| Year |
Citation |
Score |
| 2022 |
Wang Y, Jiang B, Wu Y, He X, Liu L. Rapid intraspecies evolution of fitness effects of yeast genes. Genome Biology and Evolution. PMID 35482054 DOI: 10.1093/gbe/evac061 |
0.325 |
|
| 2020 |
Liu L, Liu M, Zhang D, Deng S, Chen P, Yang J, Xie Y, He X. Decoupling gene functions from knockout effects by evolutionary analyses. National Science Review. 7: 1169-1180. PMID 34692141 DOI: 10.1093/nsr/nwaa079 |
0.351 |
|
| 2020 |
Liu L, Wang Y, Zhang D, Chen Z, Chen X, Su Z, He X. The origin of additive genetic variance driven by positive selection. Molecular Biology and Evolution. PMID 32243529 DOI: 10.1093/Molbev/Msaa085 |
0.329 |
|
| 2020 |
Liu L, Liu M, Zhang D, Deng S, Chen P, Yang J, Xie Y, He X. Decoupling gene functions from knockout effects by evolutionary analyses National Science Review. 7: 1169-1180. DOI: 10.1093/Nsr/Nwaa079 |
0.47 |
|
| 2018 |
Zhang H, Wang Y, Li J, Chen H, He X, Zhang H, Liang H, Lu J. Biosynthetic energy cost for amino acids decreases in cancer evolution. Nature Communications. 9: 4124. PMID 30297703 DOI: 10.1038/S41467-018-06461-1 |
0.318 |
|
| 2018 |
Duan C, Huan Q, Chen X, Wu S, Carey LB, He X, Qian W. Reduced intrinsic DNA curvature leads to increased mutation rate. Genome Biology. 19: 132. PMID 30217230 DOI: 10.1186/S13059-018-1525-Y |
0.486 |
|
| 2017 |
Chen H, Wu CI, He X. The genotype-phenotype relationships in the light of natural selection. Molecular Biology and Evolution. PMID 29136190 DOI: 10.1093/Molbev/Msx288 |
0.43 |
|
| 2016 |
Chen P, Wang D, Chen H, Zhou Z, He X. The non-essentiality of essential genes in yeast provides therapeutic insights into a human disease. Genome Research. PMID 27440870 DOI: 10.1101/Gr.205955.116 |
0.456 |
|
| 2016 |
He X. The biology complicated by genetic analysis. Molecular Biology and Evolution. PMID 27297473 DOI: 10.1093/Molbev/Msw111 |
0.441 |
|
| 2016 |
He X, Liu L. EVOLUTION. Toward a prospective molecular evolution. Science (New York, N.Y.). 352: 769-70. PMID 27174972 DOI: 10.1126/Science.Aaf7543 |
0.421 |
|
| 2015 |
Chen H, Lin F, Xing K, He X. Corrigendum: The reverse evolution from multicellularity to unicellularity during carcinogenesis. Nature Communications. 6: 8812. PMID 26511015 DOI: 10.1038/Ncomms9812 |
0.308 |
|
| 2015 |
Chen H, He X. The convergent cancer evolution toward a single cellular destination. Molecular Biology and Evolution. PMID 26464125 DOI: 10.1093/Molbev/Msv212 |
0.424 |
|
| 2015 |
Ji C, Miao Z, He X. A simple strategy for reducing false negatives in calling variants from single-cell sequencing data. Plos One. 10: e0123789. PMID 25876174 DOI: 10.1371/Journal.Pone.0123789 |
0.304 |
|
| 2015 |
Chen H, Xing K, He X. The dJ/dS Ratio Test Reveals Hundreds of Novel Putative Cancer Drivers. Molecular Biology and Evolution. 32: 2181-5. PMID 25873590 DOI: 10.1093/Molbev/Msv083 |
0.351 |
|
| 2015 |
Chen H, Lin F, Xing K, He X. The reverse evolution from multicellularity to unicellularity during carcinogenesis. Nature Communications. 6: 6367. PMID 25751731 DOI: 10.1038/Ncomms7367 |
0.4 |
|
| 2015 |
Xing K, He X. Reassessing the "duon" hypothesis of protein evolution. Molecular Biology and Evolution. 32: 1056-62. PMID 25582593 DOI: 10.1093/Molbev/Msu409 |
0.418 |
|
| 2012 |
Lin F, Xing K, Zhang J, He X. Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proceedings of the National Academy of Sciences of the United States of America. 109: 11752-7. PMID 22753487 DOI: 10.1073/Pnas.1201816109 |
