| Year |
Citation |
Score |
| 2020 |
Bastian FB, Roux J, Niknejad A, Comte A, Fonseca Costa SS, de Farias TM, Moretti S, Parmentier G, de Laval VR, Rosikiewicz M, Wollbrett J, Echchiki A, Escoriza A, Gharib WH, Gonzales-Porta M, et al. The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Research. PMID 33037820 DOI: 10.1093/nar/gkaa793 |
0.643 |
|
| 2020 |
Selmoni OM, Maitre D, Roux J, Wilkins LGE, Marques da Cunha L, Vermeirssen ELM, Knörr S, Robinson-Rechavi M, Wedekind C. Correction to: Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae). Bmc Genomics. 21: 371. PMID 32434468 DOI: 10.1186/s12864-020-06782-w |
0.585 |
|
| 2020 |
Blake LE, Roux J, Hernando-Herraez I, Banovich N, Garcia Perez R, Hsiao CJ, Eres I, Cuevas C, Marques-Bonet T, Gilad Y. A comparison of gene expression and DNA methylation patterns across tissues and species. Genome Research. PMID 31953346 DOI: 10.1101/Gr.254904.119 |
0.429 |
|
| 2019 |
Selmoni OM, Maitre D, Roux J, Wilkins LGE, Marques da Cunha L, Vermeirssen ELM, Knörr S, Robinson-Rechavi M, Wedekind C. Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae). Bmc Genomics. 20: 583. PMID 31307399 DOI: 10.1186/S12864-019-5955-Z |
0.629 |
|
| 2019 |
Seppey M, Ioannidis P, Emerson BC, Pitteloud C, Robinson-Rechavi M, Roux J, Escalona HE, McKenna DD, Misof B, Shin S, Zhou X, Waterhouse RM, Alvarez N. Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles. Genome Biology. 20: 98. PMID 31101123 DOI: 10.1186/S13059-019-1704-5 |
0.596 |
|
| 2019 |
Klein F, Mitrovic M, Roux J, Engdahl C, von Muenchow L, Alberti-Servera L, Fehling HJ, Pelczar P, Rolink A, Tsapogas P. The transcription factor Duxbl mediates elimination of pre-T cells that fail β-selection. The Journal of Experimental Medicine. PMID 30765463 DOI: 10.1084/jem.20181444 |
0.302 |
|
| 2018 |
Pavlovic BJ, Blake LE, Roux J, Chavarria C, Gilad Y. A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues. Scientific Reports. 8: 15312. PMID 30333510 DOI: 10.1038/s41598-018-33478-9 |
0.359 |
|
| 2017 |
Maitre D, Selmoni OM, Uppal A, Marques da Cunha L, Wilkins LGE, Roux J, Mobley KB, Castro I, Knörr S, Robinson-Rechavi M, Wedekind C. Sex differentiation in grayling (Salmonidae) goes through an all-male stage and is delayed in genetic males who instead grow faster. Scientific Reports. 7: 15024. PMID 29101375 DOI: 10.1038/S41598-017-14905-9 |
0.558 |
|
| 2017 |
Križanovic K, Echchiki A, Roux J, Šikic M. Evaluation of tools for long read RNA-seq splice-aware alignment. Bioinformatics (Oxford, England). PMID 29069314 DOI: 10.1093/bioinformatics/btx668 |
0.321 |
|
| 2017 |
Roux J, Liu J, Robinson-Rechavi M. Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates. Molecular Biology and Evolution. PMID 28981708 DOI: 10.1093/Molbev/Msx199 |
0.69 |
|
| 2017 |
Komljenovic A, Roux J, Wollbrett J, Team B, Bastian FB, Robinson-Rechavi M. Accessing and manipulating curated and annotated gene expression data in R with BgeeDB F1000research. 6. DOI: 10.7490/F1000Research.1114851.1 |
0.624 |
|
| 2017 |
Echchiki A, Roux J, Robinson-Rechavi M. Using new long reads technologies to improve the study of alternative splicing F1000research. 6. DOI: 10.7490/F1000Research.1114848.1 |
0.506 |
|
| 2017 |
Bastian FB, Echchiki A, Komljenovic A, Moretti S, Niknejad A, Laval VRd, Roux J, Wollbrett J, Robinson-Rechavi M, Team B. Bgee database: creating knowledge from gene expression F1000research. 6. DOI: 10.7490/F1000Research.1114845.1 |
0.647 |
|
| 2016 |
Komljenovic A, Roux J, Wollbrett J, Robinson-Rechavi M, Bastian FB. BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests. F1000research. 5: 2748. PMID 30467516 DOI: 10.12688/F1000Research.9973.1 |
