Andrew P. Martin - Publications

Affiliations: 
2006-2012 Ecology & Evolutionary Biology University of Colorado, Boulder, Boulder, CO, United States 

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Keepers K, Martin AP, Kane NC. The complete mitochondrial genome of the Warm Springs pupfish, Cyprinodon nevadensis pectoralis. Mitochondrial Dna. 1-2. PMID 26061336 DOI: 10.3109/19401736.2015.1025259  0.32
2015 Mara KR, Motta PJ, Martin AP, Hueter RE. Constructional morphology within the head of hammerhead sharks (sphyrnidae). Journal of Morphology. 276: 526-39. PMID 25684106 DOI: 10.1002/jmor.20362  0.52
2015 Gubili C, Robinson CEC, Cliff G, Wintner SP, de Sabata E, De Innocentiis SD, Canese S, Sims DW, Martin AP, Noble LR, Jones CS. DNA from historical and trophy samples provides insights into white shark population origins and genetic diversity Endangered Species Research. 27: 233-241. DOI: 10.3354/esr00665  0.52
2015 Love Stowell SM, Kennedy CM, Beals SC, Metcalf JL, Martin AP. The genetic legacy of more than a century of stocking trout: A case study in rocky mountain National park, Colorado, USA Canadian Journal of Fisheries and Aquatic Sciences. 72: 1565-1574. DOI: 10.1139/cjfas-2015-0009  0.52
2014 Keepers KG, Martin AP. Fitness landscape of sympatric pupfishes a useful tool for visualizing speciation. Molecular Ecology. 23: 2144-5. PMID 24766631 DOI: 10.1111/mec.12727  1
2014 Sackett LC, Seglund A, Guralnick RP, Mazzella MN, Wagner DM, Busch JD, Martin AP. Evidence for two subspecies of Gunnison's prairie dogs (Cynomys gunnisoni), and the general importance of the subspecies concept Biological Conservation. 174: 1-11. DOI: 10.1016/j.biocon.2014.03.010  1
2014 Paulson EL, Martin AP. Discerning invasion history in an ephemerally connected system: Landscape genetics of Procambarus clarkii in Ash Meadows, Nevada Biological Invasions. 16: 1719-1734. DOI: 10.1007/s10530-013-0621-x  1
2013 Sackett LC, Collinge SK, Martin AP. Do pathogens reduce genetic diversity of their hosts? Variable effects of sylvatic plague in black-tailed prairie dogs. Molecular Ecology. 22: 2441-55. PMID 23452304 DOI: 10.1111/mec.12270  1
2013 McIver LJ, McCormick JF, Martin A, Fondon JW, Garner HR. Population-scale analysis of human microsatellites reveals novel sources of exonic variation Gene. 516: 328-334. PMID 23274653 DOI: 10.1016/j.gene.2012.12.068  1
2013 Highnam G, Franck C, Martin A, Stephens C, Puthige A, Mittelman D. Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles. Nucleic Acids Research. 41: e32. PMID 23090981 DOI: 10.1093/nar/gks981  1
2013 Martin AP, Paulson E, Graham R. Geographically disjunct populations and widespread genets in an endangered halophilic plant, the Amargosa niterwort (Nitrophila mohavensis) Conservation Genetics. 14: 953-962. DOI: 10.1007/s10592-013-0486-7  1
2012 Metcalf JL, Love Stowell S, Kennedy CM, Rogers KB, McDonald D, Epp J, Keepers K, Cooper A, Austin JJ, Martin AP. Historical stocking data and 19th century DNA reveal human-induced changes to native diversity and distribution of cutthroat trout. Molecular Ecology. 21: 5194-207. PMID 22998121 DOI: 10.1111/mec.12028  1
2012 Jones RT, Bernhardt SA, Martin AP, Gage KL. Interactions among symbionts of Oropsylla spp. (Siphonoptera: Ceratophyllidae). Journal of Medical Entomology. 49: 492-6. PMID 22679855 DOI: 10.1603/ME11244  1
2012 Fondon JW, Martin A, Richards S, Gibbs RA, Mittelman D. Analysis of microsatellite variation in Drosophila melanogaster with population-scale genome sequencing Plos One. 7. PMID 22427938 DOI: 10.1371/journal.pone.0033036  1
2012 Sackett LC, Cross TB, Jones RT, Johnson WC, Ballare K, Ray C, Collinge SK, Martin AP. Connectivity of prairie dog colonies in an altered landscape: Inferences from analysis of microsatellite DNA variation Conservation Genetics. 13: 407-418. DOI: 10.1007/s10592-011-0293-y  1
