DR, Seto K, Gentekaki E, Hurdeal VG, et al. Early-diverging fungal phyla: taxonomy, species concept, ecology, distribution, anthropogenic impact, and novel phylogenetic proposals. Fungal Diversity. 1-40. PMID 34608378 DOI: 10.1007/s13225-021-00480-y  0.304
2021 El Baidouri F, Zalar P, James TY, Gladfelter AS, Amend A. Evolution and Physiology of Amphibious Yeasts. Annual Review of Microbiology. PMID 34351793 DOI: 10.1146/annurev-micro-051421-121352  0.308
2021 Belasen AM, Riolo MA, Bletz MC, Lyra ML, Toledo LF, James TY. Geography, Host Genetics, and Cross-Domain Microbial Networks Structure the Skin Microbiota of Fragmented Brazilian Atlantic Forest Frog Populations. Ecology and Evolution. 11: 9293-9307. PMID 34306622 DOI: 10.1002/ece3.7594  0.808
2021 Simmons DR, Longcore JE, James TY. , the first known rhizomycelial genus and species in the Rhizophydiales, is closely related to . Mycologia. 1-7. PMID 33847227 DOI: 10.1080/00275514.2021.1885206  0.302
2021 Li Y, Steenwyk JL, Chang Y, Wang Y, James TY, Stajich JE, Spatafora JW, Groenewald M, Dunn CW, Hittinger CT, Shen XX, Rokas A. A genome-scale phylogeny of the kingdom Fungi. Current Biology : Cb. PMID 33607033 DOI: 10.1016/j.cub.2021.01.074  0.328
2020 Ruthsatz K, Lyra ML, Lambertini C, Belasen AM, Jenkinson TS, da Silva Leite D, Becker CG, Haddad CFB, James TY, Zamudio KR, Toledo LF, Vences M. Skin microbiome correlates with bioclimate and Batrachochytrium dendrobatidis infection intensity in Brazil's Atlantic Forest treefrogs. Scientific Reports. 10: 22311. PMID 33339839 DOI: 10.1038/s41598-020-79130-3  0.788
2020 Simmons DR, Bonds AE, Castillo BT, Clemons RA, Glasco AD, Myers JM, Thapa N, Letcher PM, Powell MJ, Longcore JE, James TY. The Collection of Zoosporic Eufungi at the University of Michigan (CZEUM): introducing a new repository of barcoded and cultures. Ima Fungus. 11: 20. PMID 33062585 DOI: 10.1186/s43008-020-00041-z  0.76
2020 Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, ... ... James TY, et al. Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses. Mbio. 11. PMID 32900807 DOI: 10.1128/Mbio.02027-20  0.739
2020 James TY, Stajich JE, Hittinger CT, Rokas A. Toward a Fully Resolved Fungal Tree of Life. Annual Review of Microbiology. PMID 32660385 DOI: 10.1146/Annurev-Micro-022020-051835  0.607
2020 Burrowes PA, James TY, Jenkinson TS, De la Riva I. Genetic analysis of post-epizootic amphibian chytrid strains in Bolivia: Adding a piece to the puzzle. Transboundary and Emerging Diseases. PMID 32277592 DOI: 10.1111/Tbed.13568  0.82
2020 Longcore JE, Qin S, Simmons DR, James TY. is a new species of parasitic chytrid of the commercially grown alga, . Mycologia. 1-10. PMID 32271133 DOI: 10.1080/00275514.2020.1730136  0.626
2020 Samarasinghe H, You M, Jenkinson TS, Xu J, James TY. Hybridization Facilitates Adaptive Evolution in Two Major Fungal Pathogens. Genes. 11. PMID 31963231 DOI: 10.3390/Genes11010101  0.817
2020 McDonald CA, Ellison AR, Toledo LF, James TY, Zamudio KR. Gene expression varies within and between enzootic and epizootic lineages of Batrachochytrium dendrobatidis (Bd) in the Americas. Fungal Biology. 124: 34-43. PMID 31892375 DOI: 10.1016/J.Funbio.2019.10.008  0.717
2020 Zimkus BM, Baláž V, Belasen AM, Bell RC, Channing A, Doumbia J, Fokam EB, Gonwouo LN, Greenbaum E, Gvoždík V, Hirschfeld M, Jackson K, James TY, Kusamba C, Larson JG, et al. Chytrid Pathogen (Batrachochytrium dendrobatidis) in African Amphibians: A Continental Analysis of Occurrences and Modeling of Its Potential Distribution Herpetologica. 76: 201. DOI: 10.1655/0018-0831-76.2.201  0.583
2019 Boyce GR, Gluck-Thaler E, Slot JC, Stajich JE, Davis WJ, James TY, Cooley JR, Panaccione DG, Eilenberg J, De Fine Licht HH, Macias AM, Berger MC, Wickert KL, Stauder CM, Spahr EJ, et al. Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens. Fungal Ecology. 41: 147-164. PMID 31768192 DOI: 10.1016/J.Funeco.2019.06.002  0.612
2019 Amses KR, Davis WJ, James TY. SCGid, a consensus approach to contig filtering and genome prediction from single cell sequencing libraries of uncultured eukaryotes. Bioinformatics (Oxford, England). PMID 31764940 DOI: 10.1093/Bioinformatics/Btz866  0.788
2019 Russell ID, Larson JG, von May R, Holmes IA, James TY, Davis Rabosky AR. Widespread chytrid infection across frogs in the Peruvian Amazon suggests critical role for low elevation in pathogen spread and persistence. Plos One. 14: e0222718. PMID 31618214 DOI: 10.1371/Journal.Pone.0222718  0.604
2019 Ribeiro LP, Carvalho T, Becker CG, Jenkinson TS, Leite DDS, James TY, Greenspan SE, Toledo LF. Bullfrog farms release virulent zoospores of the frog-killing fungus into the natural environment. Scientific Reports. 9: 13422. PMID 31530868 DOI: 10.1038/S41598-019-49674-0  0.817
