Rob DeSalle - Publications

Affiliations: 
American Museum of Natural History, New York, NY, United States 
Area:
evolutionary biology

238 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kamm K, Schierwater B, DeSalle R. Innate immunity in the simplest animals - placozoans. Bmc Genomics. 20: 5. PMID 30611207 DOI: 10.1186/s12864-018-5377-3  0.32
2018 Kamm K, Osigus HJ, Stadler PF, DeSalle R, Schierwater B. Trichoplax genomes reveal profound admixture and suggest stable wild populations without bisexual reproduction. Scientific Reports. 8: 11168. PMID 30042472 DOI: 10.1038/s41598-018-29400-y  0.32
2018 O'Grady PM, DeSalle R. Phylogeny of the Genus . Genetics. 209: 1-25. PMID 29716983 DOI: 10.1534/genetics.117.300583  1
2018 O'Grady P, DeSalle R. Hawaiian Drosophila as an Evolutionary Model Clade: Days of Future Past. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1700246. PMID 29603298 DOI: 10.1002/bies.201700246  1
2018 Schierwater B, DeSalle R. Placozoa. Current Biology : Cb. 28: R97-R98. PMID 29408263 DOI: 10.1016/j.cub.2017.11.042  0.32
2018 Wechman SL, Pradhan AK, DeSalle R, Das SK, Emdad L, Sarkar D, Fisher PB. New Insights Into Beclin-1: Evolution and Pan-Malignancy Inhibitor Activity. Advances in Cancer Research. 137: 77-114. PMID 29405978 DOI: 10.1016/bs.acr.2017.11.002  0.4
2018 Oppenheim SJ, Feindt W, DeSalle R, Goldstein PZ. De Novo characterization of transcriptomes from two North American Papaipema stem-borers (Lepidoptera: Noctuidae). Plos One. 13: e0191061. PMID 29364900 DOI: 10.1371/journal.pone.0191061  0.6
2017 Simon S, Sagasser S, Saccenti E, Brugler MR, Schranz ME, Hadrys H, Amato G, DeSalle R. Comparative transcriptomics reveal developmental turning points during embryogenesis of a hemimetabolous insect, the damselfly Ischnura elegans. Scientific Reports. 7: 13547. PMID 29051502 DOI: 10.1038/s41598-017-13176-8  1
2017 Desalle R, Amato G. Conservation Genetics, Precision Conservation, and De-extinction. The Hastings Center Report. 47: S18-S23. PMID 28746766 DOI: 10.1002/hast.747  1
2017 Rach J, Bergmann T, Paknia O, DeSalle R, Schierwater B, Hadrys H. The marker choice: Unexpected resolving power of an unexplored CO1 region for layered DNA barcoding approaches. Plos One. 12: e0174842. PMID 28406914 DOI: 10.1371/journal.pone.0174842  0.36
2017 Oppenheim SJ, Rosenfeld JA, DeSalle R. Genome content analysis yields new insights into the relationship between the human malaria parasite Plasmodium falciparum and its anopheline vectors. Bmc Genomics. 18: 205. PMID 28241792 DOI: 10.1186/s12864-017-3590-0  0.6
2017 Desalle R, Schierwater B, Hadrys H. MtDNA: The small workhorse of evolutionary studies. Frontiers in Bioscience (Landmark Edition). 22: 873-887. PMID 27814652  0.32
2016 Almeida FC, DeSalle R. Genetic differentiation and adaptive evolution at reproductive loci in incipient Drosophila species. Journal of Evolutionary Biology. PMID 27883252 DOI: 10.1111/jeb.13021  0.92
2016 Rosenfeld JA, Oppenheim S, DeSalle R. A whole genome gene content phylogenetic analysis of anopheline mosquitoes. Molecular Phylogenetics and Evolution. PMID 27866013 DOI: 10.1016/j.ympev.2016.11.006  0.6
2016 Raaijmakers MI, Widmer DS, Narechania A, Eichhoff O, Freiberger SN, Wenzina J, Cheng PF, Mihic-Probst D, Desalle R, Dummer R, Levesque MP. Co-existence of BRAF and NRAS driver mutations in the same melanoma cells results in heterogeneity of targeted therapy resistance. Oncotarget. PMID 27791198 DOI: 10.18632/oncotarget.12848  0.76
2016 Narechania A, Baker R, DeSalle R, Mathema B, Kolokotronis SO, Kreiswirth B, Planet PJ. Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets. Gigascience. 5: 44. PMID 27776538 DOI: 10.1186/s13742-016-0152-3  0.88
2016 Rutschmann S, Detering H, Simon S, Funk DH, Gattolliat JL, Hughes SJ, Raposeiro PM, DeSalle R, Sartori M, Monaghan MT. Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome. Molecular Phylogenetics and Evolution. PMID 27742475 DOI: 10.1016/j.ympev.2016.10.007  0.56
2016 Kolokotronis SO, Foox J, Rosenfeld JA, Brugler MR, Reeves D, Benoit JB, Booth W, Robison G, Steffen M, Sakas Z, Palli SR, Schal C, Richards S, Narechania A, Baker RH, ... ... DeSalle R, et al. The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae). Mitochondrial Dna. Part B, Resources. 1: 425-427. PMID 27617305 DOI: 10.1080/23802359.2016.1180268  1
2016 Tessler M, Brugler MR, DeSalle R, Hersch R, Velho LF, Segovia BT, Lansac-Toha FA, Lemke MJ. A Global eDNA Comparison of Freshwater Bacterioplankton Assemblages Focusing on Large-River Floodplain Lakes of Brazil. Microbial Ecology. PMID 27613296 DOI: 10.1007/s00248-016-0834-5  1
2016 Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, ... ... Desalle R, et al. Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nature Genetics. PMID 27111036 DOI: 10.1038/ng.3559  1
2016 Baker RH, Narechania A, DeSalle R, Johns PM, Reinhardt JA, Wilkinson GS. Spermatogenesis drives rapid gene creation and masculinization of the X chromosome in stalk-eyed flies (Diopsidae). Genome Biology and Evolution. PMID 26951781 DOI: 10.1093/gbe/evw043  1
2016 Rosenfeld J, Foox J, DeSalle R. Data for constructing insect genome content matrices for phylogenetic analysis and functional annotation. Data in Brief. 6: 279-81. PMID 26862572 DOI: 10.1016/j.dib.2015.12.015  1
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, ... ... DeSalle R, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/ncomms10164  1
2015 Rosenfeld J, Foox J, DeSalle R. Insect genome content phylogeny and functional annotation of core insect genomes. Molecular Phylogenetics and Evolution. PMID 26549428 DOI: 10.1016/j.ympev.2015.10.014  1
2015 Van Doorslaer K, DeSalle R, Einstein MH, Burk RD. Degradation of Human PDZ-Proteins by Human Alphapapillomaviruses Represents an Evolutionary Adaptation to a Novel Cellular Niche. Plos Pathogens. 11: e1004980. PMID 26086730 DOI: 10.1371/journal.ppat.1004980  1
2015 Mehr S, Verdes A, DeSalle R, Sparks J, Pieribone V, Gruber DF. Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae). Bmc Genomics. 16: 445. PMID 26059236 DOI: 10.1186/s12864-015-1565-6  1
2015 DeSalle R, Kolokotronis SO. Changes in the Mitogenome Announcement manuscript category. Mitochondrial Dna. 26: 1. PMID 25693712 DOI: 10.3109/19401736.2015.1013392  1
2015 Oppenheim SJ, Baker RH, Simon S, DeSalle R. We can't all be supermodels: the value of comparative transcriptomics to the study of non-model insects. Insect Molecular Biology. 24: 139-54. PMID 25524309 DOI: 10.1111/imb.12154  1
2014 Sokhi UK, DeSalle R, Bacolod MD, Das SK, Dasgupta S, Sarkar D, Fisher PB. Evolutionary dynamics of Polynucelotide phosphorylases. Molecular Phylogenetics and Evolution. 73: 77-86. PMID 24503483 DOI: 10.1016/j.ympev.2014.01.020  1