0.559 |
|
| 2011 |
Qian W, He X, Chan E, Xu H, Zhang J. Measuring the evolutionary rate of protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 108: 8725-30. PMID 21555556 DOI: 10.1073/Pnas.1104695108 |
0.597 |
|
| 2011 |
Xu M, He X. Genetic incompatibility dampens hybrid fertility more than hybrid viability: yeast as a case study. Plos One. 6: e18341. PMID 21494679 DOI: 10.1371/Journal.Pone.0018341 |
0.365 |
|
| 2011 |
Wu H, Wang J, Deng R, Xing K, Xiong Y, Huang J, He X, Wang X. Benefits of random-priming: exhaustive survey of a cDNA library from lung tissue of a SARS patient. Journal of Medical Virology. 83: 574-86. PMID 21328370 DOI: 10.1002/Jmv.22012 |
0.335 |
|
| 2011 |
He X, Chen X, Xiong Y, Chen Z, Wang X, Shi S, Zhang J. He et al. reply Nature Genetics. 43: 1171-1172. DOI: 10.1038/Ng.1010 |
0.369 |
|
| 2010 |
Xiong Y, Chen X, Chen Z, Wang X, Shi S, Wang X, Zhang J, He X. RNA sequencing shows no dosage compensation of the active X-chromosome. Nature Genetics. 42: 1043-7. PMID 21102464 DOI: 10.1038/Ng.711 |
0.49 |
|
| 2010 |
He X, Qian W, Wang Z, Li Y, Zhang J. Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks. Nature Genetics. 42: 272-6. PMID 20101242 DOI: 10.1038/Ng.524 |
0.588 |
|
| 2009 |
Chen X, Shi S, He X. Evidence for gene length as a determinant of gene coexpression in protein complexes. Genetics. 183: 751-4, 1SI-5SI. PMID 19620395 DOI: 10.1534/Genetics.109.105361 |
0.474 |
|
| 2009 |
He X, Zhang J. On the growth of scientific knowledge: yeast biology as a case study. Plos Computational Biology. 5: e1000320. PMID 19300476 DOI: 10.1371/Journal.Pcbi.1000320 |
0.442 |
|
| 2006 |
He X, Zhang J. Why do hubs tend to be essential in protein networks? Plos Genetics. 2: e88. PMID 16751849 DOI: 10.1371/Journal.Pgen.0020088 |
0.505 |
|
| 2006 |
He X, Zhang J. Toward a molecular understanding of pleiotropy. Genetics. 173: 1885-91. PMID 16702416 DOI: 10.1534/Genetics.106.060269 |
0.621 |
|
| 2006 |
He X, Zhang J. Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon? Genetics. 172: 1363-7. PMID 16322517 DOI: 10.1534/Genetics.105.049890 |
0.604 |
|
| 2006 |
He X, Zhang J. Higher duplicability of less important genes in yeast genomes. Molecular Biology and Evolution. 23: 144-51. PMID 16151181 DOI: 10.1093/Molbev/Msj015 |
0.587 |
|
| 2005 |
He X, Zhang J. Gene complexity and gene duplicability. Current Biology : Cb. 15: 1016-21. PMID 15936271 DOI: 10.1016/J.Cub.2005.04.035 |
0.605 |
|
| 2005 |
Zhang J, He X. Significant impact of protein dispensability on the instantaneous rate of protein evolution. Molecular Biology and Evolution. 22: 1147-55. PMID 15689524 DOI: 10.1093/Molbev/Msi101 |
0.593 |
|
| 2005 |
He X, Zhang J. Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics. 169: 1157-64. PMID 15654095 DOI: 10.1534/Genetics.104.037051 |
0.609 |
|
| 2003 |
Wu W, Wang J, Deng R, Wang X, He X, Long Q. An efficient method for precise gene substitution in the AcMNPV genome by homologous recombination in E. coli. Journal of Virological Methods. 113: 95-101. PMID 14553895 DOI: 10.1016/S0166-0934(03)00225-8 |
0.344 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2012 |
Chen X, Chen Z, Chen H, Su Z, Yang J, Lin F, Shi S, He X. Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes. Science (New York, N.Y.). 335: 1235-8. PMID 22403392 DOI: 10.1126/Science.1217580 |
