John G. Burleigh, Ph.D. - Publications

Affiliations: 
2002 University of Missouri - Columbia, Columbia, MO, United States 

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033  1
2015 Burleigh JG, Kimball RT, Braun EL. Building the avian tree of life using a large-scale, sparse supermatrix Molecular Phylogenetics and Evolution. 84: 53-63. PMID 25550149 DOI: 10.1016/J.Ympev.2014.12.003  1
2015 Chaudhary R, Boussau B, Burleigh JG, Fernández-Baca D. Assessing approaches for inferring species trees from multi-copy genes. Systematic Biology. 64: 325-39. PMID 25540456 DOI: 10.1093/Sysbio/Syu128  1
2015 Sun M, Soltis DE, Soltis PS, Zhu X, Burleigh JG, Chen Z. Deep phylogenetic incongruence in the angiosperm clade Rosidae. Molecular Phylogenetics and Evolution. 83: 156-66. PMID 25463749 DOI: 10.1016/J.Ympev.2014.11.003  1
2015 Chaudhary R, Fernández-Baca D, Burleigh JG. MulRF: a software package for phylogenetic analysis using multi-copy gene trees. Bioinformatics (Oxford, England). 31: 432-3. PMID 25273112 DOI: 10.1093/Bioinformatics/Btu648  1
2015 Daly M, Endara LA, Burleigh JG. Peeking behind the page: Using natural language processing to identify and explore the characters used to classify sea anemones Zoologischer Anzeiger. 256: 54-60. DOI: 10.1016/J.Jcz.2015.03.004  1
2015 Chaudhary R, Fernández-Baca D, Burleigh JG. Constructing and employing tree alignment graphs for phylogenetic synthesis Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9199: 97-108. DOI: 10.1007/978-3-319-21233-3_8  1
2014 Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17  1
2014 Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/Pnas.1323926111  1
2014 Pendleton AL, Smith KE, Feau N, Martin FM, Grigoriev IV, Hamelin R, Nelson CD, Burleigh JG, Davis JM. Duplications and losses in gene families of rust pathogens highlight putative effectors. Frontiers in Plant Science. 5: 299. PMID 25018762 DOI: 10.3389/fpls.2014.00299  1
2014 Qiu F, Kitchen A, Burleigh JG, Miyamoto MM. Scombroid fishes provide novel insights into the trait/rate associations of molecular evolution. Journal of Molecular Evolution. 78: 338-48. PMID 24810994 DOI: 10.1007/S00239-014-9621-4  1
2014 Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG. From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. Bmc Evolutionary Biology. 14: 23. PMID 24533922 DOI: 10.1186/1471-2148-14-23  1
2014 Cobb R, Elhesha R, Burleigh JG, Kahveci T. Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 3-12. DOI: 10.1145/2649387.2649389  1
2014 Burleigh JG. Variation in rates of molecular evolution in plants and implications for estimating divergence times Plant Genome Diversity. 1: 103-111. DOI: 10.1007/978-3-7091-1130-7_7  1
2013 Wehe A, Burleigh JG, Eulenstein O. Efficient algorithms for knowledge-enhanced supertree and supermatrix phylogenetic problems. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 1432-41. PMID 24407302 DOI: 10.1109/TCBB.2012.162  1
2013 Chaudhary R, Burleigh JG, Fernández-Baca D. Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance. Algorithms For Molecular Biology : Amb. 8: 28. PMID 24180377 DOI: 10.1186/1748-7188-8-28  1
2013 Burleigh JG, Alphonse K, Alverson AJ, Bik HM, Blank C, Cirranello AL, Cui H, Daly M, Dietterich TG, Gasparich G, Irvine J, Julius M, Kaufman S, Law E, Liu J, et al. Next-generation phenomics for the Tree of Life. Plos Currents. 5. PMID 23827969 DOI: 10.1371/Currents.Tol.085C713Acafc8711B2Ff7010A4B03733  1
2013 Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, Rubio de Casas R. Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. American Journal of Botany. 100: 916-29. PMID 23629845 DOI: 10.3732/Ajb.1300044  1
2013 McDaniel SF, Atwood J, Burleigh JG. Recurrent evolution of dioecy in bryophytes. Evolution; International Journal of Organic Evolution. 67: 567-72. PMID 23356627 DOI: 10.1111/j.1558-5646.2012.01808.x  1
