Colleen Cavanaugh - Publications

Affiliations: 
OEB Harvard University, Cambridge, MA, United States 

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM. Correction: Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons. Plos One. 14: e0220347. PMID 31335887 DOI: 10.1371/journal.pone.0220347  0.4
2019 Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM. Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons. Plos One. 14: e0217804. PMID 31206549 DOI: 10.1371/journal.pone.0217804  0.4
2015 Boller AJ, Thomas PJ, Cavanaugh CM, Scott KM. Isotopic discrimination and kinetic parameters of RubisCO from the marine bloom-forming diatom, Skeletonema costatum. Geobiology. 13: 33-43. PMID 25302659 DOI: 10.1111/gbi.12112  1
2014 Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM. The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis. Bmc Genomics. 15: 924. PMID 25342549 DOI: 10.1186/1471-2164-15-924  1
2014 Belzer C, Gerber GK, Roeselers G, Delaney M, DuBois A, Liu Q, Belavusava V, Yeliseyev V, Houseman A, Onderdonk A, Cavanaugh C, Bry L. Dynamics of the microbiota in response to host infection. Plos One. 9: e95534. PMID 25014551 DOI: 10.1371/journal.pone.0095534  1
2014 Fontanez KM, Cavanaugh CM. Evidence for horizontal transmission from multilocus phylogeny of deep-sea mussel (Mytilidae) symbionts. Environmental Microbiology. 16: 3608-21. PMID 24428587 DOI: 10.1111/1462-2920.12379  1
2014 Liao L, Wankel SD, Wu M, Cavanaugh CM, Girguis PR. Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbioses Ridgeia piscesae. Molecular Ecology. 23: 1544-57. PMID 24237389 DOI: 10.1111/mec.12460  1
2013 Lau E, Fisher MC, Steudler PA, Cavanaugh CM. The methanol dehydrogenase gene, mxaF, as a functional and phylogenetic marker for proteobacterial methanotrophs in natural environments. Plos One. 8: e56993. PMID 23451130 DOI: 10.1371/journal.pone.0056993  1
2013 Fontanez KM, Cavanaugh CM. Phylogenetic relationships of hydrothermal vent mussels (Bathymodiolinae) and their symbionts Marine Ecology Progress Series. 474: 147-154. DOI: 10.3354/meps10086  1
2013 Cavanaugh CM, McKiness ZP, Newton ILG, Stewart FJ. Marine chemosynthetic symbioses The Prokaryotes: Prokaryotic Biology and Symbiotic Associations. 579-607. DOI: 10.1007/978-3-642-30194-0_21  1
2011 Stewart FJ, Dmytrenko O, Delong EF, Cavanaugh CM. Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum. Frontiers in Microbiology. 2: 134. PMID 21738524 DOI: 10.3389/fmicb.2011.00134  1
2011 Bates AE, Harmer TL, Roeselers G, Cavanaugh CM. Phylogenetic characterization of episymbiotic bacteria hosted by a hydrothermal vent limpet (lepetodrilidae, vetigastropoda). The Biological Bulletin. 220: 118-27. PMID 21551448  0.4
2011 Roeselers G, Mittge EK, Stephens WZ, Parichy DM, Cavanaugh CM, Guillemin K, Rawls JF. Evidence for a core gut microbiota in the zebrafish. The Isme Journal. 5: 1595-608. PMID 21472014 DOI: 10.1038/ismej.2011.38  1
2011 Auchtung TA, Shyndriayeva G, Cavanaugh CM. 16S rRNA phylogenetic analysis and quantification of Korarchaeota indigenous to the hot springs of Kamchatka, Russia. Extremophiles : Life Under Extreme Conditions. 15: 105-16. PMID 21153671 DOI: 10.1007/s00792-010-0340-5  1
2011 Guss AM, Roeselers G, Newton IL, Young CR, Klepac-Ceraj V, Lory S, Cavanaugh CM. Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis. The Isme Journal. 5: 20-9. PMID 20631810 DOI: 10.1038/ismej.2010.88  1
2011 Stewart FJ, Cavanaugh CM. Amplicon Pyrosequencing Analysis of Endosymbiont Population Structure Handbook of Molecular Microbial Ecology Ii: Metagenomics in Different Habitats. 415-421. DOI: 10.1002/9781118010549.ch40  1
2010 Roeselers G, Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, ... ... Cavanaugh CM, et al. Complete genome sequence of Candidatus Ruthia magnifica. Standards in Genomic Sciences. 3: 163-73. PMID 21304746 DOI: 10.4056/sigs.1103048  1