2012 Martin AP, Echelle AA, Zegers G, Baker S, Keeler-Foster CL. Dramatic shifts in the gene pool of a managed population of an endangered species may be exacerbated by high genetic load Conservation Genetics. 13: 349-358. DOI: 10.1007/s10592-011-0289-7  1
2011 Robeson MS, King AJ, Freeman KR, Birky CW, Martin AP, Schmidt SK. Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally. Proceedings of the National Academy of Sciences of the United States of America. 108: 4406-10. PMID 21368117 DOI: 10.1073/pnas.1012678108  1
2011 Gubili C, Bilgin R, Kalkan E, Karhan SÜ, Jones CS, Sims DW, Kabasakal H, Martin AP, Noble LR. Antipodean white sharks on a Mediterranean walkabout? Historical dispersal leads to genetic discontinuity and an endangered anomalous population. Proceedings. Biological Sciences / the Royal Society. 278: 1679-86. PMID 21084352 DOI: 10.1098/rspb.2010.1856  1
2011 Brinkerhoff RJ, Martin AP, Jones RT, Collinge SK. Population genetic structure of the prairie dog flea and plague vector, Oropsylla hirsuta. Parasitology. 138: 71-9. PMID 20696095 DOI: 10.1017/S0031182010001046  1
2011 Lim DD, Motta P, Mara K, Martin AP. Corrigendum to " Phylogeny of hammerhead sharks (family Sphyrnidae) inferred from mitochondrial and nuclear genes" [Mol. Phylogenet. Evol. 55 (2010) 572-579] Molecular Phylogenetics and Evolution. 58: 414. DOI: 10.1016/j.ympev.2011.01.004  1
2010 Abdoullaye D, Acevedo I, Adebayo AA, Behrmann-Godel J, Benjamin RC, Bock DG, Born C, Brouat C, Caccone A, Cao LZ, Casado-Amezúa P, Catanéo J, Correa-Ramirez MM, Cristescu ME, ... ... Martin AP, et al. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2009-30 September 2009. Molecular Ecology Resources. 10: 232-6. PMID 21565018 DOI: 10.1111/j.1755-0998.2009.02796.x  1
2010 Lim DD, Motta P, Mara K, Martin AP. Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution. 55: 572-9. PMID 20138218 DOI: 10.1016/j.ympev.2010.01.037  1
2010 Jones RT, Knight R, Martin AP. Bacterial communities of disease vectors sampled across time, space, and species. The Isme Journal. 4: 223-31. PMID 19865184 DOI: 10.1038/ismej.2009.111  1
2010 Martin AP. The conservation genetics of Ash Meadows pupfish populations. I. The Warm Springs pupfish Cyprinodon nevadensis pectoralis Conservation Genetics. 11: 1847-1857. DOI: 10.1007/s10592-010-0077-9  1
2010 Eaton MJ, Meyers GL, Kolokotronis SO, Leslie MS, Martin AP, Amato G. Barcoding bushmeat: Molecular identification of Central African and South American harvested vertebrates Conservation Genetics. 11: 1389-1404. DOI: 10.1007/s10592-009-9967-0  1
2009 Robeson MS, Costello EK, Freeman KR, Whiting J, Adams B, Martin AP, Schmidt SK. Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers. Bmc Ecology. 9: 25. PMID 20003362 DOI: 10.1186/1472-6785-9-25  1
2009 Freeman KR, Martin AP, Karki D, Lynch RC, Mitter MS, Meyer AF, Longcore JE, Simmons DR, Schmidt SK. Evidence that chytrids dominate fungal communities in high-elevation soils. Proceedings of the National Academy of Sciences of the United States of America. 106: 18315-20. PMID 19826082 DOI: 10.1073/pnas.0907303106  1
2009 Eaton MJ, Martin A, Thorbjarnarson J, Amato G. Species-level diversification of African dwarf crocodiles (Genus Osteolaemus): a geographic and phylogenetic perspective. Molecular Phylogenetics and Evolution. 50: 496-506. PMID 19056500 DOI: 10.1016/j.ympev.2008.11.009  1
2009 Pritchard VL, Metcalf JL, Jones K, Martin AP, Cowley DE. Population structure and genetic management of Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis) Conservation Genetics. 10: 1209-1221. DOI: 10.1007/s10592-008-9652-8  1