2013 Burleigh JG. Identifying the phylogenetic context of whole-genome duplications in plants Polyploidy and Genome Evolution. 77-92. DOI: 10.1007/978-3-642-31442-1_5  1
2012 Ramu A, Kahveci T, Burleigh JG. A scalable method for identifying frequent subtrees in sets of large phylogenetic trees. Bmc Bioinformatics. 13: 256. PMID 23033843 DOI: 10.1186/1471-2105-13-256  1
2012 Lin HT, Burleigh JG, Eulenstein O. Consensus properties for the deep coalescence problem and their application for scalable tree search. Bmc Bioinformatics. 13: S12. PMID 22759417 DOI: 10.1186/1471-2105-13-S10-S12  1
2012 Chaudhary R, Burleigh JG, Eulenstein O. Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence. Bmc Bioinformatics. 13: S11. PMID 22759416 DOI: 10.1186/1471-2105-13-S10-S11  1
2012 Ponciano JM, Burleigh JG, Braun EL, Taper ML. Assessing parameter identifiability in phylogenetic models using data cloning. Systematic Biology. 61: 955-72. PMID 22649181 DOI: 10.1093/Sysbio/Sys055  1
2012 Chaudhary R, Burleigh JG, Fernández-Baca D. Fast local search for unrooted Robinson-Foulds supertrees. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1004-13. PMID 22431553 DOI: 10.1109/Tcbb.2012.47  1
2012 Katz LA, Grant JR, Parfrey LW, Burleigh JG. Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life. Systematic Biology. 61: 653-60. PMID 22334342 DOI: 10.1093/Sysbio/Sys026  1
2012 Neubig KM, Whitten WM, Williams NH, Blanco MA, Endara L, Burleigh JG, Silvera K, Cushman JC, Chase MW. Generic recircumscriptions of Oncidiinae (Orchidaceae: Cymbidieae) based on maximum likelihood analysis of combined DNA datasets Botanical Journal of the Linnean Society. 168: 117-146. DOI: 10.1111/J.1095-8339.2011.01194.X  1
2012 Wehe A, Burleigh JG, Eulenstein O. Algorithms for knowledge-enhanced supertrees Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7292: 263-274. DOI: 10.1007/978-3-642-30191-9_25  1
2012 Górecki P, Burleigh JG, Eulenstein O. GTP supertrees from unrooted gene trees: Linear time algorithms for NNI based local searches Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7292: 102-114. DOI: 10.1007/978-3-642-30191-9_11  1
2011 Westbrook JW, Kitajima K, Burleigh JG, Kress WJ, Erickson DL, Wright SJ. What makes a leaf tough? Patterns of correlated evolution between leaf toughness traits and demographic rates among 197 shade-tolerant woody species in a neotropical forest. The American Naturalist. 177: 800-11. PMID 21597256 DOI: 10.1086/659963  1
2011 Burleigh JG, Bansal MS, Eulenstein O, Hartmann S, Wehe A, Vision TJ. Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees. Systematic Biology. 60: 117-25. PMID 21186249 DOI: 10.1093/Sysbio/Syq072  1
2011 Chaudhary R, Burleigh JG, Eulenstein O. Algorithms for rapid error correction for the gene duplication problem Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6674: 227-239. DOI: 10.1007/978-3-642-21260-4_23  1
2011 Lin HT, Burleigh JG, Eulenstein O. The deep coalescence consensus tree problem is Pareto on clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6674: 172-183. DOI: 10.1007/978-3-642-21260-4_19  1
2011 Soltis PS, Burleigh JG, Chanderbali AS, Yoo MJ, Soltis DE. Gene and Genome Duplications in Plants Evolution After Gene Duplication. 269-298. DOI: 10.1002/9780470619902.ch15  1
2010 Bansal MS, Burleigh JG, Eulenstein O, Fernández-Baca D. Robinson-Foulds supertrees. Algorithms For Molecular Biology : Amb. 5: 18. PMID 20181274 DOI: 10.1186/1748-7188-5-18  1
2010 Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE. Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proceedings of the National Academy of Sciences of the United States of America. 107: 4623-8. PMID 20176954 DOI: 10.1073/Pnas.0907801107  1
2010 Bansal MS, Burleigh JG, Eulenstein O. Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models. Bmc Bioinformatics. 11: S42. PMID 20122216 DOI: 10.1186/1471-2105-11-S1-S42  1
