Xionglei He, Ph.D. - Publications

University of Michigan, Ann Arbor, Ann Arbor, MI 
molecular and genomic evolution

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Wang G, Chen K, Zhang J, Deng S, Xiong J, He X, Fu Y, Miao W. Drivers of mating type composition in Tetrahymena thermophila. Genome Biology and Evolution. PMID 32946549 DOI: 10.1093/gbe/evaa197  0.68
2020 Liu L, Wang Y, Zhang D, Chen Z, Chen X, Su Z, He X. The origin of additive genetic variance driven by positive selection. Molecular Biology and Evolution. PMID 32243529 DOI: 10.1093/molbev/msaa085  0.68
2020 Ye C, Chen Z, Liu Z, Wang F, He X. Defining endogenous barcoding sites for CRISPR/Cas9-based cell lineage tracing in zebrafish. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32173285 DOI: 10.1016/j.jgg.2019.11.012  0.68
2019 Xie C, Zhang LZ, Chen ZL, Zhong WJ, Fang JH, Zhu Y, Xiao MH, Guo ZW, Zhao N, He X, Zhuang SM. A Novel hMTR4-PDIA3P1-miR-125/124-TRAF6 Regulatory Axis and Its Function in NF- B Signaling and Chemoresistance. Hepatology (Baltimore, Md.). PMID 31509261 DOI: 10.1002/hep.30931  0.6
2018 Wen H, Wang HY, He X, Wu CI. On the low reproducibility of cancer studies. National Science Review. 5: 619-624. PMID 31258951 DOI: 10.1093/nsr/nwy021  0.6
2018 Yang B, Ye C, Yan B, He X, Xing K. Assessing the Influence of Dietary History on Gut Microbiota. Current Microbiology. PMID 30569322 DOI: 10.1007/s00284-018-1616-8  0.72
2018 Zhang H, Wang Y, Li J, Chen H, He X, Zhang H, Liang H, Lu J. Biosynthetic energy cost for amino acids decreases in cancer evolution. Nature Communications. 9: 4124. PMID 30297703 DOI: 10.1038/s41467-018-06461-1  0.68
2018 Duan C, Huan Q, Chen X, Wu S, Carey LB, He X, Qian W. Reduced intrinsic DNA curvature leads to increased mutation rate. Genome Biology. 19: 132. PMID 30217230 DOI: 10.1186/s13059-018-1525-y  0.68
2017 Chen H, Wu CI, He X. The genotype-phenotype relationships in the light of natural selection. Molecular Biology and Evolution. PMID 29136190 DOI: 10.1093/molbev/msx288  0.6
2016 Chen P, Wang D, Chen H, Zhou Z, He X. The non-essentiality of essential genes in yeast provides therapeutic insights into a human disease. Genome Research. PMID 27440870 DOI: 10.1101/gr.205955.116  0.72
2016 He X, Liu L. EVOLUTION. Toward a prospective molecular evolution. Science (New York, N.Y.). 352: 769-70. PMID 27174972 DOI: 10.1126/science.aaf7543  0.72
2016 Luo T, He X, Xing K. Lineage analysis by microsatellite loci deep sequencing in mice. Molecular Reproduction and Development. PMID 26932355 DOI: 10.1002/mrd.22632  0.32
2015 Chen H, Lin F, Xing K, He X. Corrigendum: The reverse evolution from multicellularity to unicellularity during carcinogenesis. Nature Communications. 6: 8812. PMID 26511015 DOI: 10.1038/ncomms9812  0.72
2015 Chen H, He X. The convergent cancer evolution toward a single cellular destination. Molecular Biology and Evolution. PMID 26464125 DOI: 10.1093/molbev/msv212  0.6
2015 Ji C, Miao Z, He X. A simple strategy for reducing false negatives in calling variants from single-cell sequencing data. Plos One. 10: e0123789. PMID 25876174 DOI: 10.1371/journal.pone.0123789  0.44
2015 Chen H, Xing K, He X. The dJ/dS Ratio Test Reveals Hundreds of Novel Putative Cancer Drivers. Molecular Biology and Evolution. 32: 2181-5. PMID 25873590 DOI: 10.1093/molbev/msv083  0.72
2015 Xing K, He X. Mutation bias, rather than binding preference, underlies the nucleosome-associated G+C% variation in eukaryotes. Genome Biology and Evolution. 7: 1033-8. PMID 25786433 DOI: 10.1093/gbe/evv053  0.72
2015 Chen H, Lin F, Xing K, He X. The reverse evolution from multicellularity to unicellularity during carcinogenesis. Nature Communications. 6: 6367. PMID 25751731 DOI: 10.1038/ncomms7367  0.72