2008 Mayhew LE, Swanner ED, Martin AP, Templeton AS. Phylogenetic Relationships and Functional Genes: Distribution of a Gene (mnxG) encoding a putative manganese-oxidizing enzyme in Bacillus species. Applied and Environmental Microbiology. 74: 7265-71. PMID 18849460 DOI: 10.1128/AEM.00540-08  1
2008 Nemergut DR, Robeson MS, Kysela RF, Martin AP, Schmidt SK, Knight R. Insights and inferences about integron evolution from genomic data. Bmc Genomics. 9: 261. PMID 18513439 DOI: 10.1186/1471-2164-9-261  1
2008 Metcalf JL, Siegle MR, Martin AP. Hybridization dynamics between Colorado's native cutthroat trout and introduced rainbow trout. The Journal of Heredity. 99: 149-56. PMID 18238784 DOI: 10.1093/jhered/esm118  1
2008 Bai Y, Kosoy M, Martin A, Ray C, Sheff K, Chalcraft L, Collinge SK. Characterization of Bartonella strains isolated from black-tailed prairie dogs (Cynomys ludovicianus). Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). 8: 1-5. PMID 18237261 DOI: 10.1089/vbz.2007.0136  1
2008 Jones RT, McCormick KF, Martin AP. Bacterial communities of Bartonella-positive fleas: diversity and community assembly patterns. Applied and Environmental Microbiology. 74: 1667-70. PMID 18203862 DOI: 10.1128/AEM.02090-07  1
2008 Porter TM, Schadt CW, Rizvi L, Martin AP, Schmidt SK, Scott-Denton L, Vilgalys R, Moncalvo JM. Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life. Molecular Phylogenetics and Evolution. 46: 635-44. PMID 18032071 DOI: 10.1016/j.ympev.2007.10.002  1
2007 Metcalf JL, Pritchard VL, Silvestri SM, Jenkins JB, Wood JS, Cowley DE, Evans RP, Shiozawa DK, Martin AP. Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populations. Molecular Ecology. 16: 4445-54. PMID 17727621 DOI: 10.1111/j.1365-294X.2007.03472.x  1
2007 Nemergut DR, Anderson SP, Cleveland CC, Martin AP, Miller AE, Seimon A, Schmidt SK. Microbial community succession in an unvegetated, recently deglaciated soil. Microbial Ecology. 53: 110-22. PMID 17186150 DOI: 10.1007/s00248-006-9144-7  1
2007 Pritchard VL, Jones K, Metcalf JL, Martin AP, Wilkinson P, Cowley DE. Characterization of tetranucleotide microsatellites for Rio Grande cutthroat trout and rainbow trout, and their cross-amplification in other cutthroat trout subspecies Molecular Ecology Notes. 7: 594-596. DOI: 10.1111/j.1471-8286.2007.01695.x  1
2006 Jones RT, Martin AP. Testing for differentiation of microbial communities using phylogenetic methods: accounting for uncertainty of phylogenetic inference and character state mapping. Microbial Ecology. 52: 408-17. PMID 16826322 DOI: 10.1007/s00248-006-9002-7  1
2006 DeChaine EG, Martin AP. Using coalescent simulations to test the impact of quaternary climate cycles on divergence in an alpine plant-insect association. Evolution; International Journal of Organic Evolution. 60: 1004-13. PMID 16817540 DOI: 10.1554/05-672.1  1
2006 Duncan KM, Martin AP, Bowen BW, DE Couet HG. Global phylogeography of the scalloped hammerhead shark (Sphyrna lewini). Molecular Ecology. 15: 2239-51. PMID 16780437 DOI: 10.1111/j.1365-294X.2006.02933.x  1
2006 Martin A. Advocacy dressed up as science: Response to Ramey et al. (2005) Animal Conservation. 9: 248-249. DOI: 10.1111/j.1469-1795.2006.00055.x  1
2006 Wilcox JL, Martin AP. The devil's in the details: Genetic and phenotypic divergence between artificial and native populations of the endangered pupfish (Cyprinodon diabolis) Animal Conservation. 9: 316-321. DOI: 10.1111/j.1469-1795.2006.00039.x  1
2006 Vignieri SN, Hallerman EM, Bergstrom BJ, Hafner DJ, Martin AP, Devers P, Grobler P, Hitt N. Mistaken view of taxonomic validity undermines conservation of an evolutionarily distinct mouse: A response to Ramey et al. (2005) Animal Conservation. 9: 237-243. DOI: 10.1111/j.1469-1795.2006.00038.x  1