2014 Desalle R, Chicote JU, Sun TT, Garcia-España A. Generation of divergent uroplakin tetraspanins and their partners during vertebrate evolution: identification of novel uroplakins. Bmc Evolutionary Biology. 14: 13. PMID 24450554 DOI: 10.1186/1471-2148-14-13  1
2013 Schierwater B, Stadler P, Desalle R, Podsiadlowski L. Mitogenomics and metazoan evolution. Molecular Phylogenetics and Evolution. 69: 311-2. PMID 24010851 DOI: 10.1016/j.ympev.2013.08.009  1
2013 Chen Z, Schiffman M, Herrero R, DeSalle R, Anastos K, Segondy M, Sahasrabuddhe VV, Gravitt PE, Hsing AW, Burk RD. Evolution and taxonomic classification of alphapapillomavirus 7 complete genomes: HPV18, HPV39, HPV45, HPV59, HPV68 and HPV70. Plos One. 8: e72565. PMID 23977318 DOI: 10.1371/journal.pone.0072565  1
2013 Pooyaei Mehr SF, DeSalle R, Kao HT, Narechania A, Han Z, Tchernov D, Pieribone V, Gruber DF. Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals. Bmc Genomics. 14: 546. PMID 23937070 DOI: 10.1186/1471-2164-14-546  1
2013 Olival KJ, Dick CW, Simmons NB, Morales JC, Melnick DJ, Dittmar K, Perkins SL, Daszak P, Desalle R. Lack of population genetic structure and host specificity in the bat fly, Cyclopodia horsfieldi, across species of Pteropus bats in Southeast Asia. Parasites & Vectors. 6: 231. PMID 23924629 DOI: 10.1186/1756-3305-6-231  1
2013 Lee SG, Kang DC, DeSalle R, Sarkar D, Fisher PB. AEG-1/MTDH/LYRIC, the beginning: initial cloning, structure, expression profile, and regulation of expression. Advances in Cancer Research. 120: 1-38. PMID 23889986 DOI: 10.1016/B978-0-12-401676-7.00001-2  1
2013 Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, Ooi LC, Ooi SE, Chan KL, Halim MA, Azizi N, Nagappan J, Bacher B, Lakey N, Smith SW, ... ... DeSalle R, et al. Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature. 500: 335-9. PMID 23883927 DOI: 10.1038/nature12309  1
2013 Sokhi UK, Das SK, Dasgupta S, Emdad L, Shiang R, DeSalle R, Sarkar D, Fisher PB. Human polynucleotide phosphorylase (hPNPaseold-35): should I eat you or not--that is the question? Advances in Cancer Research. 119: 161-90. PMID 23870512 DOI: 10.1016/B978-0-12-407190-2.00005-8  1
2013 Bergmann T, Rach J, Damm S, Desalle R, Schierwater B, Hadrys H. The potential of distance-based thresholds and character-based DNA barcoding for defining problematic taxonomic entities by CO1 and ND1. Molecular Ecology Resources. 13: 1069-81. PMID 23711340 DOI: 10.1111/1755-0998.12125  1
2013 Eitel M, Osigus HJ, DeSalle R, Schierwater B. Global diversity of the Placozoa. Plos One. 8: e57131. PMID 23565136 DOI: 10.1371/journal.pone.0057131  1
2013 Argimón S, Alekseyenko AV, DeSalle R, Caufield PW. Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts. Plos One. 8: e56305. PMID 23457545 DOI: 10.1371/journal.pone.0056305  1
2013 Planet PJ, Rampersaud R, Hymes SR, Whittier S, Della-Latta PA, Narechania A, Daugherty SC, Santana-Cruz I, Desalle R, Ravel J, Ratner AJ. Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1. Genome Announcements. 1. PMID 23405291 DOI: 10.1128/genomeA.00117-12  0.76
2013 Weber DS, Van Coeverden De Groot PJ, Peacock E, Schrenzel MD, Perez DA, Thomas S, Shelton JM, Else CK, Darby LL, Acosta L, Harris C, Youngblood J, Boag P, Desalle R. Low MHC variation in the polar bear: Implications in the face of Arctic warming? Animal Conservation. 16: 671-683. DOI: 10.1111/acv.12045  1
2012 Simon S, Narechania A, Desalle R, Hadrys H. Insect phylogenomics: exploring the source of incongruence using new transcriptomic data. Genome Biology and Evolution. 4: 1295-309. PMID 23175716 DOI: 10.1093/gbe/evs104  1
2012 Doukakis P, Pikitch EK, Rothschild A, DeSalle R, Amato G, Kolokotronis SO. Testing the effectiveness of an international conservation agreement: marketplace forensics and CITES caviar trade regulation. Plos One. 7: e40907. PMID 22848410 DOI: 10.1371/journal.pone.0040907  1
2012 Amato G, DeSalle R. Assessing biodiversity funding during the sixth extinction. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 658-60. PMID 22674583 DOI: 10.1002/bies.201200048  1
2012 Oliveira DC, Almeida FC, O'Grady PM, Armella MA, DeSalle R, Etges WJ. Monophyly, divergence times, and evolution of host plant use inferred from a revised phylogeny of the Drosophila repleta species group. Molecular Phylogenetics and Evolution. 64: 533-44. PMID 22634936 DOI: 10.1016/j.ympev.2012.05.012  1
2012 Sancho A, Duran J, García-España A, Mauvezin C, Alemu EA, Lamark T, Macias MJ, DeSalle R, Royo M, Sala D, Chicote JU, Palacín M, Johansen T, Zorzano A. DOR/Tp53inp2 and Tp53inp1 constitute a metazoan gene family encoding dual regulators of autophagy and transcription. Plos One. 7: e34034. PMID 22470510 DOI: 10.1371/journal.pone.0034034  1
2012 Rosenfeld JA, Payne A, DeSalle R. Random roots and lineage sorting. Molecular Phylogenetics and Evolution. 64: 12-20. PMID 22445448 DOI: 10.1016/j.ympev.2012.02.029  1
2012 Pentony MM, Winters P, Penfold-Brown D, Drew K, Narechania A, DeSalle R, Bonneau R, Purugganan MD. The plant proteome folding project: structure and positive selection in plant protein families. Genome Biology and Evolution. 4: 360-71. PMID 22345424 DOI: 10.1093/gbe/evs015  1
2012 Karched M, Furgang D, Planet PJ, DeSalle R, Fine DH. Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate. Journal of Bacteriology. 194: 1275-6. PMID 22328766 DOI: 10.1128/JB.06710-11  1
2012 Rosenfeld JA, DeSalle R. E value cutoff and eukaryotic genome content phylogenetics. Molecular Phylogenetics and Evolution. 63: 342-50. PMID 22306824 DOI: 10.1016/j.ympev.2012.01.003  1
2012 Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biology and Evolution. 4: 30-43. PMID 22094860 DOI: 10.1093/gbe/evr121  1
2012 Lazzarini LC, Rosenfeld J, Huard RC, Hill V, Lapa e Silva JR, DeSalle R, Rastogi N, Ho JL. Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 798-806. PMID 21920466 DOI: 10.1016/j.meegid.2011.08.028  1
2012 DeSalle R, Tattersall I. The brain: Big bangs, behaviors, and beliefs The Brain: Big Bangs, Behaviors, and Beliefs. 1-354.  1
2011 Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/journal.pgen.1002411  1
2011 Hanner R, Desalle R, Ward RD, Kolokotronis SO. The Fish Barcode of Life (FISH-BOL) special issue. Mitochondrial Dna. 22: 1-2. PMID 21980984 DOI: 10.3109/19401736.2011.598767  1
2011 Almeida FC, Giannini NP, DeSalle R, Simmons NB. Evolutionary relationships of the old world fruit bats (Chiroptera, Pteropodidae): another star phylogeny? Bmc Evolutionary Biology. 11: 281. PMID 21961908 DOI: 10.1186/1471-2148-11-281  1