2015 Xing K, He X. Reassessing the "duon" hypothesis of protein evolution. Molecular Biology and Evolution. 32: 1056-62. PMID 25582593 DOI: 10.1093/molbev/msu409  0.72
2012 Lin F, Xing K, Zhang J, He X. Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proceedings of the National Academy of Sciences of the United States of America. 109: 11752-7. PMID 22753487 DOI: 10.1073/pnas.1201816109  0.72
2012 Chen X, Chen Z, Chen H, Su Z, Yang J, Lin F, Shi S, He X. Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes. Science (New York, N.Y.). 335: 1235-8. PMID 22403392 DOI: 10.1126/science.1217580  0.72
2011 Qian W, He X, Chan E, Xu H, Zhang J. Measuring the evolutionary rate of protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 108: 8725-30. PMID 21555556 DOI: 10.1073/pnas.1104695108  0.72
2011 Xu M, He X. Genetic incompatibility dampens hybrid fertility more than hybrid viability: yeast as a case study. Plos One. 6: e18341. PMID 21494679 DOI: 10.1371/journal.pone.0018341  0.72
2011 Wu H, Wang J, Deng R, Xing K, Xiong Y, Huang J, He X, Wang X. Benefits of random-priming: exhaustive survey of a cDNA library from lung tissue of a SARS patient. Journal of Medical Virology. 83: 574-86. PMID 21328370 DOI: 10.1002/jmv.22012  0.72
2010 Xiong Y, Chen X, Chen Z, Wang X, Shi S, Wang X, Zhang J, He X. RNA sequencing shows no dosage compensation of the active X-chromosome. Nature Genetics. 42: 1043-7. PMID 21102464 DOI: 10.1038/ng.711  0.72
2010 He X, Qian W, Wang Z, Li Y, Zhang J. Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks. Nature Genetics. 42: 272-6. PMID 20101242 DOI: 10.1038/ng.524  0.72
2009 Chen X, Shi S, He X. Evidence for gene length as a determinant of gene coexpression in protein complexes. Genetics. 183: 751-4, 1SI-5SI. PMID 19620395 DOI: 10.1534/genetics.109.105361  0.72
2009 He X, Zhang J. On the growth of scientific knowledge: yeast biology as a case study. Plos Computational Biology. 5: e1000320. PMID 19300476 DOI: 10.1371/journal.pcbi.1000320  0.72
2006 He X, Zhang J. Why do hubs tend to be essential in protein networks? Plos Genetics. 2: e88. PMID 16751849 DOI: 10.1371/journal.pgen.0020088  0.72
2006 He X, Zhang J. Toward a molecular understanding of pleiotropy. Genetics. 173: 1885-91. PMID 16702416 DOI: 10.1534/genetics.106.060269  0.72
2006 He X, Zhang J. Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon? Genetics. 172: 1363-7. PMID 16322517 DOI: 10.1534/genetics.105.049890  0.72
2006 He X, Zhang J. Higher duplicability of less important genes in yeast genomes. Molecular Biology and Evolution. 23: 144-51. PMID 16151181 DOI: 10.1093/molbev/msj015  0.72
2005 He X, Zhang J. Gene complexity and gene duplicability. Current Biology : Cb. 15: 1016-21. PMID 15936271 DOI: 10.1016/j.cub.2005.04.035  0.72
2005 Zhang J, He X. Significant impact of protein dispensability on the instantaneous rate of protein evolution. Molecular Biology and Evolution. 22: 1147-55. PMID 15689524 DOI: 10.1093/molbev/msi101  0.72
2005 He X, Zhang J. Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics. 169: 1157-64. PMID 15654095 DOI: 10.1534/genetics.104.037051  0.72
2003 Qin E, He X, Tian W, Liu Y, Li W, Wen J, Wang J, Fan B, Wu Q, Chang G, Cao W, Xu Z, Yang R, Wang J, Yu M, et al. A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China. Genomics, Proteomics & Bioinformatics. 1: 101-7. PMID 15626340 DOI: 10.1016/S1672-0229(03)01014-3  0.68
2003 Wu W, Wang J, Deng R, Wang X, He X, Long Q. An efficient method for precise gene substitution in the AcMNPV genome by homologous recombination in E. coli. Journal of Virological Methods. 113: 95-101. PMID 14553895 DOI: 10.1016/S0166-0934(03)00225-8  0.72
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