Ana L. Caicedo, Ph.D. - Publications

Washington University, Saint Louis, St. Louis, MO 
Plant Evolutionary Genetics

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Pereira L, Sapkota M, Alonge M, Zheng Y, Zhang Y, Razifard H, Taitano NK, Schatz MC, Fernie AR, Wang Y, Fei Z, Caicedo AL, Tieman DM, van der Knaap E. Natural Genetic Diversity in Tomato Flavor Genes. Frontiers in Plant Science. 12: 642828. PMID 34149747 DOI: 10.3389/fpls.2021.642828  0.367
2020 Hoyos V, Plaza G, Li X, Caicedo AL. Something old, something new: Evolution of Colombian weedy rice ( spp.) through de novo de-domestication, exotic gene flow, and hybridization. Evolutionary Applications. 13: 1968-1983. PMID 32908598 DOI: 10.1111/Eva.12955  0.523
2020 Alonge M, Wang X, Benoit M, Soyk S, Pereira L, Zhang L, Suresh H, Ramakrishnan S, Maumus F, Ciren D, Levy Y, Harel TH, Shalev-Schlosser G, Amsellem Z, Razifard H, ... Caicedo AL, et al. Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell. PMID 32553272 DOI: 10.1016/J.Cell.2020.05.021  0.473
2020 Goad DM, Jia Y, Gibbons A, Liu Y, Gealy D, Caicedo AL, Olsen KM. Identification of Novel QTL Conferring Sheath Blight Resistance in Two Weedy Rice Mapping Populations. Rice (New York, N.Y.). 13: 21. PMID 32206941 DOI: 10.1186/S12284-020-00381-9  0.611
2020 Razifard H, Ramos A, Della Valle AL, Bodary C, Goetz E, Manser EJ, Li X, Zhang L, Visa S, Tieman D, van der Knaap E, Caicedo AL. Genomic Evidence for Complex Domestication History of the Cultivated Tomato in Latin America. Molecular Biology and Evolution. PMID 31912142 DOI: 10.1093/Molbev/Msz297  0.444
2019 Vigueira CC, Qi X, Song BK, Li LF, Caicedo AL, Jia Y, Olsen KM. Call of the wild rice: shapes weedy rice evolution in Southeast Asia. Evolutionary Applications. 12: 93-104. PMID 30622638 DOI: 10.1111/Eva.12581  0.685
2019 Hoyos V, Plaza G, Caicedo AL. Characterization of the phenotypic variability in Colombian weedy rice (Oryza spp.) Weed Science. 67: 441-452. DOI: 10.1017/Wsc.2019.18  0.443
2018 Huang Z, Kelly S, Matsuo R, Li LF, Li Y, Olsen KM, Jia Y, Caicedo AL. The Role of Standing Variation in the Evolution of Weediness Traits in South Asian Weedy Rice ( spp.. G3 (Bethesda, Md.). PMID 30275171 DOI: 10.1534/G3.118.200605  0.697
2017 Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, ... ... Caicedo AL, et al. Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature Communications. 8: 2184. PMID 29259172 DOI: 10.1038/S41467-017-02292-8  0.434
2017 Li LF, Li YL, Jia Y, Caicedo AL, Olsen KM. Signatures of adaptation in the weedy rice genome. Nature Genetics. PMID 28369039 DOI: 10.1038/Ng.3825  0.649
2017 Huang Z, Young ND, Reagon M, Hyma KE, Olsen KM, Jia Y, Caicedo AL. All roads lead to weediness: patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza. Molecular Ecology. PMID 28345200 DOI: 10.1111/Mec.14120  0.684
2017 Singh V, Singh S, Black H, Boyett V, Basu S, Gealy D, Gbur E, Pereira A, Scott RC, Caicedo A, Burgos NR. Introgression of Clearfield™ rice crop traits into weedy red rice outcrosses Field Crops Research. 207: 13-23. DOI: 10.1016/J.Fcr.2017.03.004  0.438
2016 Tyler L, Lee SJ, Young ND, DeIulio GA, Benavente E, Reagon M, Sysopha J, Baldini RM, Troìa A, Hazen SP, Caicedo AL. Population Structure in the Model Grass Is Highly Correlated with Flowering Differences across Broad Geographic Areas. The Plant Genome. 9. PMID 27898828 DOI: 10.3835/Plantgenome2015.08.0074  0.494