2005 Dechaine EG, Martin AP. Marked genetic divergence among sky island populations of Sedum lanceolatum (Crassulaceae) in the Rocky Mountains. American Journal of Botany. 92: 477-86. PMID 21652425 DOI: 10.3732/ajb.92.3.477  1
2005 Jones RT, Martin AP, Mitchell AJ, Collinge SK, Ray C. Characterization of 14 polymorphic microsatellite markers for the black-tailed prairie dog (Cynomys ludovicianus) Molecular Ecology Notes. 5: 71-73. DOI: 10.1111/j.1471-8286.2004.00836.x  1
2005 DeChaine EG, Martin AP. Historical biogeography of two alpine butterflies in the Rocky Mountains: Broad-scale concordance and local-scale discordance Journal of Biogeography. 32: 1943-1956. DOI: 10.1111/j.1365-2699.2005.01356.x  1
2005 Collinge SK, Johnson WC, Ray C, Matchett R, Grensten J, Cully JF, Gage KL, Kosoy MY, Loye JE, Martin AP. Landscape structure and plague occurrence in black-tailed prairie dogs on grasslands of the western USA Landscape Ecology. 20: 941-955. DOI: 10.1007/s10980-005-4617-5  1
2005 Collinge SK, Johnson WC, Ray C, Matchett R, Grensten J, Cully JF, Gage KL, Kosoy MY, Loye JE, Martin AP. Testing the generality of a trophic-cascade model for plague Ecohealth. 2: 102-112. DOI: 10.1007/s10393-005-3877-5  1
2004 Davelos AL, Xiao K, Samac DA, Martin AP, Kinkel LL. Spatial variation in Streptomyces genetic composition and diversity in a prairie soil. Microbial Ecology. 48: 601-12. PMID 15696393 DOI: 10.1007/s00248-004-0031-9  1
2004 Martin AP, Costello EK, Meyer AF, Nemergut DR, Schmidt SK. The rate and pattern of cladogenesis in microbes. Evolution; International Journal of Organic Evolution. 58: 946-55. PMID 15212376 DOI: 10.1554/03-452  1
2004 DeChaine EG, Martini AP. Historic cycles of fragmentation and expansion in Parnassius smintheus (papilionidae) inferred using mitochondrial DNA. Evolution; International Journal of Organic Evolution. 58: 113-27. PMID 15058724  1
2004 Winchell CJ, Martin AP, Mallatt J. Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes. Molecular Phylogenetics and Evolution. 31: 214-24. PMID 15019621 DOI: 10.1016/j.ympev.2003.07.010  1
2004 Nemergut DR, Martin AP, Schmidt SK. Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution. Applied and Environmental Microbiology. 70: 1160-8. PMID 14766601 DOI: 10.1128/AEM.70.2.1160-1168.2004  1
2004 Meyer AF, Lipson DA, Martin AP, Schadt CW, Schmidt SK. Molecular and metabolic characterization of cold-tolerant alpine soil Pseudomonas sensu stricto. Applied and Environmental Microbiology. 70: 483-9. PMID 14711678 DOI: 10.1128/AEM.70.1.483-489.2004  1
2004 Martin AP, Wilcox JL. Evolutionary history of Ash Meadows pupfish (genus Cyprinodon) populations inferred using microsatellite markers Conservation Genetics. 5: 769-782. DOI: 10.1007/s10592-004-1978-2  1
2003 Schadt CW, Martin AP, Lipson DA, Schmidt SK. Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science (New York, N.Y.). 301: 1359-61. PMID 12958355 DOI: 10.1126/science.1086940  1
2002 Martin AP, Burg TM. Perils of paralogy: using HSP70 genes for inferring organismal phylogenies. Systematic Biology. 51: 570-87. PMID 12228000 DOI: 10.1080/10635150290069995  1
2002 Martin AP. Phylogenetic approaches for describing and comparing the diversity of microbial communities. Applied and Environmental Microbiology. 68: 3673-82. PMID 12147459 DOI: 10.1128/AEM.68.8.3673-3682.2002  1
2002 Martin AP, Pardini AT, Noble LR, Jones CS. Conservation of a dinucleotide simple sequence repeat locus in sharks. Molecular Phylogenetics and Evolution. 23: 205-13. PMID 12069551 DOI: 10.1016/S1055-7903(02)00001-5  1
2002 Burg TM, Wilcox JL, Martin A. Isolation and characterization of polymorphic microsatellite loci in pupfish (genus Cyprinodon) Conservation Genetics. 3: 197-204. DOI: 10.1023/A:1015229529868  1