2011 Hekkala E, Shirley MH, Amato G, Austin JD, Charter S, Thorbjarnarson J, Vliet KA, Houck ML, Desalle R, Blum MJ. An ancient icon reveals new mysteries: mummy DNA resurrects a cryptic species within the Nile crocodile. Molecular Ecology. 20: 4199-215. PMID 21906195 DOI: 10.1111/j.1365-294X.2011.05245.x  1
2011 Bennett CE, Wilson BS, Desalle R. DNA barcoding of an invasive mammal species, the small Indian mongoose (Herpestes javanicus; E. Geoffroy Saint-Hillaire 1818) in the Caribbean and Hawaiian Islands. Mitochondrial Dna. 22: 12-8. PMID 21732719 DOI: 10.3109/19401736.2010.542241  1
2011 Smith B, Chen Z, Reimers L, van Doorslaer K, Schiffman M, Desalle R, Herrero R, Yu K, Wacholder S, Wang T, Burk RD. Sequence imputation of HPV16 genomes for genetic association studies. Plos One. 6: e21375. PMID 21731721 DOI: 10.1371/journal.pone.0021375  1
2011 Chen Z, Schiffman M, Herrero R, Desalle R, Anastos K, Segondy M, Sahasrabuddhe VV, Gravitt PE, Hsing AW, Burk RD. Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67. Plos One. 6: e20183. PMID 21673791 DOI: 10.1371/journal.pone.0020183  1
2011 Reid BN, LE M, McCord WP, Iverson JB, Georges A, Bergmann T, Amato G, Desalle R, Naro-Maciel E. Comparing and combining distance-based and character-based approaches for barcoding turtles. Molecular Ecology Resources. 11: 956-67. PMID 21635698 DOI: 10.1111/j.1755-0998.2011.03032.x  1
2011 Goldstein PZ, DeSalle R. Integrating DNA barcode data and taxonomic practice: determination, discovery, and description. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 135-47. PMID 21184470 DOI: 10.1002/bies.201000036  1
2011 O'Grady PM, Lapoint RT, Bonacum J, Lasola J, Owen E, Wu Y, DeSalle R. Phylogenetic and ecological relationships of the Hawaiian Drosophila inferred by mitochondrial DNA analysis. Molecular Phylogenetics and Evolution. 58: 244-56. PMID 21144904 DOI: 10.1016/j.ympev.2010.11.022  1
2011 Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: Using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life Cladistics. 27: 417-427. DOI: 10.1111/j.1096-0031.2010.00337.x  1
2011 Naro-Maciel E, Reid B, Holmes KE, Brumbaugh DR, Martin M, DeSalle R. Mitochondrial DNA sequence variation in spiny lobsters: Population expansion, panmixia, and divergence Marine Biology. 158: 2027-2041. DOI: 10.1007/s00227-011-1710-y  1
2011 Tattersall I, DeSalle R. Race?: Debunking a scientific myth Race?: Debunking a Scientific Myth. 1-226.  1
2010 Naro-Maciel E, Reid B, Fitzsimmons NN, LE M, Desalle R, Amato G. DNA barcodes for globally threatened marine turtles: a registry approach to documenting biodiversity. Molecular Ecology Resources. 10: 252-63. PMID 21565020 DOI: 10.1111/j.1755-0998.2009.02747.x  1
2010 Escalante P, Desalle R, Kolokotronis SO. The MexBOL initiative. Mitochondrial Dna. 21: 1-2. PMID 21271851 DOI: 10.3109/19401736.2010.551715  1
2010 Yassin A, Markow TA, Narechania A, O'Grady PM, DeSalle R. The genus Drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding. Molecular Phylogenetics and Evolution. 57: 509-17. PMID 20800099 DOI: 10.1016/j.ympev.2010.08.020  1
2010 Perez-Sweeney B, DeSalle R, Ho JL. An introduction to a novel population genetic approach for HIV characterization. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 10: 1155-64. PMID 20637314 DOI: 10.1016/j.meegid.2010.07.010  1
2010 Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biology and Evolution. 2: 225-39. PMID 20624728 DOI: 10.1093/gbe/evq012  1
2010 Yassin A, Lienau EK, Narechania A, DeSalle R. Catching the phylogenic history through the ontogenic hourglass: a phylogenomic analysis of Drosophila body segmentation genes. Evolution & Development. 12: 288-95. PMID 20565539 DOI: 10.1111/j.1525-142X.2010.00414.x  1
2010 Cibrián-Jaramillo A, Daly AC, Brenner E, Desalle R, Marler TE. When North and South don't mix: genetic connectivity of a recently endangered oceanic cycad, Cycas micronesica, in Guam using EST-microsatellites. Molecular Ecology. 19: 2364-79. PMID 20497328 DOI: 10.1111/j.1365-294X.2010.04638.x  1
2010 Nagarajan N, Cook C, Di Bonaventura M, Ge H, Richards A, Bishop-Lilly KA, DeSalle R, Read TD, Pop M. Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. Bmc Genomics. 11: 242. PMID 20398345 DOI: 10.1186/1471-2164-11-242  1
2010 Schiffman M, Rodriguez AC, Chen Z, Wacholder S, Herrero R, Hildesheim A, Desalle R, Befano B, Yu K, Safaeian M, Sherman ME, Morales J, Guillen D, Alfaro M, Hutchinson M, et al. A population-based prospective study of carcinogenic human papillomavirus variant lineages, viral persistence, and cervical neoplasia. Cancer Research. 70: 3159-69. PMID 20354192 DOI: 10.1158/0008-5472.CAN-09-4179  1
2010 Wyner Y, Desalle R. Taking the conservation biology perspective to secondary school classrooms. Conservation Biology : the Journal of the Society For Conservation Biology. 24: 649-54. PMID 20337673 DOI: 10.1111/j.1523-1739.2010.01478.x  1
2010 Deo AJ, Costa R, DeLisi LE, DeSalle R, Haghighi F. A novel analytical framework for dissecting the genetic architecture of behavioral symptoms in neuropsychiatric disorders. Plos One. 5: e9714. PMID 20300526 DOI: 10.1371/journal.pone.0009714  1
2010 DeSalle R, Mares R, Garcia-España A. Evolution of cysteine patterns in the large extracellular loop of tetraspanins from animals, fungi, plants and single-celled eukaryotes. Molecular Phylogenetics and Evolution. 56: 486-91. PMID 20171294 DOI: 10.1016/j.ympev.2010.02.015  1
2010 Bonaventura MP, Lee EK, Desalle R, Planet PJ. A whole-genome phylogeny of the family Pasteurellaceae. Molecular Phylogenetics and Evolution. 54: 950-6. PMID 19686857 DOI: 10.1016/j.ympev.2009.08.010  1
2010 Lienau EK, DeSalle R. Is the microbial tree of life verificationist? Cladistics. 26: 195-201. DOI: 10.1111/j.1096-0031.2009.00288.x  1
2010 Hekkala ER, Amato G, DeSalle R, Blum MJ. Molecular assessment of population differentiation and individual assignment potential of Nile crocodile (crocodylus niloticus) populations Conservation Genetics. 11: 1435-1443. DOI: 10.1007/s10592-009-9970-5  1
2010 Dias IMG, Almeida FC, Amato G, DeSalle R, Fonseca CG. Delineating geographic boundaries of the woolly mouse opossums, Micoureus demerarae and Micoureus paraguayanus (Didelphimorphia: Didelphidae) Conservation Genetics. 11: 1579-1585. DOI: 10.1007/s10592-009-9962-5  1
2009 Schierwater B, Kolokotronis SO, Eitel M, DeSalle R. The Diploblast-Bilateria Sister hypothesis: parallel revolution of a nervous systems may have been a simple step. Communicative & Integrative Biology. 2: 403-5. PMID 19907700  0.88
2009 Garcia-España A, DeSalle R. Intron sliding in tetraspanins. Communicative & Integrative Biology. 2: 394-5. PMID 19907697 DOI: 10.4161/cib.2.5.8760  1