0.284 |
|
| 2020 |
Wang G, Chen K, Zhang J, Deng S, Xiong J, He X, Fu Y, Miao W. Drivers of mating type composition in Tetrahymena thermophila. Genome Biology and Evolution. PMID 32946549 DOI: 10.1093/Gbe/Evaa197 |
0.268 |
|
| 2019 |
Liu L, Wang J, Yang JR, Wang F, He X. The expression tractability of biological traits shaped by natural selection. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 31471211 DOI: 10.1016/j.jgg.2019.08.001 |
0.264 |
|
| 2023 |
Wang K, Hou L, Wang X, Zhai X, Lu Z, Zi Z, Zhai W, He X, Curtis C, Zhou D, Hu Z. PhyloVelo enhances transcriptomic velocity field mapping using monotonically expressed genes. Nature Biotechnology. PMID 37524958 DOI: 10.1038/s41587-023-01887-5 |
0.259 |
|
| 2020 |
Chen J, Wang M, He X, Yang JR, Chen X. The evolution of sex chromosome dosage compensation in animals. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 33579636 DOI: 10.1016/j.jgg.2020.10.005 |
0.257 |
|
| 2023 |
Wang J, Ma S, Yu P, He X. Evolution of Human Brain Left-Right Asymmetry: Old Genes with New Functions. Molecular Biology and Evolution. 40. PMID 37561991 DOI: 10.1093/molbev/msad181 |
0.211 |
|
| 2016 |
Luo T, He X, Xing K. Lineage analysis by microsatellite loci deep sequencing in mice. Molecular Reproduction and Development. PMID 26932355 DOI: 10.1002/mrd.22632 |
0.192 |
|
| 2003 |
Qin E, He X, Tian W, Liu Y, Li W, Wen J, Wang J, Fan B, Wu Q, Chang G, Cao W, Xu Z, Yang R, Wang J, Yu M, et al. A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China. Genomics, Proteomics & Bioinformatics. 1: 101-7. PMID 15626340 DOI: 10.1016/S1672-0229(03)01014-3 |
0.164 |
|
| 2015 |
Xing K, He X. Mutation bias, rather than binding preference, underlies the nucleosome-associated G+C% variation in eukaryotes. Genome Biology and Evolution. 7: 1033-8. PMID 25786433 DOI: 10.1093/gbe/evv053 |
0.149 |
|
| 2022 |
Wei T, Lai W, Chen Q, Zhang Y, Sun C, He X, Zhao G, Fu X, Liu C. Exploiting spatial dimensions to enable parallelized continuous directed evolution. Molecular Systems Biology. 18: e10934. PMID 36129229 DOI: 10.15252/msb.202210934 |
0.144 |
|
| 2021 |
Liu K, Deng S, Ye C, Yao Z, Wang J, Gong H, Liu L, He X. Mapping single-cell-resolution cell phylogeny reveals cell population dynamics during organ development. Nature Methods. 18: 1506-1514. PMID 34857936 DOI: 10.1038/s41592-021-01325-x |
0.133 |
|
| 2020 |
Ye C, Chen Z, Liu Z, Wang F, He X. Defining endogenous barcoding sites for CRISPR/Cas9-based cell lineage tracing in zebrafish. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32173285 DOI: 10.1016/j.jgg.2019.11.012 |
0.133 |
|
| 2021 |
Pang R, Xing K, Yuan L, Liang Z, Chen M, Yue X, Dong Y, Ling Y, He X, Li X, Zhang W. Peroxiredoxin alleviates the fitness costs of imidacloprid resistance in an insect pest of rice. Plos Biology. 19: e3001190. PMID 33844686 DOI: 10.1371/journal.pbio.3001190 |
0.127 |
|
| 2023 |
Xiong X, Liu K, Li Z, Xia FN, Ruan XM, He X, Li JF. Split complementation of base editors to minimize off-target edits. Nature Plants. PMID 37845337 DOI: 10.1038/s41477-023-01540-8 |
0.126 |
|
| 2022 |
Hong R, He X. Development of a high-fidelity Cas9-dependent adenine base editor (ABE) system for genome editing with high-fidelity Cas9 variants. Genes & Diseases. 10: 705-707. PMID 37396512 DOI: 10.1016/j.gendis.2022.07.022 |
