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Anne J. Shiu, Ph.D. - Publications

Affiliations: 
2010 Mathematics University of California, Berkeley, Berkeley, CA, United States 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Gross E, Harrington H, Meshkat N, Shiu A. Joining and decomposing reaction networks. Journal of Mathematical Biology. PMID 32123964 DOI: 10.1007/S00285-020-01477-Y  0.39
2020 Perez ARd, Matusevich LF, Shiu A. Neural codes and the factor complex Advances in Applied Mathematics. 114: 101977. DOI: 10.1016/J.Aam.2019.101977  0.62
2019 Curto C, Gross E, Jeffries J, Morrison K, Rosen Z, Shiu A, Youngs N. Algebraic signatures of convex and non-convex codes. Journal of Pure and Applied Algebra. 223: 3919-3940. PMID 31534273 DOI: 10.1016/J.Jpaa.2018.12.012  0.362
2019 Obatake N, Shiu A, Tang X, Torres A. Oscillations and bistability in a model of ERK regulation. Journal of Mathematical Biology. PMID 31346693 DOI: 10.1007/S00285-019-01402-Y  0.377
2019 Tyler J, Shiu A, Walton J. Revisiting a synthetic intracellular regulatory network that exhibits oscillations. Journal of Mathematical Biology. PMID 30929046 DOI: 10.1007/S00285-019-01346-3  0.35
2019 Conradi C, Mincheva M, Shiu A. Emergence of Oscillations in a Mixed-Mechanism Phosphorylation System. Bulletin of Mathematical Biology. PMID 30834485 DOI: 10.1007/S11538-019-00580-6  0.362
2019 Dickenstein A, Millán MP, Shiu A, Tang X. Multistationarity in Structured Reaction Networks. Bulletin of Mathematical Biology. PMID 30788691 DOI: 10.1007/S11538-019-00572-6  0.404
2019 Shiu A, Wolff Td. Nondegenerate multistationarity in small reaction networks Discrete and Continuous Dynamical Systems-Series B. 24: 2683-2700. DOI: 10.3934/Dcdsb.2018270  0.414
2019 Chen A, Frick F, Shiu A. Neural Codes, Decidability, and a New Local Obstruction to Convexity Siam Journal On Applied Algebra and Geometry. 3: 44-66. DOI: 10.1137/18M1186563  0.336
2018 Conradi C, Shiu A. Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions. Biophysical Journal. 114: 507-515. PMID 29414696 DOI: 10.1016/J.Bpj.2017.11.3787  0.364
2018 Garcia R, Puente LDG, Kruse R, Liu J, Miyata D, Petersen E, Phillipson K, Shiu A. Gröbner bases of neural ideals International Journal of Algebra and Computation. 28: 553-571. DOI: 10.1142/S0218196718500261  0.306
2017 Eithun M, Shiu A. An All-Encompassing Global Convergence Result for Processive Multisite Phosphorylation Systems. Mathematical Biosciences. PMID 28600136 DOI: 10.1016/J.Mbs.2017.05.006  0.361
2017 Curto C, Gross E, Jeffries J, Morrison K, Omar M, Rosen Z, Shiu A, Youngs N. What Makes a Neural Code Convex Siam Journal On Applied Algebra and Geometry. 1: 222-238. DOI: 10.1137/16M1073170  0.339
2017 Joshi B, Shiu A. Which Small Reaction Networks Are Multistationary Siam Journal On Applied Dynamical Systems. 16: 802-833. DOI: 10.1137/16M1069705  0.397
2017 Lienkaemper C, Shiu A, Woodstock Z. Obstructions to convexity in neural codes Advances in Applied Mathematics. 85: 31-59. DOI: 10.1016/J.Aam.2016.11.006  0.325
2016 Félix B, Shiu A, Woodstock Z. Analyzing multistationarity in chemical reaction networks using the determinant optimization method Applied Mathematics and Computation. 287: 60-73. DOI: 10.1016/J.Amc.2016.04.030  0.377
