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Jesse N. Weber, Ph.D. - Publications

Affiliations: 
2007-2012 Biology, Organismic and Evolutionary Harvard University, Cambridge, MA, United States 
 2012-2015 Integrative Biology University of Texas at Austin, Austin, Texas, U.S.A. 
 2015-2017 University of Montana, Missoula, MT 
 2018-2020 Biological Sciences University of Alaska Anchorage 
 2020- Integrative Biology University of Wisconsin, Madison, Madison, WI 
Area:
Ecological genomics
Website:
adaptationmatters.wix.com/home
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2025 Hu J, Weber JN, Fuess LE, Steinel NC, Bolnick DI, Wang M. A spectral framework to map QTLs affecting joint differential networks of gene co-expression. Plos Computational Biology. 21: e1012953. PMID 40245036 DOI: 10.1371/journal.pcbi.1012953  0.76
2025 Malinsky M, Talbi M, Zhou C, Maurer N, Sacco S, Shapiro B, Peichel CL, Seehausen O, Salzburger W, Weber JN, Bolnick DI, Green RE, Durbin R. Hi-reComb: constructing recombination maps from bulk gamete Hi-C sequencing. Biorxiv : the Preprint Server For Biology. PMID 40161681 DOI: 10.1101/2025.03.06.641907  0.521
2024 Bolnick DI, Barrett RDH, Choi E, Eckert L, Hendry AP, Kerns EV, Lind ÅJ, Milligan-McClellan K, Peichel CL, Sasser K, Thornton AR, Wolf C, Steinel NC, Weber JN. Destabilized host-parasite dynamics in newly founded populations. Biorxiv : the Preprint Server For Biology. PMID 38979317 DOI: 10.1101/2024.06.24.600494  0.548
2024 Hendry AP, Barrett RDH, Bell AM, Bell MA, Bolnick DI, Gotanda KM, Haines GE, Lind ÅJ, Paccard M, Peichel CL, Peterson CR, Poore HA, Massengill RL, Milligan-McClellan K, Steinel NC, ... ... Weber JN, et al. Designing eco-evolutionary experiments for restoration projects: Opportunities and constraints revealed during stickleback introductions. Ecology and Evolution. 14: e11503. PMID 38932947 DOI: 10.1002/ece3.11503  0.496
2024 Hu J, Weber JN, Fuess LE, Steinel NC, Bolnick DI, Wang M. A spectral framework to map QTLs affecting joint differential networks of gene co-expression. Biorxiv : the Preprint Server For Biology. PMID 38585912 DOI: 10.1101/2024.03.29.587398  0.761
2023 Weber JN, Kojima W, Boisseau RP, Niimi T, Morita S, Shigenobu S, Gotoh H, Araya K, Lin CP, Thomas-Bulle C, Allen CE, Tong W, Lavine LC, Swanson BO, Emlen DJ. Evolution of horn length and lifting strength in the Japanese rhinoceros beetle Trypoxylus dichotomus. Current Biology : Cb. PMID 37734374 DOI: 10.1016/j.cub.2023.08.066  0.684
2023 Morita S, Shibata TF, Nishiyama T, Kobayashi Y, Yamaguchi K, Toga K, Ohde T, Gotoh H, Kojima T, Weber JN, Salvemini M, Bino T, Mase M, Nakata M, Mori T, et al. The draft genome sequence of the Japanese rhinoceros beetle Trypoxylus dichotomus septentrionalis towards an understanding of horn formation. Scientific Reports. 13: 8735. PMID 37253792 DOI: 10.1038/s41598-023-35246-w  0.626
2022 Weber JN, Steinel NC, Peng F, Shim KC, Lohman BK, Fuess LE, Subramanian S, Lisle SP, Bolnick DI. Evolutionary gain and loss of a pathological immune response to parasitism. Science (New York, N.Y.). 377: 1206-1211. PMID 36074841 DOI: 10.1126/science.abo3411  0.762
2022 Bedford NL, Weber JN, Tong W, Baier F, Kam A, Greenberg RA, Hoekstra HE. Interspecific variation in cooperative burrowing behavior by mice. Evolution Letters. 6: 330-340. PMID 35937472 DOI: 10.1002/evl3.293  0.702
2021 Fuess LE, Weber JN, den Haan S, Steinel NC, Shim KC, Bolnick DI. Between-population differences in constitutive and infection-induced gene expression in threespine stickleback. Molecular Ecology. PMID 34582586 DOI: 10.1111/mec.16197  0.773
2021 Fuess LE, den Haan S, Ling F, Weber JN, Steinel NC, Bolnick DI. Immune Gene Expression Covaries with Gut Microbiome Composition in Stickleback. Mbio. 12. PMID 33947750 DOI: 10.1128/mBio.00145-21  0.752
2020 Ling F, Steinel N, Weber J, Ma L, Smith C, Correa D, Zhu B, Bolnick D, Wang G. The gut microbiota response to helminth infection depends on host sex and genotype. The Isme Journal. PMID 32005978 DOI: 10.1038/S41396-020-0589-3  0.581
2019 Weber JN, Tong W. Jumping gene gave fish a freshwater start. Science (New York, N.Y.). 364: 831-832. PMID 31147508 DOI: 10.1126/Science.Aax7936  0.541