2016 Cui Y, Song BK, Li LF, Li YL, Huang Z, Caicedo AL, Jia Y, Olsen KM. Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice. G3 (Bethesda, Md.). PMID 27729434 DOI: 10.1534/G3.116.035881  0.68
2016 Singh V, Burgos NR, Singh S, Gealy DR, Gbur EE, Caicedo AL. Impact of volunteer rice infestation on yield and grain quality of rice. Pest Management Science. PMID 27328627 DOI: 10.1002/Ps.4343  0.323
2016 Tyler L, Lee SJ, Young ND, Deiulio GA, Benavente E, Reagon M, Sysopha J, Baldini RM, Troìa A, Hazen SP, Caicedo AL. Population structure in the model grass Brachypodium distachyon is highly correlated with flowering differences across broad geographic areas Plant Genome. 9. DOI: 10.3835/plantgenome2015.08.0074  0.342
2016 Liu Y, Jia Y, Gealy D, Goad DM, Caicedo AL, Olsen KM. Marker development for rice blast resistance gene Pi66(T) and application in the USDA rice mini-core collection Crop Science. 56: 1001-1008. DOI: 10.2135/Cropsci2015.07.0422  0.619
2015 López-Alvarez D, Manzaneda AJ, Rey PJ, Giraldo P, Benavente E, Allainguillaume J, Mur L, Caicedo AL, Hazen SP, Breiman A, Ezrati S, Catalán P. Environmental niche variation and evolutionary diversification of the Brachypodium distachyon grass complex species in their native circum-Mediterranean range. American Journal of Botany. 102: 1073-88. PMID 26199365 DOI: 10.3732/Ajb.1500128  0.34
2015 Qi X, Liu Y, Vigueira CC, Young ND, Caicedo AL, Jia Y, Gealy DR, Olsen KM. More than one way to evolve a weed: parallel evolution of US weedy rice through independent genetic mechanisms. Molecular Ecology. PMID 26031196 DOI: 10.1111/Mec.13256  0.656
2015 Liu Y, Qi X, Gealy D, Olsen KM, Caicedo AL, Jia Y. QTLs Analysis for Resistance to Blast Disease in US Weedy Rice. Molecular Plant-Microbe Interactions : Mpmi. PMID 25761210 DOI: 10.1094/Mpmi-12-14-0386-R  0.601
2015 Ziska LH, Gealy DR, Burgos N, Caicedo AL, Gressel J, Lawton-Rauh AL, Avila LA, Theisen G, Norsworthy J, Ferrero A, Vidotto F, Johnson DE, Ferreira FG, Marchesan E, Menezes V, et al. Weedy (Red) Rice. An Emerging Constraint to Global Rice Production. Advances in Agronomy. 129: 181-228. DOI: 10.1016/Bs.Agron.2014.09.003  0.711
2015 Liu Y, Qi X, Young ND, Olsen KM, Caicedo AL, Jia Y. Characterization of resistance genes to rice blast fungus Magnaporthe oryzae in a “Green Revolution” rice variety Molecular Breeding. 35. DOI: 10.1007/S11032-015-0256-Y  0.63
2014 Thurber CS, Reagon M, Olsen KM, Jia Y, Caicedo AL. The evolution of flowering strategies in US weedy rice. American Journal of Botany. 101: 1737-47. PMID 25326616 DOI: 10.3732/Ajb.1400154  0.593
2014 Burgos NR, Singh V, Tseng TM, Black H, Young ND, Huang Z, Hyma KE, Gealy DR, Caicedo AL. The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice. Plant Physiology. 166: 1208-20. PMID 25122473 DOI: 10.1104/Pp.114.242719  0.458
2014 Craig SM, Reagon M, Resnick LE, Caicedo AL. Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US. Plos One. 9: e86647. PMID 24489758 DOI: 10.1371/Journal.Pone.0086647  0.498
2013 Thurber CS, Jia MH, Jia Y, Caicedo AL. Similar traits, different genes? Examining convergent evolution in related weedy rice populations. Molecular Ecology. 22: 685-98. PMID 23205731 DOI: 10.1111/Mec.12147  0.508