2016 Müller S, Feliu E, Regensburger G, Conradi C, Shiu A, Dickenstein A. Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry Foundations of Computational Mathematics. 16: 69-97. DOI: 10.1007/S10208-014-9239-3  0.383
2015 Conradi C, Shiu A. A global convergence result for processive multisite phosphorylation systems. Bulletin of Mathematical Biology. 77: 126-55. PMID 25549624 DOI: 10.1007/S11538-014-0054-4  0.335
2015 Joshi B, Shiu A. A Survey of Methods for Deciding Whether a Reaction Network is Multistationary Mathematical Modelling of Natural Phenomena. 10: 47-67. DOI: 10.1051/Mmnp/201510504  0.369
2014 Gopalkrishnan M, Miller E, Shiu A. A geometric approach to the global attractor conjecture Siam Journal On Applied Dynamical Systems. 13: 758-797. DOI: 10.1137/130928170  0.609
2013 Gopalkrishnan M, Miller E, Shiu A. A projection argument for differential inclusions, with applications to persistence of mass-action kinetics Symmetry, Integrability and Geometry: Methods and Applications (Sigma). 9. DOI: 10.3842/Sigma.2013.025  0.558
2013 Joshi B, Shiu A. Atoms of multistationarity in chemical reaction networks Journal of Mathematical Chemistry. 51: 153-178. DOI: 10.1007/S10910-012-0072-0  0.387
2012 Pérez Millán M, Dickenstein A, Shiu A, Conradi C. Chemical Reaction Systems with Toric Steady States Bulletin of Mathematical Biology. 74: 1027-1065. PMID 21989565 DOI: 10.1007/S11538-011-9685-X  0.381
2012 Joshi B, Shiu A. Simplifying the jacobian criterion for precluding multistationarity in chemical reaction networks Siam Journal On Applied Mathematics. 72: 857-876. DOI: 10.1137/110837206  0.417
2010 Shiu A, Sturmfels B. Siphons in chemical reaction networks. Bulletin of Mathematical Biology. 72: 1448-63. PMID 20091352 DOI: 10.1007/S11538-010-9502-Y  0.553
2010 Anderson DF, Shiu A. The dynamics of weakly reversible population processes near facets Siam Journal On Applied Mathematics. 70: 1840-1858. DOI: 10.1137/090764098  0.385
2009 Morton J, Pachter L, Shiu A, Sturmfels B, Wienand O. Convex Rank Tests and Semigraphoids Siam Journal On Discrete Mathematics. 23: 1117-1134. DOI: 10.1137/080715822  0.592
2009 Craciun G, Dickenstein A, Shiu A, Sturmfels B. Toric dynamical systems Journal of Symbolic Computation. 44: 1551-1565. DOI: 10.1016/J.Jsc.2008.08.006  0.535
2008 Dequéant ML, Ahnert S, Edelsbrunner H, Fink TM, Glynn EF, Hattem G, Kudlicki A, Mileyko Y, Morton J, Mushegian AR, Pachter L, Rowicka M, Shiu A, Sturmfels B, Pourquié O. Comparison of pattern detection methods in microarray time series of the segmentation clock. Plos One. 3: e2856. PMID 18682743 DOI: 10.1371/Journal.Pone.0002856  0.591
2008 Hemmecke R, Morton J, Shiu A, Sturmfels B, Wienand O. Three counter-examples on semi-graphoids Combinatorics Probability and Computing. 17: 239-257. DOI: 10.1017/S0963548307008838  0.591
2007 Morton J, Pachter L, Shiu A, Sturmfels B. The cyclohedron test for finding periodic genes in time course expression studies. Statistical Applications in Genetics and Molecular Biology. 6: Article 21. PMID 17764440 DOI: 10.2202/1544-6115.1286  0.594
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