2009 Birstein VJ, Desalle R, Doukakis P, Hanner R, Ruban GI, Wong E. Testing taxonomic boundaries and the limit of DNA barcoding in the Siberian sturgeon, Acipenser baerii. Mitochondrial Dna. 20: 110-8. PMID 19900060 DOI: 10.3109/19401730903168182  1
2009 Cibrián-Jaramillo A, Bacon CD, Garwood NC, Bateman RM, Thomas MM, Russell S, Bailey CD, Hahn WJ, Bridgewater SG, DeSalle R. Population genetics of the understory fishtail palm Chamaedorea ernesti-augusti in Belize: high genetic connectivity with local differentiation. Bmc Genetics. 10: 65. PMID 19818141 DOI: 10.1186/1471-2156-10-65  1
2009 Rosenfeld JA, Xuan Z, DeSalle R. Investigating repetitively matching short sequencing reads: the enigmatic nature of H3K9me3. Epigenetics : Official Journal of the Dna Methylation Society. 4: 476-86. PMID 19786836 DOI: 10.4161/epi.4.7.9809  1
2009 Gruber DF, DeSalle R, Lienau EK, Tchernov D, Pieribone VA, Kao HT. Novel internal regions of fluorescent proteins undergo divergent evolutionary patterns. Molecular Biology and Evolution. 26: 2841-8. PMID 19770223 DOI: 10.1093/molbev/msp194  1
2009 DeSalle R. Molecular tooth decay. Plos Genetics. 5: e1000655. PMID 19763174 DOI: 10.1371/journal.pgen.1000655  1
2009 Chen Z, van Doorslaer K, DeSalle R, Wood CE, Kaplan JR, Wagner JD, Burk RD. Genomic diversity and interspecies host infection of alpha12 Macaca fascicularis papillomaviruses (MfPVs). Virology. 393: 304-10. PMID 19716580 DOI: 10.1016/j.virol.2009.07.012  1
2009 Almeida FC, Giannini NP, DeSalle R, Simmons NB. The phylogenetic relationships of cynopterine fruit bats (Chiroptera: Pteropodidae: Cynopterinae). Molecular Phylogenetics and Evolution. 53: 772-83. PMID 19660560 DOI: 10.1016/j.ympev.2009.07.035  1
2009 Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB. Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity. Pharmacology & Therapeutics. 124: 219-34. PMID 19615405 DOI: 10.1016/j.pharmthera.2009.06.012  1
2009 Camp E, Sánchez-Sánchez AV, García-España A, Desalle R, Odqvist L, Enrique O'Connor J, Mullor JL. Nanog regulates proliferation during early fish development. Stem Cells (Dayton, Ohio). 27: 2081-91. PMID 19544407 DOI: 10.1002/stem.133  1
2009 de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R. The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data. Plos One. 4: e5764. PMID 19503618 DOI: 10.1371/journal.pone.0005764  1
2009 Di Bonaventura MP, DeSalle R, Pop M, Nagarajan N, Figurski DH, Fine DH, Kaplan JB, Planet PJ. Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700. Journal of Bacteriology. 191: 4693-4. PMID 19447908 DOI: 10.1128/JB.00447-09  1
2009 Egan M, Lee EK, Chiu JC, Coruzzi G, Desalle R. Gene orthology assessment with OrthologID. Methods in Molecular Biology (Clifton, N.J.). 537: 23-38. PMID 19378138 DOI: 10.1007/978-1-59745-251-9_2  1
2009 Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ. Determination of enriched histone modifications in non-genic portions of the human genome. Bmc Genomics. 10: 143. PMID 19335899 DOI: 10.1186/1471-2164-10-143  1
2009 de Jong D, Eitel M, Jakob W, Osigus HJ, Hadrys H, Desalle R, Schierwater B. Multiple dicer genes in the early-diverging metazoa. Molecular Biology and Evolution. 26: 1333-40. PMID 19276153 DOI: 10.1093/molbev/msp042  1
2009 Garcia-España A, Mares R, Sun TT, Desalle R. Intron evolution: testing hypotheses of intron evolution using the phylogenomics of tetraspanins. Plos One. 4: e4680. PMID 19262691 DOI: 10.1371/journal.pone.0004680  1
2009 Schierwater B, Eitel M, Jakob W, Osigus HJ, Hadrys H, Dellaporta SL, Kolokotronis SO, Desalle R. Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis. Plos Biology. 7: e20. PMID 19175291 DOI: 10.1371/journal.pbio.1000020  1
2009 Chen Z, DeSalle R, Schiffman M, Herrero R, Burk RD. Evolutionary dynamics of variant genomes of human papillomavirus types 18, 45, and 97. Journal of Virology. 83: 1443-55. PMID 19036820 DOI: 10.1128/JVI.02068-08  1
2009 Lienau EK, DeSalle R. Evidence, content and corroboration and the Tree of Life. Acta Biotheoretica. 57: 187-99. PMID 19015816 DOI: 10.1007/s10441-008-9066-5  1
2009 Almeida FC, Desalle R. Orthology, function and evolution of accessory gland proteins in the Drosophila repleta group. Genetics. 181: 235-45. PMID 19015541 DOI: 10.1534/genetics.108.096263  1
2009 Schierwater B, de Jong D, Desalle R. Placozoa and the evolution of Metazoa and intrasomatic cell differentiation. The International Journal of Biochemistry & Cell Biology. 41: 370-9. PMID 18935972 DOI: 10.1016/j.biocel.2008.09.023  1
2009 Lemke MJ, Lienau EK, Rothe J, Pagioro TA, Rosenfeld J, Desalle R. Description of freshwater bacterial assemblages from the upper paraná river floodpulse system, Brazil. Microbial Ecology. 57: 94-103. PMID 18587611 DOI: 10.1007/s00248-008-9398-3  1
2009 Schierwater B, Kolokotronis SO, Eitel M, DeSalle R. The Diploblast-Bilateria Sister hypothesis: Parallel evolution of a nervous systems may have been a simple step Communicative and Integrative Biology. 2: 403-405. DOI: 10.4161/cib.2.5.8763  1
2009 Dias IMG, Amato G, Cunha HM, DeSalle R, Paglia AP, Peterson JK, Fonseca CG. Isolation, characterization and cross-species amplification of new microsatellite markers for three opossum species of the Didelphidae family Conservation Genetics Resources. 1: 405-410. DOI: 10.1007/s12686-009-9094-8  1
2009 Calcagnotto D, DeSalle R. Population genetic structuring in pacu (Piaractus mesopotamicus) across the paraná-paraguay basin: Evidence from microsatellites Neotropical Ichthyology. 7: 607-616.  1
2008 Sarkar IN, Planet PJ, Desalle R. caos software for use in character-based DNA barcoding. Molecular Ecology Resources. 8: 1256-9. PMID 21586014 DOI: 10.1111/j.1755-0998.2008.02235.x  1
2008 Starger CJ, Yeoh SS, Dai CF, Baker AC, Desalle R. Ten polymorphic STR loci in the cosmopolitan reef coral, Pocillopora damicornis. Molecular Ecology Resources. 8: 619-21. PMID 21585850 DOI: 10.1111/j.1471-8286.2007.02017.x  1
2008 Dias IM, Amato G, Carvalho MR, Cunha HM, Paglia AP, Desalle R, Fonseca CG. PERMANENT GENETIC RESOURCES: Characterization of eight microsatellite loci in the woolly mouse opossum, Micoureus paraguayanus, isolated from Micoureus demerarae. Molecular Ecology Resources. 8: 345-7. PMID 21585787 DOI: 10.1111/j.1471-8286.2007.01951.x  1
2008 Cibrián-Jaramillo A, Hahn WJ, Desalle R. PERMANENT GENETIC RESOURCES: Development of microsatellite markers of the Mexican understorey palm Chamaedorea elegans, cross-species genotyping, and amplification in congeners. Molecular Ecology Resources. 8: 322-4. PMID 21585780 DOI: 10.1111/j.1471-8286.2007.01942.x  1
