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Ryan N. Gutenkunst, Ph.D. - Publications

Affiliations: 
2008 Cornell University, Ithaca, NY, United States 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Blischak PD, Sajan M, Barker MS, Gutenkunst RN. Demographic History Inference and the Polyploid Continuum. Genetics. PMID 37279657 DOI: 10.1093/genetics/iyad107  0.615
2022 Gower G, Ragsdale AP, Bisschop G, Gutenkunst RN, Hartfield M, Noskova E, Schiffels S, Struck TJ, Kelleher J, Thornton KR. Demes: a standard format for demographic models. Genetics. PMID 36173327 DOI: 10.1093/genetics/iyac131  0.31
2021 Blischak PD, Barker MS, Gutenkunst RN. Chromosome-scale inference of hybrid speciation and admixture with convolutional neural networks. Molecular Ecology Resources. PMID 33682305 DOI: 10.1111/1755-0998.13355  0.583
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, ... ... Gutenkunst RN, et al. A community-maintained standard library of population genetic models. Elife. 9. PMID 32573438 DOI: 10.7554/Elife.54967  0.369
2020 Blischak PD, Barker MS, Gutenkunst RN. Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data. Molecular Biology and Evolution. PMID 32068861 DOI: 10.1093/Molbev/Msaa042  0.65
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, ... ... Gutenkunst RN, et al. Author response: A community-maintained standard library of population genetic models Elife. DOI: 10.7554/Elife.54967.Sa2  0.306
2017 Hsieh P, Hallmark B, Watkins J, Karafet TM, Osipova LP, Gutenkunst RN, Hammer MF. Exome Sequencing Provides Evidence of Polygenic Adaptation to a Fat-Rich Animal Diet in Indigenous Siberian Populations. Molecular Biology and Evolution. PMID 28962010 DOI: 10.1093/Molbev/Msx226  0.332
2017 Ragsdale AP, Gutenkunst RN. Inferring Demographic History Using Two-Locus Statistics. Genetics. PMID 28413158 DOI: 10.1534/Genetics.117.201251  0.318
2017 Qi X, An H, Ragsdale A, Hall TE, Gutenkunst RN, Pires JC, Barker MS. Genomic inferences of domestication events are corroborated by written records in Brassica rapa. Molecular Ecology. PMID 28371014 DOI: 10.1111/Mec.14131  0.581
2016 Mannakee BK, Gutenkunst RN. Selection on Network Dynamics Drives Differential Rates of Protein Domain Evolution. Plos Genetics. 12: e1006132. PMID 27380265 DOI: 10.1371/Journal.Pgen.1006132  0.32
2016 Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Research. 26: 717.1. PMID 27197244 DOI: 10.1101/Gr.206524.116  0.368
2016 Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Research. PMID 26888264 DOI: 10.1101/Gr.196634.115  0.32
2016 Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN. Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection. Genome Research. PMID 26888263 DOI: 10.1101/Gr.192971.115  0.332
2016 Edwards T, Tollis M, Hsieh P, Gutenkunst RN, Liu Z, Kusumi K, Culver M, Murphy RW. Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses. Ecology and Evolution. 6: 379-96. PMID 26843925 DOI: 10.1002/Ece3.1865  0.315
2015 Coffman AJ, Hsieh P, Gravel S, Gutenkunst RN. Computationally efficient composite likelihood statistics for demographic inference. Molecular Biology and Evolution. PMID 26545922 DOI: 10.1093/Molbev/Msv255  0.386
2014 Robinson JD, Coffman AJ, Hickerson MJ, Gutenkunst RN. Sampling strategies for frequency spectrum-based population genomic inference. Bmc Evolutionary Biology. 14: 254. PMID 25471595 DOI: 10.1186/S12862-014-0254-4  0.381
2013 Ma X, Kelley JL, Eilertson K, Musharoff S, Degenhardt JD, Martins AL, Vinar T, Kosiol C, Siepel A, Gutenkunst RN, Bustamante CD. Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii). Plos One. 8: e77175. PMID 24194868 DOI: 10.1371/Journal.Pone.0077175  0.317