2009 Stewart FJ, Baik AH, Cavanaugh CM. Genetic subdivision of chemosynthetic endosymbionts of Solemya velum along the Southern New England coast. Applied and Environmental Microbiology. 75: 6005-7. PMID 19633116 DOI: 10.1128/AEM.00689-09  1
2009 Stewart FJ, Cavanaugh CM. Pyrosequencing analysis of endosymbiont population structure: co-occurrence of divergent symbiont lineages in a single vesicomyid host clam. Environmental Microbiology. 11: 2136-47. PMID 19397674 DOI: 10.1111/j.1462-2920.2009.01933.x  1
2009 Stewart FJ, Young CR, Cavanaugh CM. Evidence for homologous recombination in intracellular chemosynthetic clam symbionts. Molecular Biology and Evolution. 26: 1391-404. PMID 19289597 DOI: 10.1093/molbev/msp049  1
2009 Lachmayr KL, Kerkhof LJ, Dirienzo AG, Cavanaugh CM, Ford TE. Quantifying nonspecific TEM beta-lactamase (blaTEM) genes in a wastewater stream. Applied and Environmental Microbiology. 75: 203-11. PMID 18997031 DOI: 10.1128/AEM.01254-08  1
2008 Newton IL, Girguis PR, Cavanaugh CM. Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts. Bmc Genomics. 9: 585. PMID 19055818 DOI: 10.1186/1471-2164-9-585  1
2008 Harmer TL, Rotjan RD, Nussbaumer AD, Bright M, Ng AW, DeChaine EG, Cavanaugh CM. Free-living tube worm endosymbionts found at deep-sea vents. Applied and Environmental Microbiology. 74: 3895-8. PMID 18408062 DOI: 10.1128/AEM.02470-07  1
2008 Stewart FJ, Young CR, Cavanaugh CM. Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis. Molecular Biology and Evolution. 25: 673-87. PMID 18192696 DOI: 10.1093/molbev/msn010  1
2007 Stewart FJ, Cavanaugh CM. Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria. Journal of Molecular Evolution. 65: 44-67. PMID 17568983 DOI: 10.1007/s00239-006-0235-3  1
2007 Lau E, Ahmad A, Steudler PA, Cavanaugh CM. Molecular characterization of methanotrophic communities in forest soils that consume atmospheric methane. Fems Microbiology Ecology. 60: 490-500. PMID 17391332 DOI: 10.1111/j.1574-6941.2007.00308.x  1
2007 Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, ... Cavanaugh CM, et al. The Calyptogena magnifica chemoautotrophic symbiont genome. Science (New York, N.Y.). 315: 998-1000. PMID 17303757 DOI: 10.1126/science.1138438  1
2006 Stewart FJ, Cavanaugh CM. Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)--model systems for studies of symbiont-host adaptation. Antonie Van Leeuwenhoek. 90: 343-60. PMID 17028934 DOI: 10.1007/s10482-006-9086-6  1
2006 DeChaine EG, Bates AE, Shank TM, Cavanaugh CM. Off-axis symbiosis found: Characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents. Environmental Microbiology. 8: 1902-12. PMID 17014490 DOI: 10.1111/j.1462-2920.2005.01113.x  1
2006 Duperron S, Bergin C, Zielinski F, Blazejak A, Pernthaler A, McKiness ZP, DeChaine E, Cavanaugh CM, Dubilier N. A dual symbiosis shared by two mussel species, Bathymodiolus azoricus and Bathymodiolus puteoserpentis (Bivalvia: Mytilidae), from hydrothermal vents along the northern Mid-Atlantic Ridge. Environmental Microbiology. 8: 1441-7. PMID 16872406 DOI: 10.1111/j.1462-2920.2006.01038.x  1
2006 Auchtung TA, Takacs-Vesbach CD, Cavanaugh CM. 16S rRNA phylogenetic investigation of the candidate division "Korarchaeota". Applied and Environmental Microbiology. 72: 5077-82. PMID 16820509 DOI: 10.1128/AEM.00052-06  1
2006 DeChaine EG, Cavanaugh CM. Symbioses of methanotrophs and deep-sea mussels (Mytilidae: Bathymodiolinae). Progress in Molecular and Subcellular Biology. 41: 227-49. PMID 16623396  1
2006 Stewart FJ, Cavanaugh CM. Symbiosis of thioautotrophic bacteria with Riftia pachyptila. Progress in Molecular and Subcellular Biology. 41: 197-225. PMID 16623395  1