2008 Friedman M, DeSalle R. Mitochondrial DNA extraction and sequencing of formalin-fixed archival snake tissue. Mitochondrial Dna. 19: 433-7. PMID 19489136 DOI: 10.1080/19401730802449170  1
2008 Almeida FC, Leszczyniecka M, Fisher PB, Desalle R. Examining ancient inter-domain horizontal gene transfer. Evolutionary Bioinformatics Online. 4: 109-19. PMID 19204812  0.92
2008 Rosenfeld JA, DeSalle R, Lee EK, O'Grady P. Using whole genome presence/absence data to untangle function in 12 Drosophila genomes. Fly. 2: 291-9. PMID 19139635  1
2008 Wyatt KB, Campos PF, Gilbert MT, Kolokotronis SO, Hynes WH, DeSalle R, Ball SJ, Daszak P, MacPhee RD, Greenwood AD. Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease. Plos One. 3: e3602. PMID 18985148 DOI: 10.1371/journal.pone.0003602  1
2008 Sarkar D, Desalle R, Fisher PB. Evolution of MDA-5/RIG-I-dependent innate immunity: independent evolution by domain grafting. Proceedings of the National Academy of Sciences of the United States of America. 105: 17040-5. PMID 18971330 DOI: 10.1073/pnas.0804956105  1
2008 DeSalle R, Schierwater B. An even "newer" animal phylogeny. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 1043-7. PMID 18937347 DOI: 10.1002/bies.20842  1
2008 Almeida FC, Desalle R. Evidence of adaptive evolution of accessory gland proteins in closely related species of the Drosophila repleta group. Molecular Biology and Evolution. 25: 2043-53. PMID 18635677 DOI: 10.1093/molbev/msn155  1
2008 O'Grady P, Desalle R. Out of Hawaii: the origin and biogeography of the genus Scaptomyza (Diptera: Drosophilidae). Biology Letters. 4: 195-9. PMID 18296276 DOI: 10.1098/rsbl.2007.0575  1
2008 Garcia-España A, Chung PJ, Sarkar IN, Stiner E, Sun TT, Desalle R. Appearance of new tetraspanin genes during vertebrate evolution. Genomics. 91: 326-34. PMID 18291621 DOI: 10.1016/j.ygeno.2007.12.005  1
2008 Sarkar IN, Egan MG, Coruzzi G, Lee EK, DeSalle R. Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics. Bmc Bioinformatics. 9: 103. PMID 18282301 DOI: 10.1186/1471-2105-9-103  1
2008 Rach J, Desalle R, Sarkar IN, Schierwater B, Hadrys H. Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata. Proceedings. Biological Sciences / the Royal Society. 275: 237-47. PMID 17999953 DOI: 10.1098/rspb.2007.1290  1
2008 Desalle R. Mitochondrial DNA inaugural issue Mitochondrial Dna. 19: 371-372. DOI: 10.1080/19401730802306032  1
2008 Cibrián-Jaramillo A, Marler TE, DeSalle R, Brenner ED. Development of EST-microsatellites from the cycad Cycas rumphii, and their use in the recently endangered Cycas micronesica Conservation Genetics. 9: 1051-1054. DOI: 10.1007/s10592-007-9447-3  1
2008 Almeida FC, Leszczyniecka M, Fisher PB, DeSalle R. Examining ancient inter-domain horizontal gene transer Evolutionary Bioinformatics. 2008: 109-119.  1
2008 Oliveira DCSG, Leonidas M, Etges WJ, O'Grady PM, DeSalle R. Species delimitation in the Drosophila aldrichi subcluster (Diptera: Drosophilidae) using DNA sequences Zootaxa. 37-47.  1
2007 Schierwater B, Desalle R. Can we ever identify the Urmetazoan? Integrative and Comparative Biology. 47: 670-6. PMID 21669748 DOI: 10.1093/icb/icm040  1
2007 Desalle R, Schierwater B. Key transitions in animal evolution. Integrative and Comparative Biology. 47: 667-9. PMID 21669747 DOI: 10.1093/icb/icm042  1
2007 Desalle R. Phenetic and DNA taxonomy; a comment on Waugh. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 1289-90. PMID 18022809 DOI: 10.1002/bies.20667  1
2007 Kao HT, Sturgis S, DeSalle R, Tsai J, Davis D, Gruber DF, Pieribone VA. Dynamic regulation of fluorescent proteins from a single species of coral. Marine Biotechnology (New York, N.Y.). 9: 733-46. PMID 17955294 DOI: 10.1007/s10126-007-9025-1  1
2007 Gatesy J, DeSalle R, Wahlberg N. How many genes should a systematist sample? Conflicting insights from a phylogenomic matrix characterized by replicated incongruence. Systematic Biology. 56: 355-63. PMID 17464890 DOI: 10.1080/10635150701294733  1
2007 Naro-Maciel E, Becker JH, Lima EH, Marcovaldi MA, DeSalle R. Testing dispersal hypotheses in foraging green sea turtles (Chelonia mydas) of Brazil. The Journal of Heredity. 98: 29-39. PMID 17158465 DOI: 10.1093/jhered/esl050  1
2007 Chen Z, Schiffman M, Herrero R, Desalle R, Burk RD. Human papillomavirus (HPV) types 101 and 103 isolated from cervicovaginal cells lack an E6 open reading frame (ORF) and are related to gamma-papillomaviruses. Virology. 360: 447-53. PMID 17125811 DOI: 10.1016/j.virol.2006.10.022  1
2007 Kelly RP, Sarkar IN, Eernisse DJ, DeSalle R. DNA barcoding using chitons (genus Mopalia): Barcoding Molecular Ecology Notes. 7: 177-183. DOI: 10.1111/j.1471-8286.2006.01641.x  1
2007 de Carvalho MR, Bockmann FA, Amorim DS, Brandão CRF, de Vivo M, de Figueiredo JL, Britski HA, de Pinna MCC, Menezes NA, Marques FPL, Papavero N, Cancello EM, Crisci JV, McEachran JD, Schelly RC, ... ... DeSalle R, et al. Taxonomic impediment or impediment to taxonomy? A commentary on systematics and the cybertaxonomic-automation paradigm Evolutionary Biology. 34: 140-143. DOI: 10.1007/s11692-007-9011-6  1
2007 Tattersall I, DeSalle R. Madagascar's lemurs: Cryptic diversity or taxonomic inflation? Evolutionary Anthropology. 16: 12-23. DOI: 10.1002/evan.20126  1
2006 Desalle R. Species discovery versus species identification in DNA barcoding efforts: response to Rubinoff. Conservation Biology : the Journal of the Society For Conservation Biology. 20: 1545-7. PMID 17002772 DOI: 10.1111/j.1523-1739.2006.00543.x  1
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/omi.2006.10.231  0.88
2006 Burk RD, DeSalle R. The tango and tangle of human papillomavirus and the human genome. Journal of the National Cancer Institute. 98: 1026-7. PMID 16882934 DOI: 10.1093/jnci/djj322  1
2006 Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. Reciprocal illumination in the gene content tree of life. Systematic Biology. 55: 441-53. PMID 16861208 DOI: 10.1080/10635150600697416  1
2006 Garcia-España A, Chung PJ, Zhao X, Lee A, Pellicer A, Yu J, Sun TT, Desalle R. Origin of the tetraspanin uroplakins and their co-evolution with associated proteins: implications for uroplakin structure and function. Molecular Phylogenetics and Evolution. 41: 355-67. PMID 16814572 DOI: 10.1016/j.ympev.2006.04.023  1
2006 de la Torre JE, Egan MG, Katari MS, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R. ESTimating plant phylogeny: lessons from partitioning. Bmc Evolutionary Biology. 6: 48. PMID 16776834 DOI: 10.1186/1471-2148-6-48  1
2006 Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics (Oxford, England). 22: 699-707. PMID 16410324 DOI: 10.1093/bioinformatics/btk040  1