2019 James TY, Michelotti LA, Glasco AD, Clemons RA, Powers RA, James ES, Simmons DR, Bai F, Ge S. Adaptation by Loss of Heterozygosity in Clones Under Divergent Selection. Genetics. PMID 31371407 DOI: 10.1534/Genetics.119.302411  0.569
2019 Wang M, Danesi P, James TY, Al-Hatmi AMS, Najafzadeh MJ, Dolatabadi S, Ming C, Liou GY, Kang Y, de Hoog S. Comparative pathogenicity of opportunistic black yeasts in Aureobasidium. Mycoses. PMID 31107996 DOI: 10.1111/Myc.12931  0.564
2019 Jerônimo GH, Jesus AL, Simmons DR, James TY, Pires-Zottarelli CLA. Novel taxa in Cladochytriales (Chytridiomycota): Karlingiella (gen. nov.) and Nowakowskiella crenulata (sp. nov.). Mycologia. 1-11. PMID 31012810 DOI: 10.1080/00275514.2019.1588583  0.567
2019 Gladfelter AS, James TY, Amend AS. Marine fungi. Current Biology : Cb. 29: R191-R195. PMID 30889385 DOI: 10.1016/j.cub.2019.02.009  0.516
2019 Davis WJ, Amses KR, James ES, James TY. A new 18S rRNA phylogeny of uncultured predacious fungi (Zoopagales). Mycologia. 1-8. PMID 30856068 DOI: 10.1080/00275514.2018.1546066  0.815
2019 Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ. Diversity of cytosine methylation across the fungal tree of life. Nature Ecology & Evolution. PMID 30778188 DOI: 10.1038/S41559-019-0810-9  0.619
2019 Muletz-Wolz CR, Barnett SE, DiRenzo GV, Zamudio KR, Toledo LF, James TY, Lips KR. Diverse genotypes of the amphibian killing fungus produce distinct phenotypes through plastic responses to temperature. Journal of Evolutionary Biology. PMID 30650220 DOI: 10.1111/Jeb.13413  0.696
2019 Davis WJ, Amses KR, Benny GL, Carter-House D, Chang Y, Grigoriev I, Smith ME, Spatafora JW, Stajich JE, James TY. Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). Molecular Phylogenetics and Evolution. PMID 30639767 DOI: 10.1016/J.Ympev.2019.01.006  0.801
2019 Zak DR, Pellitier PT, Argiroff WA, Castillo B, James TY, Nave LE, Averill C, Beidler K, Bhatnagar J, Blesh J, Classen AT, Craig M, Fernandez CW, Gundersen P, Johansen R, et al. Exploring the role of ectomycorrhizal fungi in soil carbon dynamics. The New Phytologist. PMID 30636276 DOI: 10.1111/Nph.15679  0.764
2019 Belasen AM, Bletz MC, Leite DdS, Toledo LF, James TY. Long-Term Habitat Fragmentation Is Associated With Reduced MHC IIB Diversity and Increased Infections in Amphibian Hosts Frontiers in Ecology and Evolution. 6. DOI: 10.3389/Fevo.2018.00236  0.621
2019 Jerônimo GH, Simmons DR, James TY, Pires-Zottarelli CLA. Boothiomyces angulosus and Boothiomyces elyensis: two new combinations in the Terramycetaceae (Rhizophydiales, Chytridiomycota) Nova Hedwigia. 109: 399-412. DOI: 10.1127/Nova_Hedwigia/2019/0536  0.567
2018 Jenkinson TS, Rodriguez D, Clemons RA, Michelotti LA, Zamudio KR, Toledo LF, Longcore JE, James TY. Globally invasive genotypes of the amphibian chytrid outcompete an enzootic lineage in coinfections. Proceedings. Biological Sciences. 285: 20181894. PMID 30963903 DOI: 10.1098/Rspb.2018.1894  0.808
2018 Hibbett DS, Blackwell M, James TY, Spatafora JW, Taylor JW, Vilgalys R. Phylogenetic taxon definitions for and . Ima Fungus. 9: 291-298. PMID 30622884 DOI: 10.5598/imafungus.2018.09.02.05  0.76
2018 Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Arnold AE, Lewis LA, Swofford DL, Hibbett D, Hilu K, James TY, Quandt D, Magallón S. Contemporaneous radiations of fungi and plants linked to symbiosis. Nature Communications. 9: 5451. PMID 30575731 DOI: 10.1038/S41467-018-07849-9  0.756
2018 Andrew C, Diez J, James TY, Kauserud H. Fungarium specimens: a largely untapped source in global change biology and beyond. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374. PMID 30455210 DOI: 10.1098/Rstb.2017.0392  0.566
2018 Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV. Leveraging single-cell genomics to expand the fungal tree of life. Nature Microbiology. PMID 30297742 DOI: 10.1038/S41564-018-0261-0  0.627
2018 Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, ... James TY, et al. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. The Journal of Eukaryotic Microbiology. PMID 30257078 DOI: 10.1111/Jeu.12691  0.593
2018 Greenspan SE, Lambertini C, Carvalho T, James TY, Toledo LF, Haddad CFB, Becker CG. Hybrids of amphibian chytrid show high virulence in native hosts. Scientific Reports. 8: 9600. PMID 29941894 DOI: 10.1038/S41598-018-27828-W  0.601
2018 Fisher MC, Ghosh P, Shelton JMG, Bates K, Brookes L, Wierzbicki C, Rosa GM, Farrer RA, Aanensen DM, Alvarado-Rybak M, Bataille A, Berger L, Böll S, Bosch J, Clare FC, ... James TY, et al. Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi. Scientific Reports. 8: 7772. PMID 29773857 DOI: 10.1038/S41598-018-24472-2  0.809