2006 Tomitani A, Knoll AH, Cavanaugh CM, Ohno T. The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives. Proceedings of the National Academy of Sciences of the United States of America. 103: 5442-7. PMID 16569695 DOI: 10.1073/pnas.0600999103  1
2005 Stewart FJ, Newton IL, Cavanaugh CM. Chemosynthetic endosymbioses: adaptations to oxic-anoxic interfaces. Trends in Microbiology. 13: 439-48. PMID 16054816 DOI: 10.1016/j.tim.2005.07.007  1
2004 Schwedock J, Harmer TL, Scott KM, Hektor HJ, Seitz AP, Fontana MC, Distel DL, Cavanaugh CM. Characterization and expression of genes from the RubisCO gene cluster of the chemoautotrophic symbiont of Solemya velum: cbbLSQO. Archives of Microbiology. 182: 18-29. PMID 15316720 DOI: 10.1007/s00203-004-0689-x  0.32
2004 Mix LJ, Harmer TL, Cavanaugh CM. Sequence of the core antenna domain from the anoxygenic phototroph Heliophilum fasciatum: implications for diversity of reaction center type I. Current Microbiology. 48: 438-40. PMID 15170240 DOI: 10.1007/s00284-003-4221-3  0.32
2002 Bertilsson S, Cavanaugh CM, Polz MF. Sequencing-independent method to generate oligonucleotide probes targeting a variable region in bacterial 16S rRNA by PCR with detachable primers. Applied and Environmental Microbiology. 68: 6077-86. PMID 12450831  0.96
2002 Wirsen CO, Sievert SM, Cavanaugh CM, Molyneaux SJ, Ahmad A, Taylor LT, DeLong EF, Taylor CD. Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur. Applied and Environmental Microbiology. 68: 316-25. PMID 11772641 DOI: 10.1128/AEM.68.1.316-325.2002  1
2001 Tay ST, Hemond FH, Krumholz LR, Cavanaugh CM, Polz MF. Population Dynamics of Two Toluene Degrading Bacterial Species in a Contaminated Stream. Microbial Ecology. 41: 124-131. PMID 12032617 DOI: 10.1007/s002480000089  0.96
2001 Gulledge J, Ahmad A, Steudler PA, Pomerantz WJ, Cavanaugh CM. Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria. Applied and Environmental Microbiology. 67: 4726-33. PMID 11571178 DOI: 10.1128/AEM.67.10.4726-4733.2001  1
2001 Van Dover CL, Humphris SE, Fornari D, Cavanaugh CM, Collier R, Goffredi SK, Hashimoto J, Lilley MD, Reysenbach AL, Shank TM, Von Damm KL, Banta A, Gallant RM, Gotz D, Green D, et al. Biogeography and ecological setting of Indian Ocean hydrothermal vents. Science (New York, N.Y.). 294: 818-23. PMID 11557843 DOI: 10.1126/science.1064574  1
1999 Polz MF, Harbison C, Cavanaugh CM. Diversity and heterogeneity of epibiotic bacterial communities on the marine nematode Eubostrichus dianae. Applied and Environmental Microbiology. 65: 4271-5. PMID 10473452  0.96
1999 Tay ST, Hemond HF, Polz MF, Cavanaugh CM, Krumholz LR. Importance of Xanthobacter autotrophicus in toluene biodegradation within a contaminated stream. Systematic and Applied Microbiology. 22: 113-8. PMID 10188284 DOI: 10.1016/S0723-2020(99)80034-4  1
1998 Polz MF, Cavanaugh CM. Bias in template-to-product ratios in multitemplate PCR. Applied and Environmental Microbiology. 64: 3724-30. PMID 9758791  0.96
1998 Tay ST, Hemond HF, Polz MF, Cavanaugh CM, Dejesus I, Krumholz LR. Two new Mycobacterium strains and their role in toluene degradation in a contaminated stream. Applied and Environmental Microbiology. 64: 1715-20. PMID 9572941  1
1998 Robinson JJ, Stein JL, Cavanaugh CM. Cloning and sequencing of a form II ribulose-1,5-biphosphate carboxylase/oxygenase from the bacterial symbiont of the hydrothermal vent tubeworm Riftia pachyptila. Journal of Bacteriology. 180: 1596-9. PMID 9515935  1
1997 Polz MF, Cavanaugh CM. A simple method for quantification of uncultured microorganisms in the environment based on in vitro transcription of 16S rRNA. Applied and Environmental Microbiology. 63: 1028-33. PMID 9055419  0.96
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