2006 DeSalle R. What's in a character? Journal of Biomedical Informatics. 39: 6-17. PMID 16384747 DOI: 10.1016/j.jbi.2005.11.002  1
2006 Deo AJ, DeSalle R. Nested areas of endemism analysis Journal of Biogeography. 33: 1511-1526. DOI: 10.1111/j.1365-2699.2006.01559.x  1
2006 Giannini NP, Almeida FC, Simmons NB, DeSalle R. Phylogenetic relationships of the enigmatic harpy fruit bat, Harpyionycteris (Mammalia: Chiroptera: Pteropodidae) American Museum Novitates. 1-12.  1
2005 Narechania A, Chen Z, DeSalle R, Burk RD. Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses. Journal of Virology. 79: 15503-10. PMID 16306621 DOI: 10.1128/JVI.79.24.15503-15510.2005  1
2005 Corthals A, Desalle R. An application of tissue and DNA banking for genomics and conservation: the Ambrose Monell Cryo-Collection (AMCC). Systematic Biology. 54: 819-23. PMID 16243765 DOI: 10.1080/10635150590950353  1
2005 DeSalle R, Egan MG, Siddall M. The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 360: 1905-16. PMID 16214748 DOI: 10.1098/rstb.2005.1722  1
2005 Bonacum J, O'Grady PM, Kambysellis M, Desalle R. Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila. Molecular Phylogenetics and Evolution. 37: 73-82. PMID 16182150 DOI: 10.1016/j.ympev.2005.03.008  1
2005 Schiffman M, Herrero R, Desalle R, Hildesheim A, Wacholder S, Rodriguez AC, Bratti MC, Sherman ME, Morales J, Guillen D, Alfaro M, Hutchinson M, Wright TC, Solomon D, Chen Z, et al. The carcinogenicity of human papillomavirus types reflects viral evolution. Virology. 337: 76-84. PMID 15914222 DOI: 10.1016/j.virol.2005.04.002  1
2005 Calcagnotto D, Schaefer SA, DeSalle R. Relationships among characiform fishes inferred from analysis of nuclear and mitochondrial gene sequences. Molecular Phylogenetics and Evolution. 36: 135-53. PMID 15904862 DOI: 10.1016/j.ympev.2005.01.004  1
2005 Chen Z, Terai M, Fu L, Herrero R, DeSalle R, Burk RD. Diversifying selection in human papillomavirus type 16 lineages based on complete genome analyses. Journal of Virology. 79: 7014-23. PMID 15890941 DOI: 10.1128/JVI.79.11.7014-7023.2005  1
2005 DeSalle R, Gregory TR, Johnston JS. Preparation of samples for comparative studies of arthropod chromosomes: visualization, in situ hybridization, and genome size estimation. Methods in Enzymology. 395: 460-88. PMID 15865980 DOI: 10.1016/S0076-6879(05)95025-8  1
2005 DeSalle R. Animal phylogenomics: multiple interspecific genome comparisons. Methods in Enzymology. 395: 104-33. PMID 15865964 DOI: 10.1016/S0076-6879(05)95008-8  1
2005 Hadrys T, DeSalle R, Sagasser S, Fischer N, Schierwater B. The Trichoplax PaxB gene: a putative Proto-PaxA/B/C gene predating the origin of nerve and sensory cells. Molecular Biology and Evolution. 22: 1569-78. PMID 15858210 DOI: 10.1093/molbev/msi150  1
2005 Helfenbein KG, DeSalle R. Falsifications and corroborations: Karl Popper's influence on systematics. Molecular Phylogenetics and Evolution. 35: 271-80. PMID 15737596 DOI: 10.1016/j.ympev.2005.01.003  1
2005 DeSalle R. Genetics at the brink of extinction. Heredity. 94: 386-7. PMID 15674381 DOI: 10.1038/sj.hdy.6800641  1
2005 Birstein VJ, Ruban G, Ludwig A, Doukakis P, DeSalle R. The enigmatic Caspian Sea Russian sturgeon: How many cryptic forms does it contain? Systematics and Biodiversity. 3: 203-218. DOI: 10.1017/S1477200005001647  1
2005 Gregory T. RT, DeSalle R. Comparative Genomics in Prokaryotes The Evolution of the Genome. 585-675. DOI: 10.1016/B978-012301463-4/50012-7  1
2005 Chiu JC, Brenner ED, Desalle R, Barboza NM, Coruzzi GM. Analysis of glutamate receptor genes in plants: Progress and prospects Glutamate Receptors in Peripheral Tissue: Excitatory Transmission Outside the Cns. 245-255. DOI: 10.1007/0-306-48644-X_16  1
2005 Oliveira DCSG, O'Grady PM, Etges WJ, Heed WB, DeSalle R. Molecular systematics and geographical distribution of the Drosophila longicornis species complex (Diptera: Drosophilidae) Zootaxa. 1-32.  1
2005 Goldstein P, Wyner Y, Doukakis P, Egan MG, Amato G, Rosenbaum H, DeSalle R. Theory and methods for diagnosing species and populations in conservation Annals of the Missouri Botanical Garden. 92: 12-27.  1
2004 DeSalle R, Amato G. The expansion of conservation genetics. Nature Reviews. Genetics. 5: 702-12. PMID 15372093 DOI: 10.1038/nrg1425  1
2004 Herbst L, Ene A, Su M, Desalle R, Lenz J. Tumor outbreaks in marine turtles are not due to recent herpesvirus mutations. Current Biology : Cb. 14: R697-9. PMID 15341757 DOI: 10.1016/j.cub.2004.08.040  1
2004 Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R. ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinformatics (Oxford, England). 20: 3462-5. PMID 15271781 DOI: 10.1093/bioinformatics/bth427  1
2004 Narechania A, Terai M, Chen Z, DeSalle R, Burk RD. Lack of the canonical pRB-binding domain in the E7 ORF of artiodactyl papillomaviruses is associated with the development of fibropapillomas. The Journal of General Virology. 85: 1243-50. PMID 15105541 DOI: 10.1099/vir.0.19765-0  1
2004 Leszczyniecka M, DeSalle R, Kang DC, Fisher PB. The origin of polynucleotide phosphorylase domains. Molecular Phylogenetics and Evolution. 31: 123-30. PMID 15019613 DOI: 10.1016/j.ympev.2003.07.012  1
2003 Oliveira DC, Wintermute EH, Etges WJ, Heed WB, O'Grady PM, Desalle R. Hierarchical structure in the Drosophila mojavensis cluster (Diptera: Drosophilidae). Hereditas. 139: 223-7. PMID 15061805 DOI: 10.1111/j.1601-5223.2003.01761.x  1
2003 DeSalle R, Branham MA, O'Grady P, Gatesy J. The evolution of HOM-C homeoboxes in the Dipteran family Drosophilidae. Insect Molecular Biology. 12: 345-51. PMID 12864914 DOI: 10.1046/j.1365-2583.2003.00417.x  1
2003 Goldstein PZ, Desalle R. Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens. Molecular Ecology. 12: 1993-8. PMID 12803647 DOI: 10.1046/j.1365-294X.2003.01860.x  1
2003 Gatesy J, Amato G, Norell M, DeSalle R, Hayashi C. Combined support for wholesale taxic atavism in gavialine crocodylians. Systematic Biology. 52: 403-22. PMID 12775528 DOI: 10.1080/10635150309329  1
2003 Planet PJ, Kachlany SC, Fine DH, DeSalle R, Figurski DH. The Widespread Colonization Island of Actinobacillus actinomycetemcomitans. Nature Genetics. 34: 193-8. PMID 12717435 DOI: 10.1038/ng1154  1
2002 Rosenbaum HC, Weinrich MT, Stoleson SA, Gibbs JP, Baker CS, DeSalle R. The effect of differential reproductive success on population genetic structure: correlations of life history with matrilines in humpback whales of the gulf of maine. The Journal of Heredity. 93: 389-99. PMID 12642638 DOI: 10.1093/jhered/93.6.389  1