2001 Martin A. The phylogenetic placement of Chondrichthyes: Inferences from analysis of multiple genes and implications for comparative studies Genetica. 111: 349-357. PMID 11841179 DOI: 10.1023/A:1013747532647  1
2001 Pardini AT, Jones CS, Noble LR, Kreiser B, Malcolm H, Bruce BD, Stevens JD, Cliff G, Scholl MC, Francis M, Duffy CA, Martin AP. Sex-biased dispersal of great white sharks. Nature. 412: 139-40. PMID 11449258 DOI: 10.1038/35084125  1
2001 Martin A. Is tetralogy true? Lack of support for the "one-to-four rule" [2] Molecular Biology and Evolution. 18: 89-93. PMID 11141196  1
2000 Martin AP. Choosing among alternative trees of multigene families Molecular Phylogenetics and Evolution. 16: 430-439. PMID 10991795 DOI: 10.1006/mpev.2000.0818  1
2000 Martin AP, Bermingham E. Regional endemism and cryptic species revealed by molecular and morphological analysis of a widespread species of Neotropical catfish Proceedings of the Royal Society B: Biological Sciences. 267: 1135-1141. PMID 10885519  1
1999 Martin AP. Substitution rates of organelle and nuclear genes in sharks: Implicating metabolic rate (again) Molecular Biology and Evolution. 16: 996-1002. PMID 10406116  1
1999 Martin AP. Increasing genomic complexity by gene duplication and the origin of vertebrates American Naturalist. 154: 111-128. DOI: 10.1086/303231  1
1998 Martin AP, Bermingham E. Systematics and Evolution of Lower Central American Cichlids Inferred from Analysis of Cytochrome b Gene Sequences Molecular Phylogenetics and Evolution. 9: 192-203. PMID 9562979 DOI: 10.1006/mpev.1997.0461  1
1998 Lovejoy NR, Bermingham E, Martin AP. Marine incursion into South America [4] Nature. 396: 421-422. DOI: 10.1038/24757  1
1996 Simon C, Nigro L, Sullivan J, Holsinger K, Martin A, Grapputo A, Franke A, McIntosh C. Large differences in substitutional pattern and evolutionary rate of 12S ribosomal RNA genes Molecular Biology and Evolution. 13: 923-932. PMID 8752001 DOI: 10.1093/oxfordjournals.molbev.a025660  1
1995 Martin AP. Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA Molecular Biology and Evolution. 12: 1124-1131. PMID 8524045  1
1995 Martin AP. Mitochondrial DNA sequence evolution in sharks: Rates, patterns, and phylogenetic inferences Molecular Biology and Evolution. 12: 1114-1123. PMID 8524044  1
1993 Martin AP, Palumbi SR. Body size, metabolic rate, generation time, and the molecular clock. Proceedings of the National Academy of Sciences of the United States of America. 90: 4087-91. PMID 8483925  1
1993 Martin AP, Palumbi SR. Protein evolution in different cellular environments: cytochrome b in sharks and mammals. Molecular Biology and Evolution. 10: 873-91. PMID 8355604  1
1993 Martin A. Hammerhead shark origins [8] Nature. 364: 494.  1
1992 Martin AP, Naylor GJ, Palumbi SR. Rates of mitochondrial DNA evolution in sharks are slow compared with mammals. Nature. 357: 153-5. PMID 1579163 DOI: 10.1038/357153a0  1
1992 Martin AP, Humphreys R, Palumbi SR. Population genetic structure of the armorhead, Pseudopentaceros wheeleri, in the North Pacific Ocean: application of the polymerase chain reaction to fisheries problems Canadian Journal of Fisheries and Aquatic Sciences. 49: 2386-2391.  1
1990 Martin AP, Kessing BD, Palumbi SR. Accuracy of estimating genetic distance between species from short sequences of mitochondrial DNA. Molecular Biology and Evolution. 7: 485-8. PMID 2263198  1
1989 Simon C, Martin A. Periodical cicadas (I: Reply) Nature. 341: 288-289.  1
1988 Martin AP, Simon C. Anomalous distribution of nuclear and mitochondrial DNA markers in periodical cicadas Nature. 336: 237-239.  1
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