John E. McCormack, Ph.D. - Publications

Affiliations: 
2007 University of California, Los Angeles, Los Angeles, CA 

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Friis G, Fandos G, Zellmer AJ, McCormack JE, Faircloth BC, Milá B. Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird. Molecular Ecology. 27: 5137-5153. PMID 30451354 DOI: 10.1111/mec.14946  0.44
2016 Zarza E, Faircloth BC, Tsai WL, Bryson RW, Klicka J, McCormack JE. Hidden histories of gene flow in highland birds revealed with genomic markers. Molecular Ecology. PMID 27543758 DOI: 10.1111/mec.13813  0.8
2016 Bryson RW, Faircloth BC, Tsai WLE, McCormack JE, Klicka J. Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae) Auk. 133: 451-458. DOI: 10.1642/AUK-16-26.1  0.8
2015 Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC. Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics. Molecular Phylogenetics and Evolution. PMID 26518740 DOI: 10.1016/j.ympev.2015.10.027  0.8
2015 McCormack JE, Tsai WL, Faircloth BC. Sequence capture of ultraconserved elements from bird museum specimens. Molecular Ecology Resources. PMID 26391430 DOI: 10.1111/1755-0998.12466  0.8
2015 Toews DPL, Campagna L, Taylor SA, Balakrishnan CN, Baldassarre DT, Deane-Coe PE, Harvey MG, Hooper DM, Irwin DE, Judy CD, Mason NA, McCormack JE, McCracken KG, Oliveros CH, Safran RJ, et al. Genomic approaches to understanding population divergence and speciation in birds Auk. 133: 13-30. DOI: 10.1642/AUK-15-51.1  0.8
2015 McCormack JE, Maley JM. Interpreting negative results with taxonomic and conservation implications: Another look at the distinctness of coastal California Gnatcatchers Auk. 132: 380-388. DOI: 10.1642/AUK-14-184.1  0.8
2015 Kaplan M, Heimes P, McCormack J. Contributions to the morphology of Plectrohyla mykter (Anura: Hylidae), with comments on some controversial characters and the diagnosis of this species | Contribuciones a la morfología de Plectrohyla mykter Adler (Anura: Hylidae), con comentarios sobre algunos caracteres controversiales y la diagnosis de esta especie Caldasia. 37: 211-220. DOI: 10.15446/caldasia/v37n1.50807  0.8
2015 Alvarez S, Salter JF, Mccormack JE, Milá B. Speciation in mountain refugia: Phylogeography and demographic history of the pine siskin and black-capped siskin complex Journal of Avian Biology. DOI: 10.1111/jav.00814  0.8
2015 Ribeiro RD, Mccormack JE, Álvarez HG, Carrasco L, Grether GF, Mena-Olmedo P, Sedano R, Smith TB, Karubian J. Loss of sexual dimorphism is associated with loss of lekking behavior in the green manakin Xenopipo holochora Journal of Avian Biology. 46: 307-314. DOI: 10.1111/jav.00545  0.8
2014 Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, ... ... McCormack J, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/science.1254449  0.8
2014 Smith BT, McCormack JE, Cuervo AM, Hickerson MJ, Aleixo A, Cadena CD, Pérez-Emán J, Burney CW, Xie X, Harvey MG, Faircloth BC, Glenn TC, Derryberry EP, Prejean J, Fields S, et al. The drivers of tropical speciation. Nature. 515: 406-9. PMID 25209666 DOI: 10.1038/nature13687  0.8
2014 Gowen FC, Maley JM, Cicero C, Peterson AT, Faircloth BC, Warr TC, McCormack JE. Speciation in Western Scrub-Jays, Haldane's rule, and genetic clines in secondary contact. Bmc Evolutionary Biology. 14: 135. PMID 24938753 DOI: 10.1186/1471-2148-14-135  0.8
2013 McCormack JE, Faircloth BC. Next-generation phylogenetics takes root. Molecular Ecology. 22: 19-20. PMID 23383410 DOI: 10.1111/mec.12050  0.8
2013 McCormack JE, Harvey MG, Faircloth BC, Crawford NG, Glenn TC, Brumfield RT. A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing. Plos One. 8: e54848. PMID 23382987 DOI: 10.1371/journal.pone.0054848  0.8
2013 McCormack JE, Hird SM, Zellmer AJ, Carstens BC, Brumfield RT. Applications of next-generation sequencing to phylogeography and phylogenetics. Molecular Phylogenetics and Evolution. 66: 526-38. PMID 22197804 DOI: 10.1016/j.ympev.2011.12.007  0.8
2013 McCormack JE, Venkatraman MX. A distinctive genetic footprint of ancient hybridization Auk. 130: 469-475. DOI: 10.1525/auk.2013.12208  0.8
2013 McCormack JE, Maley JM, Hird SM, Derryberry EP, Graves GR, Brumfield RT. Corrigendum to "Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences" [Mol. Phylogenet. Evol. 62 (2012) 397-406] Molecular Phylogenetics and Evolution. 66: 440. DOI: 10.1016/j.ympev.2012.09.009  0.8
2012 Crawford NG, Faircloth BC, McCormack JE, Brumfield RT, Winker K, Glenn TC. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biology Letters. 8: 783-6. PMID 22593086 DOI: 10.1098/rsbl.2012.0331  0.8