2002 Sarkar IN, Planet PJ, Bael TE, Stanley SE, Siddall M, DeSalle R, Figurski DH. Characteristic attributes in cancer microarrays. Journal of Biomedical Informatics. 35: 111-22. PMID 12474425 DOI: 10.1016/S1532-0464(02)00504-X  1
2002 O'Grady PM, Durando CM, Heed WB, Wasserman M, Etges W, Desalle R. Genetic divergence within the Drosophila mayaguana subcluster, a closely related triad of Caribbean species in the repleta species group. Hereditas. 136: 240-5. PMID 12471672  1
2002 Gatesy J, Matthee C, DeSalle R, Hayashi C. Resolution of a supertree/supermatrix paradox. Systematic Biology. 51: 652-64. PMID 12228007 DOI: 10.1080/10635150290102311  1
2002 Sarkar IN, Thornton JW, Planet PJ, Figurski DH, Schierwater B, DeSalle R. An automated phylogenetic key for classifying homeoboxes. Molecular Phylogenetics and Evolution. 24: 388-99. PMID 12220982 DOI: 10.1016/S1055-7903(02)00259-2  1
2002 Schierwater B, Dellaporta S, DeSalle R. Is the evolution of Cnox-2 Hox/ParaHox genes "multicolored" and "polygenealogical?". Molecular Phylogenetics and Evolution. 24: 374-8. PMID 12220979 DOI: 10.1016/S1055-7903(02)00238-5  1
2002 Terai M, DeSalle R, Burk RD. Lack of canonical E6 and E7 open reading frames in bird papillomaviruses: Fringilla coelebs papillomavirus and Psittacus erithacus timneh papillomavirus. Journal of Virology. 76: 10020-3. PMID 12208979 DOI: 10.1128/JVI.76.19.10020-10023.2002  1
2002 Wyner YM, Johnson SE, Stumpf RM, Desalle R. Genetic assessment of a white-collared x red-fronted lemur hybrid zone at Andringitra, Madagascar. American Journal of Primatology. 57: 51-66. PMID 12111681 DOI: 10.1002/ajp.10033  1
2002 Chiu JC, Brenner ED, DeSalle R, Nitabach MN, Holmes TC, Coruzzi GM. Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana. Molecular Biology and Evolution. 19: 1066-82. PMID 12082126  1
2002 Borchers MT, Ansay T, DeSalle R, Daugherty BL, Shen H, Metzger M, Lee NA, Lee JJ. In vitro assessment of chemokine receptor-ligand interactions mediating mouse eosinophil migration. Journal of Leukocyte Biology. 71: 1033-41. PMID 12050190  1
2002 Zilversmit M, O'Grady P, Desalle R. Shallow genomics, phylogenetics, and evolution in the family Drosophilidae. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 512-23. PMID 11928503  1
2002 Bang R, Schultz TR, DeSalle R. Development, homology and systematics. Exs. 175-86. PMID 11924496  1
2002 Giribet G, DeSalle R, Wheeler WC. 'Pluralism' and the aims of phylogenetic research. Exs. 141-6. PMID 11924492  1
2002 Birnbaum K, Benfey PN, Peters CM, Desalle R. MANAGEDPOP: A computer simulation to project allelic diversity in managed populations with overlapping generations Molecular Ecology Notes. 2: 615-617. DOI: 10.1046/j.1471-8286.2002.00284.x  1
2002 Schierwater B, DeSalle R. Evolution and development special issue Molecular Phylogenetics and Evolution. 24: 343-344. DOI: 10.1016/S1055-7903(02)00262-2  1
2002 Birstein VJ, Doukakis P, DeSalle R. Molecular phylogeny of Acipenseridae: Nonmonophyly of Scaphirhynchinae Copeia. 287-301.  1
2001 Baker RH, Wilkinson GS, DeSalle R. Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae). Systematic Biology. 50: 87-105. PMID 12116597  1
2001 Specht CD, Kress WJ, Stevenson DW, DeSalle R. A molecular phylogeny of Costaceae (Zingiberales). Molecular Phylogenetics and Evolution. 21: 333-45. PMID 11741377 DOI: 10.1006/mpev.2001.1029  1
2001 O'Grady PM, Baker RH, Durando CM, Etges WJ, DeSalle R. Polytene chromosomes as indicators of phylogeny in several species groups of Drosophila. Bmc Evolutionary Biology. 1: 6. PMID 11696235 DOI: 10.1186/1471-2148-1-6  1
2001 Kachlany SC, Planet PJ, DeSalle R, Fine DH, Figurski DH. Genes for tight adherence of Actinobacillus actinomycetemcomitans: from plaque to plague to pond scum. Trends in Microbiology. 9: 429-37. PMID 11553455 DOI: 10.1016/S0966-842X(01)02161-8  1
2001 Schierwater B, Desalle R. Current problems with the zootype and the early evolution of Hox genes. The Journal of Experimental Zoology. 291: 169-74. PMID 11479915 DOI: 10.1002/jez.1066  1
2001 Planet PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE. Systematic analysis of DNA microarray data: Ordering and interpreting patterns of gene expression Genome Research. 11: 1149-1155. PMID 11435396 DOI: 10.1101/gr.187601  1
2001 Lacombe B, Becker D, Hedrich R, DeSalle R, Hollmann M, Kwak JM, Schroeder JI, Le Novère N, Nam HG, Spalding EP, Tester M, Turano FJ, Chiu J, Coruzzi G. The identity of plant glutamate receptors. Science (New York, N.Y.). 292: 1486-7. PMID 11379626  1
2001 Kachlany SC, Planet PJ, Desalle R, Fine DH, Figurski DH, Kaplan JB. flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans. Molecular Microbiology. 40: 542-54. PMID 11359562 DOI: 10.1046/j.1365-2958.2001.02422.x  1
2001 Greenwood AD, Lee F, Capelli C, DeSalle R, Tikhonov A, Marx PA, MacPhee RD. Evolution of endogenous retrovirus-like elements of the woolly mammoth (Mammuthus primigenius) and its relatives. Molecular Biology and Evolution. 18: 840-7. PMID 11319267  1
2001 Planet PJ, Kachlany SC, DeSalle R, Figurski DH. Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification. Proceedings of the National Academy of Sciences of the United States of America. 98: 2503-8. PMID 11226268 DOI: 10.1073/pnas.051436598  1
2001 Russello M, Calcagnotto D, DeSalle R, Amato G. Characterization of microsatellite loci in the endangered St. Vincent Parrot, Amazona guildingii Molecular Ecology Notes. 1: 162-164. DOI: 10.1046/j.1471-8278.2001.00061.x  1
2001 Craig SF, D'Amato ME, Harley M, Bishop J, Hughes R, Carvalho GR. Isolation and characterization of microsatellites in the bryozoan Crisia denticulata Molecular Ecology Notes. 1: 281-282. DOI: 10.1046/j.1471-8278  1
2000 Thornton JW, DeSalle R. A new method to localize and test the significance of incongruence: detecting domain shuffling in the nuclear receptor superfamily. Systematic Biology. 49: 183-201. PMID 12118404  1
2000 Bang R, DeSalle R, Wheeler W. Transformationalism, taxism, and developmental biology in systematics. Systematic Biology. 49: 19-27. PMID 12116480  1
2000 Thornton JW, DeSalle R. Gene family evolution and homology: genomics meets phylogenetics. Annual Review of Genomics and Human Genetics. 1: 41-73. PMID 11701624 DOI: 10.1146/annurev.genom.1.1.41  1
2000 Jacobs DK, Wray CG, Wedeen CJ, Kostriken R, DeSalle R, Staton JL, Gates RD, Lindberg DR. Molluscan engrailed expression, serial organization, and shell evolution. Evolution & Development. 2: 340-7. PMID 11256378 DOI: 10.1046/j.1525-142X.2000.00077.x  1