2013 Vigueira CC, Olsen KM, Caicedo AL. The red queen in the corn: agricultural weeds as models of rapid adaptive evolution. Heredity. 110: 303-11. PMID 23188175 DOI: 10.1038/Hdy.2012.104  0.623
2011 Lee S, Jia Y, Jia M, Gealy DR, Olsen KM, Caicedo AL. Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA. Plos One. 6: e26260. PMID 22043312 DOI: 10.1371/Journal.Pone.0026260  0.655
2011 Hyma KE, Caicedo AL. Shedding light on the evolution of plasticity in natural populations. Molecular Ecology. 20: 3491-3. PMID 21884290 DOI: 10.1111/J.1365-294X.2011.05215.X  0.396
2011 Reagon M, Thurber CS, Olsen KM, Jia Y, Caicedo AL. The long and the short of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice. Molecular Ecology. 20: 3743-56. PMID 21854475 DOI: 10.1111/J.1365-294X.2011.05216.X  0.631
2011 Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, Vain P, Brutnell T, Sibout R, Bevan M, Budak H, Caicedo AL, Gao C, Gu Y, Hazen SP, Holt BF, et al. Brachypodium as a model for the grasses: today and the future. Plant Physiology. 157: 3-13. PMID 21771916 DOI: 10.1104/Pp.111.179531  0.347
2011 Thurber CS, Hepler PK, Caicedo AL. Timing is everything: early degradation of abscission layer is associated with increased seed shattering in U.S. weedy rice. Bmc Plant Biology. 11: 14. PMID 21235796 DOI: 10.1186/1471-2229-11-14  0.385
2010 Mather KA, Molina J, Flowers JM, Rubinstein S, Rauh BL, Lawton-Rauh A, Caicedo AL, McNally KL, Purugganan MD. Migration, isolation and hybridization in island crop populations: the case of Madagascar rice. Molecular Ecology. 19: 4892-905. PMID 20964753 DOI: 10.1111/J.1365-294X.2010.04845.X  0.74
2010 Gross BL, Reagon M, Hsu SC, Caicedo AL, Jia Y, Olsen KM. Seeing red: the origin of grain pigmentation in US weedy rice. Molecular Ecology. 19: 3380-93. PMID 20584133 DOI: 10.1111/J.1365-294X.2010.04707.X  0.648
2010 Thurber CS, Reagon M, Gross BL, Olsen KM, Jia Y, Caicedo AL. Molecular evolution of shattering loci in U.S. weedy rice. Molecular Ecology. 19: 3271-84. PMID 20584132 DOI: 10.1111/J.1365-294X.2010.04708.X  0.657
2010 Reagon M, Thurber CS, Gross BL, Olsen KM, Jia Y, Caicedo AL. Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. Bmc Evolutionary Biology. 10: 180. PMID 20550656 DOI: 10.1186/1471-2148-10-180  0.656
2009 Lee S, Costanzo S, Jia Y, Olsen KM, Caicedo AL. Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome Oryza species. Genetics. 183: 1315-25. PMID 19822730 DOI: 10.1534/Genetics.109.108266  0.584
2009 Caicedo AL, Richards C, Ehrenreich IM, Purugganan MD. Complex rearrangements lead to novel chimeric gene fusion polymorphisms at the Arabidopsis thaliana MAF2-5 flowering time gene cluster. Molecular Biology and Evolution. 26: 699-711. PMID 19139056 DOI: 10.1093/Molbev/Msn300  0.777
2008 Caicedo AL. Geographic diversity cline of R gene homologs in wild populations of Solanum pimpinellifolium (Solanaceae). American Journal of Botany. 95: 393-8. PMID 21632363 DOI: 10.3732/Ajb.95.3.393  0.442
2008 Shimizu KK, Reininga JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, Purugganan MD. Retraction. Science (New York, N.Y.). 320: 176. PMID 18403691 DOI: 10.1126/science.320.5873.176a  0.657
2007 Mather KA, Caicedo AL, Polato NR, Olsen KM, McCouch S, Purugganan MD. The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics. 177: 2223-32. PMID 17947413 DOI: 10.1534/Genetics.107.079616  0.76
