Masatoshi Nei - Publications

Affiliations: 
1972-1990 University of Texas, Houston, Houston, TX, United States 
 1990- Pennsylvania State University, State College, PA, United States 
Area:
evolutionary biology
Website:
https://news.psu.edu/story/280143/2013/06/25/academics/kyoto-prize-awarded-penn-states-masatoshi-nei

175 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Katsura Y, Nei M. The reproducibility of an inferred tree and the diploidization of gene segregation after genome duplication. Genome Biology and Evolution. PMID 31950994 DOI: 10.1093/gbe/evz272  0.4
2017 Katsura Y, Stanley CE, Kumar S, Nei M. The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data. Molecular Biology and Evolution. PMID 28100791 DOI: 10.1093/molbev/msw272  1
2016 Yoshida R, Nei M. Efficiencies of the NJp, maximum likelihood, and Bayesian methods of phylogenetic construction for compositional and non-compositional genes. Molecular Biology and Evolution. PMID 26929244 DOI: 10.1093/molbev/msw042  1
2015 Kang JY, Wu C, Tracy J, Lorenzo M, Evans J, Nei M, Skidmore C, Mintzer S, Sharan AD, Sperling MR. Laser interstitial thermal therapy for medically intractable mesial temporal lobe epilepsy. Epilepsia. PMID 26697969 DOI: 10.1111/epi.13284  0.36
2015 Asadi-Pooya AA, Nei M, Sperling MR. Seasonality of birth in patients with temporal lobe epilepsy. Acta Neurologica Scandinavica. PMID 26392391 DOI: 10.1111/ane.12508  0.36
2015 Asadi-Pooya AA, Nei M, Sharan A, Sperling MR. Type of preoperative aura may predict postsurgical outcome in patients with temporal lobe epilepsy and mesial temporal sclerosis. Epilepsy & Behavior : E&B. 50: 98-100. PMID 26209944 DOI: 10.1016/j.yebeh.2015.06.041  0.36
2014 Nei M. My memory of Walter Fitch (1929-2011) and starting molecular biology and evolution. Molecular Biology and Evolution. 31: 1329-32. PMID 24723418 DOI: 10.1093/molbev/msu133  1
2014 Nei M, Ngo L, Sirven JI, Sperling MR. Ketogenic diet in adolescents and adults with epilepsy. Seizure. 23: 439-42. PMID 24675110 DOI: 10.1016/j.seizure.2014.02.015  0.36
2014 Takezaki N, Nei M, Tamura K. POPTREEW: web version of POPTREE for constructing population trees from allele frequency data and computing some other quantities. Molecular Biology and Evolution. 31: 1622-4. PMID 24603277 DOI: 10.1093/molbev/msu093  1
2014 Zhang Z, Klein J, Nei M. Evolution of the sex-lethal gene in insects and origin of the sex-determination system in Drosophila. Journal of Molecular Evolution. 78: 50-65. PMID 24271947 DOI: 10.1007/s00239-013-9599-3  1
2013 Miura S, Zhang Z, Nei M. Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations. Proceedings of the National Academy of Sciences of the United States of America. 110: 10676-81. PMID 23754436 DOI: 10.1073/pnas.1308462110  1
2013 Wang SP, Mintzer S, Skidmore CT, Zhan T, Stuckert E, Nei M, Sperling MR. Seizure recurrence and remission after switching antiepileptic drugs. Epilepsia. 54: 187-93. PMID 22931161 DOI: 10.1111/j.1528-1167.2012.03652.x  0.36
2012 Nei M, Sperling MR, Mintzer S, Ho RT. Long-term cardiac rhythm and repolarization abnormalities in refractory focal and generalized epilepsy. Epilepsia. 53: e137-40. PMID 22709423 DOI: 10.1111/j.1528-1167.2012.03561.x  0.36
2012 Nozawa M, Miura S, Nei M. Origins and evolution of microRNA genes in plant species. Genome Biology and Evolution. 4: 230-9. PMID 22223755 DOI: 10.1093/gbe/evs002  1
2012 LoPinto-Khoury C, Sperling MR, Skidmore C, Nei M, Evans J, Sharan A, Mintzer S. Surgical outcome in PET-positive, MRI-negative patients with temporal lobe epilepsy. Epilepsia. 53: 342-8. PMID 22192050 DOI: 10.1111/j.1528-1167.2011.03359.x  0.36