2019 Smith CC, Weber JN, Mikheyev AS, Roces F, Bollazzi M, Kellner K, Seal JN, Mueller UG. Landscape genomics of an obligate mutualism: Concordant and discordant population structures between the leafcutter ant Atta texana and its two main fungal symbiont types. Molecular Ecology. PMID 31141257 DOI: 10.1111/Mec.15111  0.421
2019 Vasconcellos MM, Colli GR, Weber JN, Ortiz EM, Rodrigues MT, Cannatella DC. Isolation by instability: Historical climate change shapes population structure and genomic divergence of treefrogs in the Neotropical Cerrado savanna. Molecular Ecology. PMID 30742734 DOI: 10.1111/Mec.15045  0.383
2017 Lohman BK, Steinel NC, Weber JN, Bolnick DI. Gene Expression Contributes to the Recent Evolution of Host Resistance in a Model Host Parasite System. Frontiers in Immunology. 8: 1071. PMID 28955327 DOI: 10.3389/Fimmu.2017.01071  0.618
2017 Stuart YE, Veen T, Weber JN, Hanson D, Ravinet M, Lohman BK, Thompson CJ, Tasneem T, Doggett A, Izen R, Ahmed N, Barrett RDH, Hendry AP, Peichel CL, Bolnick DI. Contrasting effects of environment and genetics generate a continuum of parallel evolution. Nature Ecology & Evolution. 1: 158. PMID 28812631 DOI: 10.1038/S41559-017-0158  0.624
2017 Weber JN, Steinel NC, Shim KC, Bolnick DI. Recent evolution of extreme cestode growth suppression by a vertebrate host. Proceedings of the National Academy of Sciences of the United States of America. PMID 28588142 DOI: 10.1073/Pnas.1620095114  0.585
2017 Weber JN, Kalbe M, Shim KC, Erin NI, Steinel NC, Ma L, Bolnick DI. Resist Globally, Infect Locally: A Transcontinental Test of Adaptation by Stickleback and Their Tapeworm Parasite. The American Naturalist. 189: 43-57. PMID 28035893 DOI: 10.1086/689597  0.57
2016 Weber JN, Bradburd GS, Stuart YE, Stutz WE, Bolnick DI. Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback. Evolution; International Journal of Organic Evolution. PMID 27804120 DOI: 10.1111/Evo.13110  0.767
2016 Lohman BK, Weber JN, Bolnick DI. Evaluation of TagSeq, a reliable low-cost alternative for RNAseq. Molecular Ecology Resources. PMID 27037501 DOI: 10.1111/1755-0998.12529  0.57
2014 Puritz JB, Matz MV, Toonen RJ, Weber JN, Bolnick DI, Bird CE. Demystifying the RAD fad. Molecular Ecology. 23: 5937-42. PMID 25319241 DOI: 10.1111/Mec.12965  0.524
2013 Kowalko JE, Rohner N, Rompani SB, Peterson BK, Linden TA, Yoshizawa M, Kay EH, Weber J, Hoekstra HE, Jeffery WR, Borowsky R, Tabin CJ. Loss of schooling behavior in cavefish through sight-dependent and sight-independent mechanisms. Current Biology : Cb. 23: 1874-83. PMID 24035545 DOI: 10.1016/J.Cub.2013.07.056  0.726
2013 Weber JN, Peterson BK, Hoekstra HE. Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice. Nature. 493: 402-5. PMID 23325221 DOI: 10.1038/Nature11816  0.758
2012 Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE. Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. Plos One. 7: e37135. PMID 22675423 DOI: 10.1371/Journal.Pone.0037135  0.728
2010 Weber JN, Peters MB, Tsyusko OV, Linnen CR, Hagen C, Schable NA, Tuberville TD, McKee AM, Lance SL, Jones KL, Fisher HS, Dewey MJ, Hoekstra HE, Glenn TC. Five Hundred Microsatellite Loci for Peromyscus. Conservation Genetics (Print). 11: 1243-1246. PMID 20563244 DOI: 10.1007/S10592-009-9941-X  0.758
2009 Weber JN, Hoekstra HE. The evolution of burrowing behaviour in deer mice (genus Peromyscus) Animal Behaviour. 77: 603-609. DOI: 10.1016/J.Anbehav.2008.10.031  0.636
2008 Steiner CC, Weber JN, Hoekstra HE. Correction: Adaptive Variation in Beach Mice Produced by Two Interacting Pigmentation Genes Plos Biology. 6: e36. DOI: 10.1371/Journal.Pbio.0060036  0.752
2007 Steiner CC, Weber JN, Hoekstra HE. Adaptive variation in beach mice produced by two interacting pigmentation genes. Plos Biology. 5: e219. PMID 17696646 DOI: 10.1371/Journal.Pbio.0050219  0.777
2005 Allen DL, Weber JN, Sycuro LK, Leinwand LA. Myocyte enhancer factor-2 and serum response factor binding elements regulate fast Myosin heavy chain transcription in vivo. The Journal of Biological Chemistry. 280: 17126-34. PMID 15728583 DOI: 10.1074/Jbc.M501207200  0.465
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