2007 Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD. Genome-wide patterns of nucleotide polymorphism in domesticated rice. Plos Genetics. 3: 1745-56. PMID 17907810 DOI: 10.1371/Journal.Pgen.0030163  0.725
2007 Korves TM, Schmid KJ, Caicedo AL, Mays C, Stinchcombe JR, Purugganan MD, Schmitt J. Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. The American Naturalist. 169: E141-57. PMID 17427127 DOI: 10.1086/513111  0.655
2007 Olsen KM, Caicedo AL, Jia Y. Evolutionary genomics of weedy rice in the USA Journal of Integrative Plant Biology. 49: 811-816. DOI: 10.1111/J.1744-7909.2007.00506.X  0.656
2006 Olsen KM, Caicedo AL, Polato N, McClung A, McCouch S, Purugganan MD. Selection under domestication: evidence for a sweep in the rice waxy genomic region. Genetics. 173: 975-83. PMID 16547098 DOI: 10.1534/Genetics.106.056473  0.71
2005 Stinchcombe JR, Caicedo AL, Hopkins R, Mays C, Boyd EW, Purugganan MD, Schmitt J. Vernalization sensitivity in Arabidopsis thaliana (Brassicaceae): the effects of latitude and FLC variation. American Journal of Botany. 92: 1701-7. PMID 21646087 DOI: 10.3732/Ajb.92.10.1701  0.596
2005 Caicedo AL, Purugganan MD. Comparative plant genomics. Frontiers and prospects. Plant Physiology. 138: 545-7. PMID 15955910 DOI: 10.1104/Pp.104.900148  0.565
2004 Shimizu KK, Cork JM, Caicedo AL, Mays CA, Moore RC, Olsen KM, Ruzsa S, Coop G, Bustamante CD, Awadalla P, Purugganan MD. Darwinian selection on a selfing locus. Science (New York, N.Y.). 306: 2081-4. PMID 15604405 DOI: 10.1126/Science.1103776  0.728
2004 Caicedo AL, Schaal BA. Heterogeneous evolutionary processes affect R gene diversity in natural populations of Solanum pimpinellifolium. Proceedings of the National Academy of Sciences of the United States of America. 101: 17444-9. PMID 15583124 DOI: 10.1073/Pnas.0407899101  0.673
2004 Caicedo AL, Stinchcombe JR, Olsen KM, Schmitt J, Purugganan MD. Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait. Proceedings of the National Academy of Sciences of the United States of America. 101: 15670-5. PMID 15505218 DOI: 10.1073/Pnas.0406232101  0.727
2004 Caicedo AL, Schaal BA. Population structure and phylogeography of Solanum pimpinellifolium inferred from a nuclear gene. Molecular Ecology. 13: 1871-82. PMID 15189210 DOI: 10.1111/J.1365-294X.2004.02191.X  0.683
2003 Schaal BA, Gaskin JF, Caicedo AL. The Wilhelmine W. Key 2002 Invitational Lecture. Phylogeography, haplotype trees, and invasive plant species. The Journal of Heredity. 94: 197-204. PMID 12816959 DOI: 10.1093/Jhered/Esg060  0.78
2001 Kover PX, Caicedo AL. The genetic architecture of disease resistance in plants and the maintenance of recombination by parasites. Molecular Ecology. 10: 1-16. PMID 11251782 DOI: 10.1046/J.1365-294X.2001.01124.X  0.402
1999 Caicedo AL, Schaal BA, Kunkel BN. Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 96: 302-6. PMID 9874813 DOI: 10.1073/Pnas.96.1.302  0.655
1999 Caicedo AL, Gaitán E, Duque MC, Toro Chica O, Debouck DG, Tohme J. AFLP fingerprinting of Phaseolus lunatus L. and Related wild species from South America Crop Science. 39: 1497-1507. DOI: 10.2135/Cropsci1999.3951497X  0.393
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