| Year |
Citation |
Score |
| 2023 |
Chen AY, Brooks BR, Damjanovic A. Ion channel selectivity through ion-modulated changes of selectivity filter p values. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220343120. PMID 37339196 DOI: 10.1073/pnas.2220343120 |
0.728 |
|
| 2022 |
Chen AY, Lee J, Damjanovic A, Brooks BR. Protein p Prediction by Tree-Based Machine Learning. Journal of Chemical Theory and Computation. 18: 2673-2686. PMID 35289611 DOI: 10.1021/acs.jctc.1c01257 |
0.702 |
|
| 2021 |
Chen AY, Brooks BR, Damjanovic A. Determinants of conductance of a bacterial voltage gated sodium channel. Biophysical Journal. PMID 34214541 DOI: 10.1016/j.bpj.2021.06.013 |
0.733 |
|
| 2019 |
Damjanovic A, Chen AY, Rosenberg RL, Roe DR, Wu X, Brooks BR. Protonation state of the selectivity filter of bacterial voltage-gated sodium channels is modulated by ions. Proteins. PMID 31589792 DOI: 10.1002/Prot.25831 |
0.743 |
|
| 2019 |
Damjanovic A, Chen AY, Rosenberg RL, Roe D, Brooks BR. Constant pH Study of a Sodium Channel Biophysical Journal. 116: 387a. DOI: 10.1016/J.Bpj.2018.11.2098 |
0.5 |
|
| 2018 |
Damjanovic A, Miller BT, Okur A, Brooks BR. Reservoir pH replica exchange. The Journal of Chemical Physics. 149: 072321. PMID 30134701 DOI: 10.1063/1.5027413 |
0.52 |
|
| 2016 |
Lee J, Tofoleanu F, Pickard FC, König G, Huang J, Damjanović A, Baek M, Seok C, Brooks BR. Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge. Journal of Computer-Aided Molecular Design. PMID 27677749 DOI: 10.1007/S10822-016-9968-2 |
0.5 |
|
| 2015 |
Lee J, Miller BT, Damjanović A, Brooks BR. Enhancing Constant-pH Simulation in Explicit Solvent with a Two-Dimensional Replica Exchange Method. Journal of Chemical Theory and Computation. 11: 2560-2574. PMID 26575555 DOI: 10.1021/Ct501101F |
0.513 |
|
| 2015 |
Damjanovic A, Miller BT, Okur A, Garcia-Moreno B, Brooks BR. Constant pH Simulations with the Double Reservoir pH Replica Exchange Biophysical Journal. 108: 47a. DOI: 10.1016/J.Bpj.2014.11.290 |
0.525 |
|
| 2012 |
Wu X, Damjanovic A, Brooks BR. Efficient and Unbiased Sampling of Biomolecular Systems in the Canonical Ensemble: A Review of Self-Guided Langevin Dynamics. Advances in Chemical Physics. 150: 255-326. PMID 23913991 DOI: 10.1002/9781118197714.Ch6 |
0.493 |
|
| 2011 |
Damjanovic A, Wu X, Garcia-Moreno B, Brooks BR. Conformational Relaxation and Water Penetration Triggered by the Ionization of Internal Groups in Proteins Biophysical Journal. 100: 309a. DOI: 10.1016/J.Bpj.2010.12.1890 |
0.526 |
|
| 2008 |
Harms MJ, Schlessman JL, Chimenti MS, Sue GR, Damjanović A, García-Moreno B. A buried lysine that titrates with a normal pKa: role of conformational flexibility at the protein-water interface as a determinant of pKa values. Protein Science : a Publication of the Protein Society. 17: 833-45. PMID 18369193 DOI: 10.1110/Ps.073397708 |
0.354 |
|
| 2006 |
Janosi L, Kosztin I, Damjanović A. Theoretical prediction of spectral and optical properties of bacteriochlorophylls in thermally disordered LH2 antenna complexes. The Journal of Chemical Physics. 125: 014903. PMID 16863329 DOI: 10.1063/1.2210481 |