2011 Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA, Bustamante CD. Demographic history and rare allele sharing among human populations. Proceedings of the National Academy of Sciences of the United States of America. 108: 11983-8. PMID 21730125 DOI: 10.1073/Pnas.1019276108  0.33
2011 Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. Guidelines for visualizing and annotating rule-based models. Molecular Biosystems. 7: 2779-95. PMID 21647530 DOI: 10.1039/C1Mb05077J  0.382
2010 Colvin J, Monine MI, Gutenkunst RN, Hlavacek WS, Von Hoff DD, Posner RG. RuleMonkey: software for stochastic simulation of rule-based models. Bmc Bioinformatics. 11: 404. PMID 20673321 DOI: 10.1186/1471-2105-11-404  0.332
2010 Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. Diffusion Approximations for Demographic Inference: DaDi Nature Precedings. 1-1. DOI: 10.1038/Npre.2010.4594.1  0.416
2009 Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. Plos Genetics. 5: e1000695. PMID 19851460 DOI: 10.1371/Journal.Pgen.1000695  0.394
2009 Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, Indap A, Bustamante CD, Clark AG. Darwinian and demographic forces affecting human protein coding genes. Genome Research. 19: 838-49. PMID 19279335 DOI: 10.1101/Gr.088336.108  0.31
2009 Auton A, Bryc K, Boyko AR, Lohmueller KE, Novembre J, Reynolds A, Indap A, Wright MH, Degenhardt JD, Gutenkunst RN, King KS, Nelson MR, Bustamante CD. Global distribution of genomic diversity underscores rich complex history of continental human populations Genome Research. 19: 795-803. PMID 19218534 DOI: 10.1101/Gr.088898.108  0.307
2008 Casey FP, Waterfall JJ, Gutenkunst RN, Myers CR, Sethna JP. Variational method for estimating the rate of convergence of Markov-chain Monte Carlo algorithms. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 046704. PMID 18999558 DOI: 10.1103/Physreve.78.046704  0.683
2008 Daniels BC, Chen YJ, Sethna JP, Gutenkunst RN, Myers CR. Sloppiness, robustness, and evolvability in systems biology. Current Opinion in Biotechnology. 19: 389-95. PMID 18620054 DOI: 10.1016/J.Copbio.2008.06.008  0.688
2007 Gutenkunst RN, Casey FP, Waterfall JJ, Myers CR, Sethna JP. Extracting falsifiable predictions from sloppy models. Annals of the New York Academy of Sciences. 1115: 203-11. PMID 17925353 DOI: 10.1196/Annals.1407.003  0.728
2007 Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, Sethna JP. Universally sloppy parameter sensitivities in systems biology models. Plos Computational Biology. 3: 1871-78. PMID 17922568 DOI: 10.1371/Journal.Pcbi.0030189  0.739
2007 Casey FP, Baird D, Feng Q, Gutenkunst RN, Waterfall JJ, Myers CR, Brown KS, Cerione RA, Sethna JP. Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model. Iet Systems Biology. 1: 190-202. PMID 17591178 DOI: 10.1049/Iet-Syb:20060065  0.703
2007 Gutenkunst R, Newlands N, Lutcavage M, Edelstein-Keshet L. Inferring resource distributions from Atlantic bluefin tuna movements: an analysis based on net displacement and length of track. Journal of Theoretical Biology. 245: 243-57. PMID 17140603 DOI: 10.1016/J.Jtbi.2006.10.014  0.321
2007 Myers CR, Gutenkunst RN, Sethna JP. Python unleashed on systems biology Computing in Science and Engineering. 9: 34-37. DOI: 10.1109/Mcse.2007.60  0.661
2006 Waterfall JJ, Casey FP, Gutenkunst RN, Brown KS, Myers CR, Brouwer PW, Elser V, Sethna JP. Sloppy-model universality class and the Vandermonde matrix. Physical Review Letters. 97: 150601. PMID 17155311 DOI: 10.1103/Physrevlett.97.150601  0.732
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