0.674 |
|
| 2016 |
Komljenovic A, Roux J, Robinson-Rechavi M, Bastian FB. BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests F1000research. 5: 2748. DOI: 10.12688/f1000research.9973.1 |
0.416 |
|
| 2015 |
Roux J, Rosikiewicz M, Robinson-Rechavi M. What to compare and how: Comparative transcriptomics for Evo-Devo. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 324: 372-82. PMID 25864439 DOI: 10.1002/Jez.B.22618 |
0.643 |
|
| 2014 |
Banovich NE, Lan X, McVicker G, van de Geijn B, Degner JF, Blischak JD, Roux J, Pritchard JK, Gilad Y. Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels. Plos Genetics. 10: e1004663. PMID 25233095 DOI: 10.1371/Journal.Pgen.1004663 |
0.333 |
|
| 2014 |
Roux J, Privman E, Moretti S, Daub JT, Robinson-Rechavi M, Keller L. Patterns of positive selection in seven ant genomes. Molecular Biology and Evolution. 31: 1661-85. PMID 24782441 DOI: 10.1093/Molbev/Msu141 |
0.713 |
|
| 2013 |
Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Research. 23: 1235-47. PMID 23636946 DOI: 10.1101/Gr.155408.113 |
0.671 |
|
| 2012 |
Piasecka B, Kutalik Z, Roux J, Bergmann S, Robinson-Rechavi M. Comparative modular analysis of gene expression in vertebrate organs. Bmc Genomics. 13: 124. PMID 22458817 DOI: 10.1186/1471-2164-13-124 |
0.649 |
|
| 2012 |
Roux J, Gonzàlez-Porta M, Robinson-Rechavi M. Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs. Nucleic Acids Research. 40: 5890-900. PMID 22457063 DOI: 10.1093/Nar/Gks279 |
0.554 |
|
| 2012 |
Niknejad A, Comte A, Parmentier G, Roux J, Bastian FB, Robinson-Rechavi M. vHOG, a multispecies vertebrate ontology of homologous organs groups. Bioinformatics (Oxford, England). 28: 1017-20. PMID 22285560 DOI: 10.1093/Bioinformatics/Bts048 |
0.596 |
|
| 2012 |
Gadau J, Helmkampf M, Nygaard S, Roux J, Simola DF, Smith CR, Suen G, Wurm Y, Smith CD. The genomic impact of 100 million years of social evolution in seven ant species. Trends in Genetics : Tig. 28: 14-21. PMID 21982512 DOI: 10.1016/J.Tig.2011.08.005 |
0.35 |
|
| 2011 |
Roux J, Robinson-Rechavi M. Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication. Genome Research. 21: 357-63. PMID 21173032 DOI: 10.1101/Gr.113803.110 |
0.653 |
|
| 2010 |
Comte A, Roux J, Robinson-Rechavi M. Molecular signaling in zebrafish development and the vertebrate phylotypic period. Evolution & Development. 12: 144-56. PMID 20433455 DOI: 10.1111/J.1525-142X.2010.00400.X |
0.609 |
|
| 2010 |
Roux J, Robinson-Rechavi M. An ontology to clarify homology-related concepts. Trends in Genetics : Tig. 26: 99-102. PMID 20116127 DOI: 10.1016/J.Tig.2009.12.012 |
0.542 |
|
| 2010 |
Bastian F, Comte A, Gharib W, Porta MG, Jarosz Y, Laurenczy B, Moretti S, Niknejad A, Parmentier G, Piasecka B, Rosikiewicz M, Roux J, Sanjeev K, Robinson-Rechavi M. Bgee: a database for the study of gene expression evolution F1000research. 1. DOI: 10.7490/F1000Research.1092219.1 |
0.678 |
|
| 2009 |
Cruz F, Roux J, Robinson-Rechavi M. The expansion of amino-acid repeats is not associated to adaptive evolution in mammalian genes. Bmc Genomics. 10: 619. PMID 20021652 DOI: 10.1186/1471-2164-10-619 |
0.608 |
|
| 2008 |
Roux J, Robinson-Rechavi M. Developmental constraints on vertebrate genome evolution. Plos Genetics. 4: e1000311. PMID 19096706 DOI: 10.1371/Journal.Pgen.1000311 |
0.67 |
|
| 2008 |
Bastian F, Parmentier G, Roux J, Moretti S, Laudet V, Robinson-Rechavi M. Bgee: Integrating and comparing heterogeneous transcriptome data among species Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5109: 124-131. DOI: 10.1007/978-3-540-69828-9_12 |
0.507 |
|
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