2018 O'Hanlon SJ, Rieux A, Farrer RA, Rosa GM, Waldman B, Bataille A, Kosch TA, Murray KA, Brankovics B, Fumagalli M, Martin MD, Wales N, Alvarado-Rybak M, Bates KA, Berger L, ... James TY, et al. Recent Asian origin of chytrid fungi causing global amphibian declines. Science (New York, N.Y.). 360: 621-627. PMID 29748278 DOI: 10.1126/Science.Aar1965  0.814
2018 Ruggeri J, Carvalho-E-Silva SP, James TY, Toledo LF. Amphibian chytrid infection is influenced by rainfall seasonality and water availability. Diseases of Aquatic Organisms. 127: 107-115. PMID 29384480 DOI: 10.3354/Dao03191  0.564
2018 Castillo BT, Nave LE, Le Moine JM, James TY, Nadelhoffer KJ. Impacts of experimentally accelerated forest succession on belowground plant and fungal communities Soil Biology and Biochemistry. 125: 44-53. DOI: 10.1016/J.Soilbio.2018.06.022  0.569
2018 Yao L, Ju X, James TY, Qiu J, Liu X. Relationship between saccharifying capacity and isolation sources for strains of the Rhizopus arrhizus complex Mycoscience. 59: 409-414. DOI: 10.1016/J.Myc.2018.02.011  0.556
2018 James T. The age of yeast Current Biology. 28. DOI: 10.1016/J.Cub.2018.06.060  0.47
2017 Miller AN, Raudabaugh DB, Iturriaga T, Matheny PB, Petersen RH, Hughes KW, Gube M, Powers RA, James TY, O'Donnell K. First report of the post-fire morel Morchella exuberans in eastern North America. Mycologia. 1-5. PMID 29370582 DOI: 10.1080/00275514.2017.1408294  0.589
2017 Mesquita AFC, Lambertini C, Lyra M, Malagoli LR, James TY, Toledo LF, Haddad CFB, Becker CG. Low resistance to chytridiomycosis in direct-developing amphibians. Scientific Reports. 7: 16605. PMID 29192210 DOI: 10.1038/S41598-017-16425-Y  0.621
2017 Quandt CA, Beaudet D, Corsaro D, Walochnik J, Michel R, Corradi N, James TY. The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism. Elife. 6. PMID 29171834 DOI: 10.7554/Elife.29594  0.621
2017 Phadke SS, Maclean CJ, Zhao SY, Mueller EA, Michelotti LA, Norman KL, Kumar A, James TY. Genome-Wide Screen for Saccharomyces cerevisiae Genes Contributing to Opportunistic Pathogenicity in an Invertebrate Model Host. G3 (Bethesda, Md.). PMID 29122853 DOI: 10.1534/G3.117.300245  0.639
2017 James TY, Seifert KA. Description of Bifiguratus adelaidae: The hunt ends for one of the "Top 50 Most Wanted Fungi". Mycologia. 1-2. PMID 28876180 DOI: 10.1080/00275514.2017.1372667  0.525
2017 Wang Q, Wang S, Xiong CL, James TY, Zhang XG. Mating-type genes of the anamorphic fungus Ulocladium botrytis affect both asexual sporulation and sexual reproduction. Scientific Reports. 7: 7932. PMID 28801599 DOI: 10.1038/S41598-017-08471-3  0.568
2017 Letcher PM, Longcore JE, James TY, Leite DS, Simmons DR, Powell MJ. Morphology, Ultrastructure, and Molecular Phylogeny of Rozella multimorpha, a New Species in Cryptomycota. The Journal of Eukaryotic Microbiology. PMID 28749611 DOI: 10.1111/Jeu.12452  0.646
2017 Karpov SA, Mamanazarova KS, Popova OV, Aleoshin VV, James TY, Mamkaeva MA, Tcvetkova VS, Vishnyakov AE, Longcore JE. Monoblepharidomycetes diversity includes new parasitic and saprotrophic species with highly intronized rDNA. Fungal Biology. 121: 729-741. PMID 28705399 DOI: 10.1016/J.Funbio.2017.05.002  0.608
2017 Powell MJ, Letcher PM, James TY. Ultrastructural characterization of the host-parasite interface between Allomyces anomalus (Blastocladiomycota) and Rozella allomycis (Cryptomycota). Fungal Biology. 121: 561-572. PMID 28606351 DOI: 10.1016/J.Funbio.2017.03.002  0.552
2017 Berbee ML, James TY, Strullu-Derrien C. Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life. Annual Review of Microbiology. PMID 28525299 DOI: 10.1146/Annurev-Micro-030117-020324  0.564
2017 Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, ... James TY, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859  0.591
2017 Tedersoo L, Bahram M, Puusepp R, Nilsson RH, James TY. Novel soil-inhabiting clades fill gaps in the fungal tree of life. Microbiome. 5: 42. PMID 28388929 DOI: 10.1186/S40168-017-0259-5  0.559
2017 Farrer RA, Martel A, Verbrugghe E, Abouelleil A, Ducatelle R, Longcore JE, James TY, Pasmans F, Fisher MC, Cuomo CA. Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi. Nature Communications. 8: 14742. PMID 28322291 DOI: 10.1038/Ncomms14742  0.63
2017 Hérivaux A, Dugé de Bernonville T, Roux C, Clastre M, Courdavault V, Gastebois A, Bouchara JP, James TY, Latgé JP, Martin F, Papon N. The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi. Mbio. 8. PMID 28143977 DOI: 10.1128/Mbio.01739-16  0.566
2017 Letcher PM, Longcore JE, Quandt CA, Leite DD, James TY, Powell MJ. Morphological, molecular, and ultrastructural characterization of Rozella rhizoclosmatii, a new species in Cryptomycota. Fungal Biology. 121: 1-10. PMID 28007212 DOI: 10.1016/J.Funbio.2016.08.008  0.63
2017 Quandt CA, Beaudet D, Corsaro D, Walochnik J, Michel R, Corradi N, James TY. Author response: The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism Elife. DOI: 10.7554/Elife.29594.026  0.581