0.125 |
|
| 2024 |
Deng S, Gong H, Zhang D, Zhang M, He X. A statistical method for quantifying progenitor cells reveals incipient cell fate commitments. Nature Methods. PMID 38379073 DOI: 10.1038/s41592-024-02189-7 |
0.12 |
|
| 2022 |
Ruan Y, Hou M, Tang X, He X, Lu X, Lu J, Wu CI, Wen H. The runaway evolution of SARS-CoV-2 leading to the highly evolved Delta strain. Molecular Biology and Evolution. PMID 35234869 DOI: 10.1093/molbev/msac046 |
0.12 |
|
| 2021 |
Ruan Y, Luo Z, Tang X, Li G, Wen H, He X, Lu X, Lu J, Wu CI. On the founder effect in COVID-19 outbreaks: how many infected travelers may have started them all? National Science Review. 8: nwaa246. PMID 34676089 DOI: 10.1093/nsr/nwaa246 |
0.116 |
|
| 2020 |
Zhang H, Fu Q, Shi X, Pan Z, Yang W, Huang Z, Tang T, He X, Zhang R. Human A-to-I RNA editing SNP loci are enriched in GWAS signals for autoimmune diseases and under balancing selection. Genome Biology. 21: 288. PMID 33256812 DOI: 10.1186/s13059-020-02205-x |
0.108 |
|
| 2020 |
Ruan Y, Wen H, He X, Wu CI. A theoretical exploration of the origin and early evolution of a pandemic. Science Bulletin. PMID 33520335 DOI: 10.1016/j.scib.2020.12.020 |
0.107 |
|
| 2021 |
Deng S, Xing K, He X. Mutation signatures inform the natural host of SARS-CoV-2. National Science Review. 9: nwab220. PMID 35211321 DOI: 10.1093/nsr/nwab220 |
0.1 |
|
| 2021 |
Ruan Y, Wen H, Hou M, He Z, Lu X, Xue Y, He X, Zhang YP, Wu CI. The twin-beginnings of COVID-19 in Asia and Europe-one prevails quickly. National Science Review. 9: nwab223. PMID 35497643 DOI: 10.1093/nsr/nwab223 |
0.092 |
|
| 2019 |
Xie C, Zhang LZ, Chen ZL, Zhong WJ, Fang JH, Zhu Y, Xiao MH, Guo ZW, Zhao N, He X, Zhuang SM. A Novel hMTR4-PDIA3P1-miR-125/124-TRAF6 Regulatory Axis and Its Function in NF- B Signaling and Chemoresistance. Hepatology (Baltimore, Md.). PMID 31509261 DOI: 10.1002/hep.30931 |
0.084 |
|
| 2021 |
Yao Z, Liu K, Deng S, He X. An instantaneous coalescent method insensitive to population structure. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34001433 DOI: 10.1016/j.jgg.2021.03.005 |
0.078 |
|
| 2018 |
Wen H, Wang HY, He X, Wu CI. On the low reproducibility of cancer studies. National Science Review. 5: 619-624. PMID 31258951 DOI: 10.1093/nsr/nwy021 |
0.073 |
|
| 2022 |
Liu Y, Chen H, Duan W, Zhang X, He X, Nielsen R, Ma L, Zhai W. Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus. Viruses. 14. PMID 36146872 DOI: 10.3390/v14092065 |
0.058 |
|
| 2023 |
Deng S, He X. Tree of life at two levels: from species to cell. Science Bulletin. 68: 2515-2518. PMID 37778944 DOI: 10.1016/j.scib.2023.09.018 |
0.055 |
|
| 2018 |
Yang B, Ye C, Yan B, He X, Xing K. Assessing the Influence of Dietary History on Gut Microbiota. Current Microbiology. PMID 30569322 DOI: 10.1007/s00284-018-1616-8 |
0.054 |
|
| 2023 |
Pang R, Li S, Chen W, Yuan L, Xiao H, Xing K, Li Y, Zhang Z, He X, Zhang W. Insecticide resistance reduces the profitability of insect-resistant rice cultivars. Journal of Advanced Research. PMID 37499938 DOI: 10.1016/j.jare.2023.07.009 |
0.051 |
|
| 2022 |
Cao Y, Chen L, Chen H, Cun Y, Dai X, Du H, Gao F, Guo F, Guo Y, Hao P, He S, He S, He X, Hu Z, Hoh BP, et al. Was Wuhan the early epicenter of the COVID-19 pandemic?-A critique. National Science Review. 10: nwac287. PMID 37089192 DOI: 10.1093/nsr/nwac287 |
0.012 |
|
| Hide low-probability matches. |