2011 Nei M, Nozawa M. Roles of mutation and selection in speciation: from Hugo de Vries to the modern genomic era. Genome Biology and Evolution. 3: 812-29. PMID 21903731 DOI: 10.1093/gbe/evr028  1
2011 Zarroli K, Tracy JI, Nei M, Sharan A, Sperling MR. Employment after anterior temporal lobectomy. Epilepsia. 52: 925-31. PMID 21561447 DOI: 10.1111/j.1528-1167.2011.03098.x  0.36
2011 Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution. 28: 2731-9. PMID 21546353 DOI: 10.1093/molbev/msr121  1
2011 Miura S, Nozawa M, Nei M. Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species. Genome Biology and Evolution. 3: 129-39. PMID 21187351 DOI: 10.1093/gbe/evq088  1
2010 Buckingham SE, Chervoneva I, Sharan A, Zangaladze A, Mintzer S, Skidmore C, Nei M, Evans J, Pequignot E, Sperling MR. Latency to first seizure after temporal lobectomy predicts long-term outcome. Epilepsia. 51: 1987-93. PMID 21069902 DOI: 10.1111/j.1528-1167.2010.02721.x  0.36
2010 Nozawa M, Miura S, Nei M. Origins and evolution of microRNA genes in Drosophila species. Genome Biology and Evolution. 2: 180-9. PMID 20624724 DOI: 10.1093/gbe/evq009  1
2010 Nei M, Suzuki Y, Nozawa M. The neutral theory of molecular evolution in the genomic era. Annual Review of Genomics and Human Genetics. 11: 265-89. PMID 20565254 DOI: 10.1146/annurev-genom-082908-150129  1
2010 Nozawa M, Suzuki Y, Nei M. Is positive selection responsible for the evolution of a duplicate UV-sensitive opsin gene in Heliconius butterflies? Proceedings of the National Academy of Sciences of the United States of America. 107: E96; author reply E9. PMID 20457891 DOI: 10.1073/pnas.1003657107  1
2010 Takezaki N, Nei M, Tamura K. POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Molecular Biology and Evolution. 27: 747-52. PMID 20022889 DOI: 10.1093/molbev/msp312  1
2010 Das S, Mohamedy U, Hirano M, Nei M, Nikolaidis N. Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications. Molecular Biology and Evolution. 27: 113-20. PMID 19744999 DOI: 10.1093/molbev/msp212  1
2009 Das S, Nikolaidis N, Nei M. Genomic organization and evolution of immunoglobulin kappa gene enhancers and kappa deleting element in mammals. Molecular Immunology. 46: 3171-7. PMID 19560204 DOI: 10.1016/j.molimm.2009.05.180  1
2009 Takezaki N, Nei M. Genomic drift and evolution of microsatellite DNAs in human populations. Molecular Biology and Evolution. 26: 1835-40. PMID 19406937 DOI: 10.1093/molbev/msp091  1
2009 Nozawa M, Suzuki Y, Nei M. Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proceedings of the National Academy of Sciences of the United States of America. 106: 6700-5. PMID 19339501 DOI: 10.1073/pnas.0901855106  1
2009 Xu G, Ma H, Nei M, Kong H. Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proceedings of the National Academy of Sciences of the United States of America. 106: 835-40. PMID 19126682 DOI: 10.1073/pnas.0812043106  1
2009 Nozawa M, Suzuki Y, Nei M. Response to Yang et al.: Problems with Bayesian methods of detecting positive selection at the DNA sequence level Proceedings of the National Academy of Sciences of the United States of America. 106: E96. DOI: 10.1073/pnas.0906089106  1
2008 Nozawa M, Nei M. Genomic drift and copy number variation of chemosensory receptor genes in humans and mice. Cytogenetic and Genome Research. 123: 263-9. PMID 19287163 DOI: 10.1159/000184716  1
2008 Akyol M, Greaves M, Eldredge N, Persson PE, Gowaty PA, Nei M, Lynch M, Kutschera U, Nesse R, Serageldin I. Darwin 200: Great expectations Nature. 456: 317-318. PMID 19020598 DOI: 10.1038/456317a  1