2017 Becker C, Greenspan S, Tracy K, Dash J, Lambertini C, Jenkinson T, Leite D, Toledo L, Longcore J, James T, Zamudio K. Variation in phenotype and virulence among enzootic and panzootic amphibian chytrid lineages Fungal Ecology. 26: 45-50. DOI: 10.1016/J.Funeco.2016.11.007  0.721
2016 Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, et al. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 108: 1028-1046. PMID 27738200 DOI: 10.3852/16-042  0.815
2016 Nieuwenhuis BP, James TY. The frequency of sex in fungi. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27619703 DOI: 10.1098/Rstb.2015.0540  0.558
2016 Betancourt-Román CM, O'Neil CC, James TY. Rethinking the role of invertebrate hosts in the life cycle of the amphibian chytridiomycosis pathogen. Parasitology. 1-7. PMID 27573338 DOI: 10.1017/S0031182016001360  0.616
2016 Jackson D, Zemenick AT, Malloure B, Quandt CA, James TY. Fine-scale spatial genetic structure of a fungal parasite of coffee scale insects. Journal of Invertebrate Pathology. 139: 34-41. PMID 27449676 DOI: 10.1016/J.Jip.2016.07.007  0.564
2016 Jenkinson TS, Betancourt Román CM, Lambertini C, Valencia-Aguilar A, Rodriguez D, Nunes-de-Almeida CH, Ruggeri J, Belasen AM, da Silva Leite D, Zamudio KR, Longcore JE, Toledo LF, James TY. Amphibian-killing chytrid in Brazil comprises both locally endemic and globally expanding populations. Molecular Ecology. PMID 26939017 DOI: 10.1111/Mec.13599  0.718
2016 Lambertini C, Becker CG, Jenkinson TS, Rodriguez D, da Silva Leite D, James TY, Zamudio KR, Toledo LF. Local phenotypic variation in amphibian-killing fungus predicts infection dynamics Fungal Ecology. 20: 15-21. DOI: 10.1016/J.Funeco.2015.09.014  0.702
2015 James TY, Marino JA, Perfecto I, Vandermeer J. Identification of putative coffee rust mycoparasites using single molecule DNA sequencing of infected pustules. Applied and Environmental Microbiology. PMID 26567299 DOI: 10.1128/Aem.02639-15  0.629
2015 James TY, Toledo LF, Rödder D, da Silva Leite D, Belasen AM, Betancourt-Román CM, Jenkinson TS, Soto-Azat C, Lambertini C, Longo AV, Ruggeri J, Collins JP, Burrowes PA, Lips KR, Zamudio KR, et al. Disentangling host, pathogen, and environmental determinants of a recently emerged wildlife disease: lessons from the first 15 years of amphibian chytridiomycosis research. Ecology and Evolution. 5: 4079-97. PMID 26445660 DOI: 10.1002/Ece3.1672  0.798
2015 Baranova MA, Logacheva MD, Penin AA, Seplyarskiy VB, Safonova YY, Naumenko SA, Klepikova AV, Gerasimov ES, Bazykin GA, James TY, Kondrashov AS. Extraordinary Genetic Diversity in a Wood Decay Mushroom. Molecular Biology and Evolution. 32: 2775-83. PMID 26163667 DOI: 10.1093/Molbev/Msv153  0.588
2015 Duffy MA, James TY, Longworth A. Ecology, virulence, and phylogeny of Blastulidium paedophthorum, a widespread brood parasite of Daphnia. Applied and Environmental Microbiology. PMID 26048938 DOI: 10.1128/Aem.01369-15  0.611
2015 Jerônimo GH, Jesus ALd, Marano AV, James TY, Souza JId, Rocha SCO, Pires-Zottarelli CLA. Diversidade de Blastocladiomycota e Chytridiomycota do Parque Estadual da Ilha do Cardoso, Cananéia, SP, Brasil Hoehnea. 42: 135-163. DOI: 10.1590/2236-8906-32/2014  0.408
2015 de Jesus AL, Marano AV, de Souza JI, James TY, Jerônimo GH, Rocha SCO, Gonçalves DR, Boro MC, Pires-Zottarelli CLA. Achlya catenulata sp. nov., a new Saprolegniales (Oomycetes, Straminipila) from Brazilian mangrove swamp Phytotaxa. 212: 221-228. DOI: 10.11646/phytotaxa.212.3.4  0.453
2015 Haag KL, James TY, Pombert JF, Larsson R, Schaer TMM, Refardt D, Ebert D. Correction: Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 43, (15480-15485) DOI: 10.1073/pnas.1410442111) Proceedings of the National Academy of Sciences of the United States of America. 112: E1162. DOI: 10.1073/Pnas.1502848112  0.574
2015 James T, Lane M, Crowe D, Pullen W. A blind insertion airway device in dogs as an alternative to traditional endotracheal intubation Veterinary Journal. 203: 187-191. DOI: 10.1016/j.tvjl.2014.12.021  0.41
2015 Grossart HP, Wurzbacher C, James TY, Kagami M. Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi Fungal Ecology. DOI: 10.1016/J.Funeco.2015.06.004  0.623
2015 Lazarus KL, James TY. Surveying the biodiversity of the Cryptomycota using a targeted PCR approach Fungal Ecology. 14: 62-70. DOI: 10.1016/J.Funeco.2014.11.004  0.607
2015 James TY. Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Fungal Biology Reviews. 29: 167-178. DOI: 10.1016/J.Fbr.2015.10.002  0.582
2014 Diez JM, Ibáñez I, Silander JA, Primack R, Higuchi H, Kobori H, Sen A, James TY. Beyond seasonal climate: statistical estimation of phenological responses to weather. Ecological Applications : a Publication of the Ecological Society of America. 24: 1793-802. PMID 29210238 DOI: 10.1890/13-1533.1  0.539