2000 Rosenbaum HC, Brownell RL, Brown MW, Schaeff C, Portway V, White BN, Malik S, Pastene LA, Patenaude NJ, Baker CS, Goto M, Best PB, Clapham PJ, Hamilton P, Moore M, ... ... DeSalle R, et al. World-wide genetic differentiation of Eubalaena: questioning the number of right whale species. Molecular Ecology. 9: 1793-802. PMID 11091315 DOI: 10.1046/j.1365-294X.2000.01066.x  1
2000 Kachlany SC, Planet PJ, Bhattacharjee MK, Kollia E, DeSalle R, Fine DH, Figurski DH. Nonspecific adherence by Actinobacillus actinomycetemcomitans requires genes widespread in bacteria and archaea. Journal of Bacteriology. 182: 6169-76. PMID 11029439 DOI: 10.1128/JB.182.21.6169-6176.2000  1
2000 Durando CM, Baker RH, Etges WJ, Heed WB, Wasserman M, DeSalle R. Phylogenetic analysis of the repleta species group of the genus Drosophila using multiple sources of characters. Molecular Phylogenetics and Evolution. 16: 296-307. PMID 10942616 DOI: 10.1006/mpev.2000.0824  1
2000 Wyner Y, Desalle R, Absher R. Phylogeny and character behavior in the family Lemuridae Molecular Phylogenetics and Evolution. 15: 124-134. PMID 10764540 DOI: 10.1006/mpev.1999.0723  1
2000 O'Grady PM, DeSalle R. How the fruit fly changed (some of) its spots. Current Biology : Cb. 10: R75-7. PMID 10662660  1
2000 Rosenbaum HC, Egan MG, Clapham PJ, Brownell RL, Malik S, Brown MW, White BN, Walsh P, Desalle R. Utility of North Atlantic right whale museum specimens for assessing changes in genetic diversity Conservation Biology. 14: 1837-1842. DOI: 10.1046/j.1523-1739.2000.99310.x  1
2000 Goldstein PZ, Desalle R, Amato G, Vogler AP. Conservation genetics at the species boundary Conservation Biology. 14: 120-131. DOI: 10.1046/j.1523-1739.2000.98122.x  1
2000 Yudell M, Desalle R. Essay review: Sociobiology: Twenty-Five years later Journal of the History of Biology. 33: 577-584. DOI: 10.1023/A:1004845822189  1
2000 Goldstein PZ, DeSalle R. Phylogenetic species, nested hierarchies, and character fixation Cladistics. 16: 364-384. DOI: 10.1006/clad.2000.0141  1
2000 Birstein VJ, Doukakis P, DeSalle R. Polyphyly of mtDNA lineages in the Russian sturgeon, Acipenser gueldenstaedtii: Forensic and evolutionary implications Conservation Genetics. 1: 81-88.  1
2000 Doukakis P, Birstein VJ, DeSalle R, Ludwig AN, Ludwig A, Machordom A, Almodóvar A, Elvira B. Failure to confirm previous identification of two putative museum specimens of the Atlantic sturgeon, Acipenser sturio, as the Adriatic sturgeon, A. naccarii Marine Biology. 136: 373-377.  1
1999 Doukakis P, Birstein VJ, Ruban GI, Desalle R. Molecular genetic analysis among subspecies of two Eurasian sturgeon species, Acipenser baerii and A. stellatus. Molecular Ecology. 8: S117-27. PMID 10703555  0.76
1999 Wyner YM, Amato G, Desalle R. Captive breeding, reintroduction, and the conservation genetics of black and white ruffed lemurs, Varecia variegata variegata. Molecular Ecology. 8: S107-15. PMID 10703554  1
1999 Chiu J, DeSalle R, Lam HM, Meisel L, Coruzzi G. Molecular evolution of glutamate receptors: A primitive signaling mechanism that existed before plants and animals diverged Molecular Biology and Evolution. 16: 826-838. PMID 10368960  1
1999 Stark J, Bonacum J, Remsen J, DeSalle R. The evolution and development of dipteran wing veins: A systematic approach Annual Review of Entomology. 44: 97-129. PMID 9990717 DOI: 10.1146/annurev.ento.44.1.97  1
1998 Baker RH, Yu X, DeSalle R. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Molecular Phylogenetics and Evolution. 9: 427-36. PMID 9667991 DOI: 10.1006/mpev.1998.0519  1
1997 Baker RH, DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Systematic Biology. 46: 654-73. PMID 11975337  1
1997 Gatesy J, Amato G, Vrba E, Schaller G, DeSalle R. A cladistic analysis of mitochondrial ribosomal DNA from the Bovidae. Molecular Phylogenetics and Evolution. 7: 303-19. PMID 9187090 DOI: 10.1006/mpev.1997.0402  1
1995 Wheeler WC, Gatesy J, DeSalle R. Elision: a method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites. Molecular Phylogenetics and Evolution. 4: 1-9. PMID 7620631 DOI: 10.1006/mpev.1995.1001  1
1994 Gatesy J, Hayashi C, DeSalle R, Vrba E. RATE LIMITS FOR MISPAIRING AND COMPENSATORY CHANGE: THE MITOCHONDRIAL RIBOSOMAL DNA OF ANTELOPES. Evolution; International Journal of Organic Evolution. 48: 188-196. PMID 28567784 DOI: 10.1111/j.1558-5646.1994.tb01305.x  0.8
1993 Vogler AP, DeSalle R. PHYLOGEOGRAPHIC PATTERNS IN COASTAL NORTH AMERICAN TIGER BEETLES (CICINDELA DORSALIS SAY) INFERRED FROM MITOCHONDRIAL DNA SEQUENCES. Evolution; International Journal of Organic Evolution. 47: 1192-1202. PMID 28564287 DOI: 10.1111/j.1558-5646.1993.tb02146.x  0.36
1993 Gatesy J, DeSalle R, Wheeler W. Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Molecular Phylogenetics and Evolution. 2: 152-7. PMID 8025721 DOI: 10.1006/mpev.1993.1015  1
1992 Gatesy J, Yelon D, DeSalle R, Vrba ES. Phylogeny of the Bovidae (Artiodactyla, Mammalia), based on mitochondrial ribosomal DNA sequences. Molecular Biology and Evolution. 9: 433-46. PMID 1584013  1
1992 DeSalle R, Gatesy J, Wheeler W, Grimaldi D. DNA sequences from a fossil termite in Oligo-Miocene amber and their phylogenetic implications. Science (New York, N.Y.). 257: 1933-6. PMID 1411508  1
1992 DeSalle R, Templeton AR. The mtDNA genealogy of closely related Drosophila silvestris. The Journal of Heredity. 83: 211-6. PMID 1352523  1
1992 Hollocher H, Templeton AR, DeSalle R, Johnston JS. The molecular through ecological genetics of abnormal abdomen. IV. Components of genetic variation in a natural population of Drosophila mercatorum. Genetics. 130: 355-66. PMID 1311698  1
1991 Spofford JB, DeSalle R. Nucleolus organizer-suppressed position-effect variegation in Drosophila melanogaster. Genetical Research. 57: 245-55. PMID 1909677  1
1988 DeSalle R, Templeton AR. FOUNDER EFFECTS AND THE RATE OF MITOCHONDRIAL DNA EVOLUTION IN HAWAIIAN DROSOPHILA. Evolution; International Journal of Organic Evolution. 42: 1076-1084. PMID 28581167 DOI: 10.1111/j.1558-5646.1988.tb02525.x  1
1987 DeSalle R, Freedman T, Prager EM, Wilson AC. Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila. Journal of Molecular Evolution. 26: 157-64. PMID 3125333 DOI: 10.1007/BF02111289  1
1986 DeSalle R, Giddings LV, Templeton AR. Mitochondrial DNA variability in natural populations of Hawaiian Drosophila. I. Methods and levels of variability in D. silvestris and D. heteroneura populations. Heredity. 56: 75-85. PMID 3003012  1
1986 DeSalle R, Templeton AR. The molecular through ecological genetics of abnormal abdomen. III. Tissue-specific differential replication of ribosomal genes modulates the abnormal abdomen phenotype in Drosophila mercatorum. Genetics. 112: 877-86. PMID 2420683  1
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