2008 Nei M, Niimura Y, Nozawa M. The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity. Nature Reviews. Genetics. 9: 951-63. PMID 19002141 DOI: 10.1038/nrg2480  1
2008 Das S, Nikolaidis N, Klein J, Nei M. Evolutionary redefinition of immunoglobulin light chain isotypes in tetrapods using molecular markers. Proceedings of the National Academy of Sciences of the United States of America. 105: 16647-52. PMID 18940927 DOI: 10.1073/pnas.0808800105  1
2008 Chalkia D, Nikolaidis N, Makalowski W, Klein J, Nei M. Origins and evolution of the formin multigene family that is involved in the formation of actin filaments. Molecular Biology and Evolution. 25: 2717-33. PMID 18840602 DOI: 10.1093/molbev/msn215  1
2008 Lin Z, Ma H, Nei M. Ultraconserved coding regions outside the homeobox of mammalian Hox genes. Bmc Evolutionary Biology. 8: 260. PMID 18816392 DOI: 10.1186/1471-2148-8-260  1
2008 Asadi-Pooya AA, Nei M, Sharan AD, Mintzer S, Zangaladze A, Evans JG, Skidmore C, Sperling MR. Antiepileptic drugs and relapse after epilepsy surgery. Epileptic Disorders : International Epilepsy Journal With Videotape. 10: 193-8. PMID 18782687 DOI: 10.1684/epd.2008.0198  0.36
2008 Asadi-Pooya AA, Sharan A, Nei M, Sperling MR. Corpus callosotomy. Epilepsy & Behavior : E&B. 13: 271-8. PMID 18539083 DOI: 10.1016/j.yebeh.2008.04.020  0.36
2008 Zangaladze A, Nei M, Liporace JD, Sperling MR. Characteristics and clinical significance of subclinical seizures. Epilepsia. 49: 2016-21. PMID 18503561 DOI: 10.1111/j.1528-1167.2008.01672.x  0.36
2008 Kumar S, Nei M, Dudley J, Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics. 9: 299-306. PMID 18417537 DOI: 10.1093/bib/bbn017  1
2008 Takezaki N, Nei M. Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA. Genetics. 178: 385-92. PMID 18202381 DOI: 10.1534/genetics.107.081505  1
2008 Das S, Nozawa M, Klein J, Nei M. Evolutionary dynamics of the immunoglobulin heavy chain variable region genes in vertebrates. Immunogenetics. 60: 47-55. PMID 18196235 DOI: 10.1007/s00251-007-0270-2  1
2008 Sperling MR, Nei M, Zangaladze A, Sharan AD, Mintzer SE, Skidmore C, Evans JG, Schilling CA, Asadi-Pooya AA. Prognosis after late relapse following epilepsy surgery. Epilepsy Research. 78: 77-81. PMID 18077135 DOI: 10.1016/j.eplepsyres.2007.10.011  0.36
2007 Nozawa M, Kawahara Y, Nei M. Genomic drift and copy number variation of sensory receptor genes in humans. Proceedings of the National Academy of Sciences of the United States of America. 104: 20421-6. PMID 18077390 DOI: 10.1073/pnas.0709956104  1
2007 Lin Z, Nei M, Ma H. The origins and early evolution of DNA mismatch repair genes--multiple horizontal gene transfers and co-evolution. Nucleic Acids Research. 35: 7591-603. PMID 17965091 DOI: 10.1093/nar/gkm921  1
2007 Niimura Y, Nei M. Extensive gains and losses of olfactory receptor genes in mammalian evolution. Plos One. 2: e708. PMID 17684554 DOI: 10.1371/journal.pone.0000708  1
2007 Nei M. The new mutation theory of phenotypic evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 12235-42. PMID 17640887 DOI: 10.1073/pnas.0703349104  1
2007 Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution. 24: 1596-9. PMID 17488738 DOI: 10.1093/molbev/msm092  1
2007 Nozawa M, Nei M. Evolutionary dynamics of olfactory receptor genes in Drosophila species. Proceedings of the National Academy of Sciences of the United States of America. 104: 7122-7. PMID 17438280 DOI: 10.1073/pnas.0702133104  1