2014 Menkis A, Urbina H, James TY, Rosling A. Archaeorhizomyces borealis sp. nov. and a sequence-based classification of related soil fungal species. Fungal Biology. 118: 943-55. PMID 25457942 DOI: 10.1016/J.Funbio.2014.08.005  0.618
2014 Haag KL, James TY, Pombert JF, Larsson R, Schaer TM, Refardt D, Ebert D. Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites. Proceedings of the National Academy of Sciences of the United States of America. 111: 15480-5. PMID 25313038 DOI: 10.1073/Pnas.1410442111  0.633
2014 Seplyarskiy VB, Logacheva MD, Penin AA, Baranova MA, Leushkin EV, Demidenko NV, Klepikova AV, Kondrashov FA, Kondrashov AS, James TY. Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity. Molecular Biology and Evolution. 31: 3016-25. PMID 25135947 DOI: 10.1093/Molbev/Msu242  0.639
2014 Shaw SD, Berger L, Bell S, Dodd S, James TY, Skerratt LF, Bishop PJ, Speare R. Baseline cutaneous bacteria of free-living New Zealand native frogs (Leiopelma archeyi and Leiopelma hochstetteri) and implications for their role in defense against the amphibian chytrid (Batrachochytrium dendrobatidis). Journal of Wildlife Diseases. 50: 723-32. PMID 25121401 DOI: 10.7589/2013-07-186  0.582
2014 Molloy DP, Glockling SL, Siegfried CA, Beakes GW, James TY, Mastitsky SE, Wurdak E, Giamberini L, Gaylo MJ, Nemeth MJ. Aquastella gen. nov.: a new genus of saprolegniaceous oomycete rotifer parasites related to Aphanomyces, with unique sporangial outgrowths. Fungal Biology. 118: 544-58. PMID 25088070 DOI: 10.1016/J.Funbio.2014.01.007  0.619
2014 Beakes GW, Glockling SL, James TY. A new oomycete species parasitic in nematodes, Chlamydomyzium dictyuchoides sp. nov.: developmental biology and phylogenetic studies. Fungal Biology. 118: 527-43. PMID 25088069 DOI: 10.1016/J.Funbio.2014.04.005  0.64
2014 Toome M, Ohm RA, Riley RW, James TY, Lazarus KL, Henrissat B, Albu S, Boyd A, Chow J, Clum A, Heller G, Lipzen A, Nolan M, Sandor L, Zvenigorodsky N, et al. Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae. The New Phytologist. 202: 554-64. PMID 24372469 DOI: 10.1111/Nph.12653  0.625
2014 Morovat A, Catchpole A, Meurisse A, Carlisi A, Bekaert AC, Rousselle O, Paddon M, James T, Cavalier E. IDS iSYS automated intact procollagen-1-N-terminus pro-peptide assay: method evaluation and reference intervals in adults and children. Clinical Chemistry and Laboratory Medicine. 51: 2009-18. PMID 24072575 DOI: 10.1515/cclm-2012-0531  0.406
2014 Diez JM, Ibáñez I, Silander JA, Primack R, Higuchi H, Kobori H, Sen A, James TY. Beyond seasonal climate: Statistical estimation of phenological responses to weather Ecological Applications. 24: 1793-1802.  0.42
2013 James TY, Pelin A, Bonen L, Ahrendt S, Sain D, Corradi N, Stajich JE. Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia. Current Biology : Cb. 23: 1548-53. PMID 23932404 DOI: 10.1016/J.Cub.2013.06.057  0.617
2013 James TY, Sun S, Li W, Heitman J, Kuo HC, Lee YH, Asiegbu FO, Olson A. Polyporales genomes reveal the genetic architecture underlying tetrapolar and bipolar mating systems. Mycologia. 105: 1374-90. PMID 23928418 DOI: 10.3852/13-162  0.702
2013 van Diepen LT, Olson A, Ihrmark K, Stenlid J, James TY. Extensive trans-specific polymorphism at the mating type locus of the root decay fungus Heterobasidion. Molecular Biology and Evolution. 30: 2286-301. PMID 23864721 DOI: 10.1093/Molbev/Mst126  0.727
2013 Diez JM, James TY, McMunn M, Ibáñez I. Predicting species-specific responses of fungi to climatic variation using historical records. Global Change Biology. 19: 3145-54. PMID 23744587 DOI: 10.1111/Gcb.12278  0.576
2013 Rosenblum EB, James TY, Zamudio KR, Poorten TJ, Ilut D, Rodriguez D, Eastman JM, Richards-Hrdlicka K, Joneson S, Jenkinson TS, Longcore JE, Parra Olea G, Toledo LF, Arellano ML, Medina EM, et al. Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data. Proceedings of the National Academy of Sciences of the United States of America. 110: 9385-90. PMID 23650365 DOI: 10.1073/Pnas.1300130110  0.826
2013 Malloure BD, James TY. Inbreeding depression in urban environments of the bird's nest fungus Cyathus stercoreus (Nidulariaceae: Basidiomycota). Heredity. 110: 355-62. PMID 23169564 DOI: 10.1038/hdy.2012.95  0.542
2013 Heitman J, Sun S, James TY. Evolution of fungal sexual reproduction. Mycologia. 105: 1-27. PMID 23099518 DOI: 10.3852/12-253  0.655
2013 Nagrebetsky A, Jin J, Stevens R, James T, Adler A, Park P, Craven A, Shine B, Farmer A. Diagnostic accuracy of urine dipstick testing in screening for microalbuminuria in type 2 diabetes: a cohort study in primary care. Family Practice. 30: 142-52. PMID 22990027 DOI: 10.1093/fampra/cms057  0.414