2010 Soltis DE, Moore MJ, Burleigh JG, Bell CD, Soltis PS. Assembling the angiosperm tree of life: Progress and future prospects Annals of the Missouri Botanical Garden. 97: 514-526. DOI: 10.3417/2009136  1
2010 Burleigh JG, Bansal MS, Eulenstein O, Vision TJ. Inferring species trees from gene duplication episodes 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 198-203. DOI: 10.1145/1854776.1854806  1
2010 Wehe A, Burleigh JG. Scaling the gene duplication problem towards the Tree of Life 2nd International Conference On Bioinformatics and Computational Biology 2010, Bicob 2010. 133-138.  1
2010 Homilius M, Burleigh JG, Eulenstein O. Triplet-supertrees constructed from minimum triplet presentations 2nd International Conference On Bioinformatics and Computational Biology 2010, Bicob 2010. 127-132.  1
2009 Burleigh JG, Bansal MS, Wehe A, Eulenstein O. Locating large-scale gene duplication events through reconciled trees: implications for identifying ancient polyploidy events in plants. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1071-83. PMID 19689214 DOI: 10.1089/Cmb.2009.0139  1
2009 Soltis DE, Burleigh JG. Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 106: 5455-6. PMID 19336584 DOI: 10.1073/Pnas.0901994106  1
2009 Burleigh JG, Hilu KW, Soltis DE. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms. Bmc Evolutionary Biology. 9: 61. PMID 19292928 DOI: 10.1186/1471-2148-9-61  1
2008 Hilu KW, Black C, Diouf D, Burleigh JG. Phylogenetic signal in matK vs. trnK: a case study in early diverging eudicots (angiosperms). Molecular Phylogenetics and Evolution. 48: 1120-30. PMID 18603450 DOI: 10.1016/j.ympev.2008.05.021  1
2008 Wehe A, Bansal MS, Burleigh JG, Eulenstein O. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. Bioinformatics (Oxford, England). 24: 1540-1. PMID 18474508 DOI: 10.1093/Bioinformatics/Btn230  1
2008 Chen D, Burleigh JG, Bansal MS, Fernández-Baca D. PhyloFinder: an intelligent search engine for phylogenetic tree databases. Bmc Evolutionary Biology. 8: 90. PMID 18366717 DOI: 10.1186/1471-2148-8-90  1
2008 Burleigh JG, Bansal MS, Wehe A, Eulenstein O. Locating multiple gene duplications through reconciled trees Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 273-284. DOI: 10.1007/978-3-540-78839-3_24  1
2007 Burleigh JG, Mathews S. Assessing systematic error in the inference of seed plant phylogeny International Journal of Plant Sciences. 168: 125-135. DOI: 10.1086/509588  1
2007 Burleigh JG, Mathews S. Assessing among-locus variation in the inference of seed plant phylogeny International Journal of Plant Sciences. 168: 111-124. DOI: 10.1086/509586  1
2007 Bansal MS, Burleigh JG, Eulenstein O, Wehe A. Heuristics for the gene-duplication problem: A ⊖(n) speed-up for the local search Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 238-252.  1
2006 Burleigh JG, Driskell AC, Sanderson MJ. Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets. Systematic Biology. 55: 426-40. PMID 16861207 DOI: 10.1080/10635150500541722  1
2005 Yan C, Burleigh JG, Eulenstein O. Identifying optimal incomplete phylogenetic data sets from sequence databases. Molecular Phylogenetics and Evolution. 35: 528-35. PMID 15878123 DOI: 10.1016/j.ympev.2005.02.008  1
2005 Ané C, Burleigh JG, McMahon MM, Sanderson MJ. Covarion structure in plastid genome evolution: a new statistical test. Molecular Biology and Evolution. 22: 914-24. PMID 15625184 DOI: 10.1093/Molbev/Msi076  1
2004 Burleigh JG, Mathews S. Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life. American Journal of Botany. 91: 1599-613. PMID 21652311 DOI: 10.3732/Ajb.91.10.1599  1
2003 Mathews S, Burleigh JG, Donoghue MJ. Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms. Molecular Biology and Evolution. 20: 1087-97. PMID 12777523 DOI: 10.1093/Molbev/Msg123  1
2003 Burleigh JG, Holtsford TP. Molecular systematics of the eastern North American Silene (Caryophyllaceae): Evidence from nuclear its and chloroplast trnL intron sequences Rhodora. 105: 76-90.  1
Show low-probability matches.