0.307 |
|
| 2004 |
Sener MK, Park S, Lu D, Damjanovic A, Ritz T, Fromme P, Schulten K. Excitation migration in trimeric cyanobacterial photosystem I. The Journal of Chemical Physics. 120: 11183-95. PMID 15268148 DOI: 10.1063/1.1739400 |
0.74 |
|
| 2003 |
Yang M, Damjanović A, Vaswani HM, Fleming GR. Energy transfer in photosystem I of cyanobacteria Synechococcus elongatus: model study with structure-based semi-empirical Hamiltonian and experimental spectral density. Biophysical Journal. 85: 140-58. PMID 12829471 DOI: 10.1016/S0006-3495(03)74461-0 |
0.368 |
|
| 2002 |
Ritz T, Damjanović A, Schulten K. The quantum physics of photosynthesis. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 3: 243-8. PMID 12503169 DOI: 10.1002/1439-7641(20020315)3:3<243::Aid-Cphc243>3.0.Co;2-Y |
0.66 |
|
| 2002 |
Hu X, Ritz T, Damjanović A, Autenrieth F, Schulten K. Photosynthetic apparatus of purple bacteria. Quarterly Reviews of Biophysics. 35: 1-62. PMID 11997980 DOI: 10.1017/S0033583501003754 |
0.689 |
|
| 2002 |
Damjanović A, Kosztin I, Kleinekathöfer U, Schulten K. Excitons in a photosynthetic light-harvesting system: a combined molecular dynamics, quantum chemistry, and polaron model study. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 031919. PMID 11909121 DOI: 10.1103/Physreve.65.031919 |
0.496 |
|
| 2002 |
Damjanović A, Vaswani HM, Fromme P, Fleming GR. Chlorophyll excitations in photosystem I of Synechococcus elongatus Journal of Physical Chemistry B. 106: 10251-10262. DOI: 10.1021/Jp020963F |
0.386 |
|
| 2000 |
Ritz T, Damjanović A, Schulten K, Zhang JP, Koyama Y. Efficient light harvesting through carotenoids. Photosynthesis Research. 66: 125-44. PMID 16228415 DOI: 10.1023/A:1010750332320 |
0.685 |
|
| 2000 |
Damjanović A, Ritz T, Schulten K. Excitation transfer in the peridinin-chlorophyll-protein of Amphidinium carterae. Biophysical Journal. 79: 1695-705. PMID 11023878 DOI: 10.1016/S0006-3495(00)76422-8 |
0.72 |
|
| 1999 |
Damjanović A, Ritz T, Schulten K. Energy transfer between carotenoids and bacteriochlorophylls in light-harvesting complex II of purple bacteria Physical Review E. 59: 3293-3311. DOI: 10.1103/Physreve.59.3293 |
0.719 |
|
| 1999 |
Manoj N, Srinivas VR, Surolia A, Vijayan M, Suguna K, Ravishankar R, Schwarzenbacher R, Zeth K, Diederichs, Kostner GM, Gries A, Laggner P, Prassl R, Madhusudan, Akamine P, et al. Contributory presentations/posters Journal of Biosciences. 24: 33-198. DOI: 10.1007/Bf02989373 |
0.626 |
|
| 1998 |
Hu X, Damjanović A, Ritz T, Schulten K. Architecture and mechanism of the light-harvesting apparatus of purple bacteria. Proceedings of the National Academy of Sciences of the United States of America. 95: 5935-41. PMID 9600895 DOI: 10.1073/Pnas.95.11.5935 |
0.694 |
|
| 1998 |
Ritz T, Hu X, Damjanović A, Schulten K. Excitons and excitation transfer in the photosynthetic unit of purple bacteria Journal of Luminescence. 310-321. DOI: 10.1016/S0022-2313(97)00286-X |
0.679 |
|
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