2012 Schloegel LM, Toledo LF, Longcore JE, Greenspan SE, Vieira CA, Lee M, Zhao S, Wangen C, Ferreira CM, Hipolito M, Davies AJ, Cuomo CA, Daszak P, James TY. Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade. Molecular Ecology. 21: 5162-77. PMID 22857789 DOI: 10.1111/J.1365-294X.2012.05710.X  0.606
2012 Olson A, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canbäck B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LT, Dunand C, Duplessis S, Durling M, ... ... James TY, et al. Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. The New Phytologist. 194: 1001-13. PMID 22463738 DOI: 10.1111/J.1469-8137.2012.04128.X  0.741
2012 Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 5458-63. PMID 22434909 DOI: 10.1073/Pnas.1119912109  0.771
2012 Watkinson PJ, Barber VS, Amira E, James T, Taylor R, Young JD. The effects of precision, haematocrit, pH and oxygen tension on point-of-care glucose measurement in critically ill patients: a prospective study. Annals of Clinical Biochemistry. 49: 144-51. PMID 22349553 DOI: 10.1258/acb.2011.011162  0.412
2012 Padamsee M, Kumar TK, Riley R, Binder M, Boyd A, Calvo AM, Furukawa K, Hesse C, Hohmann S, James TY, LaButti K, Lapidus A, Lindquist E, Lucas S, Miller K, et al. The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction. Fungal Genetics and Biology : Fg & B. 49: 217-26. PMID 22326418 DOI: 10.1016/J.Fgb.2012.01.007  0.722
2012 James TY, Berbee ML. No jacket required--new fungal lineage defies dress code: recently described zoosporic fungi lack a cell wall during trophic phase. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 94-102. PMID 22131166 DOI: 10.1002/Bies.201100110  0.595
2012 Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Ryu JS, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109) Proceedings of the National Academy of Sciences of the United States of America. 109: 8352. DOI: 10.1073/Pnas.1206295109  0.672
2011 Garland S, James TY, Blair D, Berger L, Skerratt LF. Polymorphic repetitive loci of the amphibian pathogen Batrachochytrium dendrobatidis. Diseases of Aquatic Organisms. 97: 1-9. PMID 22235589 DOI: 10.3354/Dao02396  0.604
2011 Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY. Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science (New York, N.Y.). 333: 876-9. PMID 21836015 DOI: 10.1126/Science.1206958  0.59
2011 van Peer AF, Park SY, Shin PG, Jang KY, Yoo YB, Park YJ, Lee BM, Sung GH, James TY, Kong WS. Comparative genomics of the mating-type loci of the mushroom Flammulina velutipes reveals widespread synteny and recent inversions. Plos One. 6: e22249. PMID 21799803 DOI: 10.1371/Journal.Pone.0022249  0.59
2011 Porter TM, Martin W, James TY, Longcore JE, Gleason FH, Adler PH, Letcher PM, Vilgalys R. Molecular phylogeny of the Blastocladiomycota (Fungi) based on nuclear ribosomal DNA. Fungal Biology. 115: 381-92. PMID 21530920 DOI: 10.1016/J.Funbio.2011.02.004  0.725
2011 James TY, Lee M, van Diepen LT. A single mating-type locus composed of homeodomain genes promotes nuclear migration and heterokaryosis in the white-rot fungus Phanerochaete chrysosporium. Eukaryotic Cell. 10: 249-61. PMID 21131435 DOI: 10.1128/Ec.00212-10  0.614
2011 Longcore JE, Letcher PM, James TY. Homolaphlyctis polyrhiza gen. et sp. nov., a species in the Rhizophydiales (Chytridiomycetes) with multiple rhizoidal axes Mycotaxon. 118: 433-440. DOI: 10.5248/118.433  0.549
2011 James TY, Hoffman Y, Zarka A, Boussiba S. Paraphysoderma sedebokerense, gen. et sp. Nov., an aplanosporic relative of Physoderma (Blastocladiomycota) Mycotaxon. 118: 177-180. DOI: 10.5248/118.177  0.493
2011 Yun HY, Kim YH, James TY. First report of false rust caused by synchytrium minutum on kudzu in Korea Plant Disease. 95: 358. DOI: 10.1094/PDIS-09-10-0697  0.438
2010 Rosenblum EB, Fisher MC, James TY, Stajich JE, Longcore JE, Gentry LR, Poorten TJ. A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis. Diseases of Aquatic Organisms. 92: 131-47. PMID 21268975 DOI: 10.3354/Dao02179  0.63
2010 Strandberg R, Nygren K, Menkis A, James TY, Wik L, Stajich JE, Johannesson H. Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora. Fungal Genetics and Biology : Fg & B. 47: 869-78. PMID 20601044 DOI: 10.1016/J.Fgb.2010.06.008  0.741
2010 Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, ... ... James TY, et al. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proceedings of the National Academy of Sciences of the United States of America. 107: 11889-94. PMID 20547848 DOI: 10.1073/Pnas.1003391107  0.568
2010 Li M, Liang J, Li Y, Feng B, Yang ZL, James TY, Xu J. Genetic diversity of Dahongjun, the commercially important "Big Red Mushroom" from southern China. Plos One. 5: e10684. PMID 20502696 DOI: 10.1371/Journal.Pone.0010684  0.693