2012 St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, ... ... McCormack JE, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/gb-2012-13-1-415  0.8
2012 Faircloth BC, McCormack JE, Crawford NG, Harvey MG, Brumfield RT, Glenn TC. Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales. Systematic Biology. 61: 717-26. PMID 22232343 DOI: 10.1093/sysbio/sys004  0.8
2012 McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis. Genome Research. 22: 746-54. PMID 22207614 DOI: 10.1101/gr.125864.111  0.8
2012 McCormack JE, Maley JM, Hird SM, Derryberry EP, Graves GR, Brumfield RT. Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences. Molecular Phylogenetics and Evolution. 62: 397-406. PMID 22063264 DOI: 10.1016/j.ympev.2011.10.012  0.8
2012 Berg EC, Aldredge RA, Peterson AT, McCormack JE. New phylogenetic information suggests both an increase and at least one loss of cooperative breeding during the evolutionary history of Aphelocoma jays Evolutionary Ecology. 26: 43-54. DOI: 10.1007/s10682-011-9492-8  0.8
2011 Arteaga MC, McCormack JE, Eguiarte LE, Medellín RA. Genetic admixture in multidimensional environmental space: asymmetrical niche similarity promotes gene flow in armadillos (Dasypus novemcinctus). Evolution; International Journal of Organic Evolution. 65: 2470-80. PMID 21884050 DOI: 10.1111/j.1558-5646.2011.01329.x  0.8
2011 McCormack JE, Heled J, Delaney KS, Peterson AT, Knowles LL. Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays. Evolution; International Journal of Organic Evolution. 65: 184-202. PMID 20681982 DOI: 10.1111/j.1558-5646.2010.01097.x  0.8
2010 McCormack JE, Zellmer AJ, Knowles LL. Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation? Insights from tests with niche models. Evolution; International Journal of Organic Evolution. 64: 1231-44. PMID 19922442 DOI: 10.1111/j.1558-5646.2009.00900.x  0.8
2010 McCormack JE, Berg EC. Small-scale divergence in egg color along an elevation gradient in the mexican jay (aphelocoma ultramarina): A condition-dependent response? Auk. 127: 35-43. DOI: 10.1525/auk.2009.09043  0.8
2009 McCormack JE, Huang H, Knowles LL. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design. Systematic Biology. 58: 501-8. PMID 20525604 DOI: 10.1093/sysbio/syp045  0.8
2009 Pease KM, Freedman AH, Pollinger JP, McCormack JE, Buermann W, Rodzen J, Banks J, Meredith E, Bleich VC, Schaefer RJ, Jones K, Wayne RK. Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation. Molecular Ecology. 18: 1848-62. PMID 19302356 DOI: 10.1111/j.1365-294X.2009.04112.x  0.8
2009 Berg EC, McCormack JE, Smith TB. Test of an adaptive hypothesis for egg speckling along an elevational gradient in a population of mexican jays aphelocoma ultramarina Journal of Avian Biology. 40: 448-452. DOI: 10.1111/j.1600-048X.2008.04632.x  0.8
2008 McCormack JE, Bowen BS, Smith TB. Integrating paleoecology and genetics of bird populations in two sky island archipelagos. Bmc Biology. 6: 28. PMID 18588695 DOI: 10.1186/1741-7007-6-28  0.8
2008 McCormack JE, Smith TB. Niche expansion leads to small-scale adaptive divergence along an elevation gradient in a medium-sized passerine bird. Proceedings. Biological Sciences / the Royal Society. 275: 2155-64. PMID 18544512 DOI: 10.1098/rspb.2008.0470  0.8
2008 McCormack JE, Peterson AT, Bonaccorso E, Smith TB. Speciation in the highlands of Mexico: genetic and phenotypic divergence in the Mexican jay (Aphelocoma ultramarina). Molecular Ecology. 17: 2505-21. PMID 18430143 DOI: 10.1111/j.1365-294X.2008.03776.x  0.8
2007 Milá B, McCormack JE, Castañeda G, Wayne RK, Smith TB. Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco. Proceedings. Biological Sciences / the Royal Society. 274: 2653-60. PMID 17725978 DOI: 10.1098/rspb.2007.0852  0.8
2007 McCormack JE, Jablonski PG, Brown JL. Producer-scrounger roles and joining based on dominance in a free-living group of Mexican jays (Aphelocoma ultramarina) Behaviour. 144: 967-982. DOI: 10.1163/156853907781492717  0.8
2007 McCormack JE, Castañeda-Guayasamin G, Levandoski G. Sierra Santa Rosa: An oasis of bird diversity in arid Northern Mexico Ornitologia Neotropical. 18: 369-377.  0.8
2005 McCormack JE, Guayasamin GC, Milá B, Pineda FH. Slate-throated redstarts (Myioborus miniatus) breeding in Maderas del Carmen, Coahuila, Mexico Southwestern Naturalist. 50: 501-503. DOI: 10.1894/0038-4909(2005)050[0501:SRMMBI]2.0.CO;2  0.8
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