2010 Skosireva I, James TY, Sun S, Xu J. Mitochondrial inheritance in haploid x non-haploid crosses in Cryptococcus neoformans. Current Genetics. 56: 163-76. PMID 20127336 DOI: 10.1007/S00294-010-0289-Z  0.689
2010 Schloegel LM, Ferreira CM, James TY, Hipolito M, Longcore JE, Hyatt AD, Yabsley M, Martins AMCRPF, Mazzoni R, Davies AJ, Daszak P. The North American bullfrog as a reservoir for the spread of Batrachochytrium dendrobatidis in Brazil Animal Conservation. 13: 53-61. DOI: 10.1111/J.1469-1795.2009.00307.X  0.59
2009 Stajich JE, Berbee ML, Blackwell M, Hibbett DS, James TY, Spatafora JW, Taylor JW. The fungi. Current Biology : Cb. 19: R840-5. PMID 19788875 DOI: 10.1016/J.Cub.2009.07.004  0.788
2009 James TY, Johansson SB, Johannesson H. Trikaryon formation and nuclear selection in pairings between heterokaryons and homokaryons of the root rot pathogen Heterobasidion parviporum. Mycological Research. 113: 583-90. PMID 19640398 DOI: 10.1016/J.Mycres.2009.01.006  0.707
2009 Parrent JL, James TY, Vasaitis R, Taylor AF. Friend or foe? Evolutionary history of glycoside hydrolase family 32 genes encoding for sucrolytic activity in fungi and its implications for plant-fungal symbioses. Bmc Evolutionary Biology. 9: 148. PMID 19566942 DOI: 10.1186/1471-2148-9-148  0.798
2009 James TY, Litvintseva AP, Vilgalys R, Morgan JA, Taylor JW, Fisher MC, Berger L, Weldon C, du Preez L, Longcore JE. Rapid global expansion of the fungal disease chytridiomycosis into declining and healthy amphibian populations. Plos Pathogens. 5: e1000458. PMID 19478871 DOI: 10.1371/Journal.Ppat.1000458  0.755
2009 Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, ... ... James T, et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America. 106: 1954-9. PMID 19193860 DOI: 10.1073/Pnas.0809575106  0.693
2009 Simmons DR, James TY, Meyer AF, Longcore JE. Lobulomycetales, a new order in the Chytridiomycota. Mycological Research. 113: 450-60. PMID 19138737 DOI: 10.1016/J.Mycres.2008.11.019  0.584
2008 Walker SF, Bosch J, James TY, Litvintseva AP, Oliver Valls JA, Piña S, García G, Rosa GA, Cunningham AA, Hole S, Griffiths R, Fisher MC. Invasive pathogens threaten species recovery programs. Current Biology : Cb. 18: R853-4. PMID 18812076 DOI: 10.1016/J.Cub.2008.07.033  0.608
2008 James TY, Stenlid J, Olson A, Johannesson H. Evolutionary significance of imbalanced nuclear ratios within heterokaryons of the basidiomycete fungus Heterobasidion parviporum. Evolution; International Journal of Organic Evolution. 62: 2279-96. PMID 18637961 DOI: 10.1111/J.1558-5646.2008.00462.X  0.781
2008 Hoffman Y, Aflalo C, Zarka A, Gutman J, James TY, Boussiba S. Isolation and characterization of a novel chytrid species (phylum Blastocladiomycota), parasitic on the green alga Haematococcus. Mycological Research. 112: 70-81. PMID 18222678 DOI: 10.1016/J.Mycres.2007.09.002  0.611
2008 James T. The appeal to law to provide public answers to bioethical questions: it all depends what sort of answers you want. Health Care Analysis : Hca : Journal of Health Philosophy and Policy. 16: 65-76. PMID 18214685 DOI: 10.1007/s10728-007-0074-4  0.444
2008 Warwick SI, Légère A, Simard MJ, James T. Do escaped transgenes persist in nature? The case of an herbicide resistance transgene in a weedy Brassica rapa population Molecular Ecology. 17: 1387-1395. PMID 17971090 DOI: 10.1111/j.1365-294X.2007.03567.x  0.528
2008 Warwick SI, James T, Falk KC. AFLP-based molecular characterization of Brassica rapa and diversity in Canadian spring turnip rape cultivars Plant Genetic Resources: Characterisation and Utilisation. 6: 11-21. DOI: 10.1017/S1479262108923819  0.503
2007 Ceresini PC, Shew HD, James TY, Vilgalys RJ, Cubeta MA. Phylogeography of the Solanaceae-infecting Basidiomycota fungus Rhizoctonia solani AG-3 based on sequence analysis of two nuclear DNA loci. Bmc Evolutionary Biology. 7: 163. PMID 17854492 DOI: 10.1186/1471-2148-7-163  0.68
2007 Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, et al. A higher-level phylogenetic classification of the Fungi. Mycological Research. 111: 509-47. PMID 17572334 DOI: 10.1016/J.Mycres.2007.03.004  0.803
2007 Warwick SI, Gugel RK, Gómez-Campo C, James T. Genetic variation in Eruca vesicaria (L.) Cav Plant Genetic Resources: Characterisation and Utilisation. 5: 142-153. DOI: 10.1017/S1479262107842675  0.445
2006 White MM, James TY, O'Donnell K, Cafaro MJ, Tanabe Y, Sugiyama J. Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia. 98: 872-84. PMID 17486964 DOI: 10.3852/Mycologia.98.6.872  0.618
2006 James TY, Letcher PM, Longcore JE, Mozley-Standridge SE, Porter D, Powell MJ, Griffith GW, Vilgalys R. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia. 98: 860-71. PMID 17486963 DOI: 10.3852/Mycologia.98.6.860  0.72
2006 James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110  0.808
2006 Hoegger PJ, Kilaru S, James TY, Thacker JR, Kües U. Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences. The Febs Journal. 273: 2308-26. PMID 16650005 DOI: 10.1111/J.1742-4658.2006.05247.X  0.622
2006 Henkel TW, James TY, Miller SL, Aime MC, Miller OK. The mycorrhizal status of Pseudotulostoma volvata (Elaphomycetaceae, Eurotiales, Ascomycota). Mycorrhiza. 16: 241-4. PMID 16547736 DOI: 10.1007/S00572-006-0040-2  0.753
2006 James TY, Srivilai P, Kües U, Vilgalys R. Evolution of the bipolar mating system of the mushroom Coprinellus disseminatus from its tetrapolar ancestors involves loss of mating-type-specific pheromone receptor function. Genetics. 172: 1877-91. PMID 16461425 DOI: 10.1534/Genetics.105.051128  0.679
2006 Harris RN, James TY, Lauer A, Simon MA, Patel A. Amphibian pathogen Batrachochytrium dendrobatidis is inhibited by the cutaneous bacteria of amphibian species Ecohealth. 3: 53-56. DOI: 10.1007/S10393-005-0009-1  0.599
2006 Firth-Clark S, Todorov NP, Alberts IL, Williams A, James T, Dean PM. Exhaustive ne novo Design of Low-Molecular-Weight Fragments Against the ATP-Binding Site of DNA-Gyrase. Cheminform. 37. DOI: 10.1002/chin.200630228  0.423
2005 Adl SM, Simpson AG, Farmer MA, Andersen RA, Anderson OR, Barta JR, Bowser SS, Brugerolle G, Fensome RA, Fredericq S, James TY, Karpov S, Kugrens P, Krug J, Lane CE, et al. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. The Journal of Eukaryotic Microbiology. 52: 399-451. PMID 16248873 DOI: 10.1111/J.1550-7408.2005.00053.X  0.557
2004 Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/Ajb.91.10.1446  0.808
2004 James TY, Liou SR, Vilgalys R. The genetic structure and diversity of the A and B mating-type genes from the tropical oyster mushroom, Pleurotus djamor. Fungal Genetics and Biology : Fg & B. 41: 813-25. PMID 15219565 DOI: 10.1016/J.Fgb.2004.04.005  0.77
2004 James TY, Kües U, Rehner SA, Vilgalys R. Evolution of the gene encoding mitochondrial intermediate peptidase and its cosegregation with the A mating-type locus of mushroom fungi. Fungal Genetics and Biology : Fg & B. 41: 381-90. PMID 14761798 DOI: 10.1016/J.Fgb.2003.11.008  0.717
2003 Morehouse EA, James TY, Ganley AR, Vilgalys R, Berger L, Murphy PJ, Longcore JE. Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone. Molecular Ecology. 12: 395-403. PMID 12535090 DOI: 10.1046/J.1365-294X.2003.01732.X  0.715
2002 Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Catherine Aime M, Hofstetter V, Verduin SJ, Larsson E, Baroni TJ, Greg Thorn R, Jacobsson S, Clémençon H, Miller OK. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution. 23: 357-400. PMID 12099793 DOI: 10.1016/S1055-7903(02)00027-1  0.797
2002 James TY, Boulianne RP, Bottoli AP, Granado JD, Aebi M, Kües U. The pab1 gene of Coprinus cinereus encodes a bifunctional protein for para-aminobenzoic acid (PABA) synthesis: implications for the evolution of fused PABA synthases. Journal of Basic Microbiology. 42: 91-103. PMID 11981873 DOI: 10.1002/1521-4028(200205)42:2<91::Aid-Jobm91>3.0.Co;2-8  0.554
2001 Kües U, James TY, Vilgalys R, Challen MP. The chromosomal region containing pab-1, mip, and the A mating type locus of the secondarily homothallic homobasidiomycete Coprinus bilanatus. Current Genetics. 39: 16-24. PMID 11318102 DOI: 10.1007/S002940000176  0.673
2001 James TY, Vilgalys R. Abundance and diversity of Schizophyllum commune spore clouds in the Caribbean detected by selective sampling. Molecular Ecology. 10: 471-9. PMID 11298961 DOI: 10.1046/J.1365-294X.2001.01224.X  0.679
2001 James TY, Moncalvo JM, Li S, Vilgalys R. Polymorphism at the ribosomal DNA spacers and its relation to breeding structure of the widespread mushroom Schizophyllum commune. Genetics. 157: 149-61. PMID 11139499  0.68
2001 Miller O.K. J, Henkel TW, James TY, Miller SL. Pseudotulostoma, a remarkable new volvate genus in the Elaphomycetaceae from Guyana Mycological Research. 105: 1268-1272. DOI: 10.1017/S095375620100466X  0.715
2000 James TY, Porter D, Leander CA, Vilgalys R, Longcore JE. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics Canadian Journal of Botany. 78: 336-350. DOI: 10.1139/B00-009  0.703
1999 James TY, Porter D, Hamrick JL, Vilgalys R. EVIDENCE FOR LIMITED INTERCONTINENTAL GENE FLOW IN THE COSMOPOLITAN MUSHROOM, SCHIZOPHYLLUM COMMUNE. Evolution; International Journal of Organic Evolution. 53: 1665-1677. PMID 28565469 DOI: 10.1111/J.1558-5646.1999.Tb04552.X  0.665
1999 James TY, Porter D, Hamrick JL, Vilgalys R. Evidence for limited intercontinental gene flow in the cosmopolitan mushroom, Schizophyllum commune Evolution. 53: 1665-1677.  0.605
1998 James T, Vege S, Aldrich P, Hamrick JL. Mating systems of three tropical dry forest tree species Biotropica. 30: 587-594. DOI: 10.1111/J.1744-7429.1998.Tb00098.X  0.522
Show low-probability matches.