2006 Jenssen S, Sperling MR, Tracy JI, Nei M, Joyce L, David G, O'Connor M. Corpus callosotomy in refractory idiopathic generalized epilepsy. Seizure. 15: 621-9. PMID 17067824 DOI: 10.1016/j.seizure.2006.09.003  0.36
2006 Lin Z, Kong H, Nei M, Ma H. Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer. Proceedings of the National Academy of Sciences of the United States of America. 103: 10328-33. PMID 16798872 DOI: 10.1073/pnas.0604232103  1
2006 Niimura Y, Nei M. Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. Journal of Human Genetics. 51: 505-17. PMID 16607462 DOI: 10.1007/s10038-006-0391-8  1
2006 Hao L, Klein J, Nei M. Heterogeneous but conserved natural killer receptor gene complexes in four major orders of mammals. Proceedings of the National Academy of Sciences of the United States of America. 103: 3192-7. PMID 16492762 DOI: 10.1073/pnas.0511280103  1
2006 Nei M, O'Connor M, Liporace J, Sperling MR. Refractory generalized seizures: response to corpus callosotomy and vagal nerve stimulation. Epilepsia. 47: 115-22. PMID 16417539 DOI: 10.1111/j.1528-1167.2006.00377.x  0.36
2006 Jenssen S, Liporace J, Nei M, O'connor MJ, Sperling MR. Value of non-invasive testing when there are independent bitemporal seizures in the scalp EEG. Epilepsy Research. 68: 115-22. PMID 16386405 DOI: 10.1016/j.eplepsyres.2005.10.007  0.36
2005 Sperling MR, Harris A, Nei M, Liporace JD, O'Connor MJ. Mortality after epilepsy surgery. Epilepsia. 46: 49-53. PMID 16393181 DOI: 10.1111/j.1528-1167.2005.00410.x  0.36
2005 Nei M, Rooney AP. Concerted and birth-and-death evolution of multigene families. Annual Review of Genetics. 39: 121-52. PMID 16285855 DOI: 10.1146/annurev.genet.39.073003.112240  1
2005 Nei M. Selectionism and neutralism in molecular evolution. Molecular Biology and Evolution. 22: 2318-42. PMID 16120807 DOI: 10.1093/molbev/msi242  1
2005 Nam J, Nei M. Evolutionary change of the numbers of homeobox genes in bilateral animals. Molecular Biology and Evolution. 22: 2386-94. PMID 16079247 DOI: 10.1093/molbev/msi229  1
2005 Nei M. Bottlenecks, genetic polymorphism and speciation. Genetics. 170: 1-4. PMID 15914771  1
2005 Niimura Y, Nei M. Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proceedings of the National Academy of Sciences of the United States of America. 102: 6039-44. PMID 15824306 DOI: 10.1073/pnas.0501922102  1
2005 Nikolaidis N, Makalowska I, Chalkia D, Makalowski W, Klein J, Nei M. Origin and evolution of the chicken leukocyte receptor complex. Proceedings of the National Academy of Sciences of the United States of America. 102: 4057-62. PMID 15753291 DOI: 10.1073/pnas.0501040102  1
2005 Hao L, Nei M. Rapid expansion of killer cell immunoglobulin-like receptor genes in primates and their coevolution with MHC Class I genes. Gene. 347: 149-59. PMID 15733532 DOI: 10.1016/j.gene.2004.12.012  1
2005 Niimura Y, Nei M. Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice. Gene. 346: 13-21. PMID 15716120 DOI: 10.1016/j.gene.2004.09.025  1
2005 Niimura Y, Nei M. Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages. Gene. 346: 23-8. PMID 15716099 DOI: 10.1016/j.gene.2004.09.027  1
2005 Glazko G, Veeramachaneni V, Nei M, Maka?owski W. Eighty percent of proteins are different between humans and chimpanzees. Gene. 346: 215-9. PMID 15716009 DOI: 10.1016/j.gene.2004.11.003  1
2005 Nikolaidis N, Klein J, Nei M. Origin and evolution of the Ig-like domains present in mammalian leukocyte receptors: insights from chicken, frog, and fish homologues. Immunogenetics. 57: 151-7. PMID 15702330 DOI: 10.1007/s00251-004-0764-0  1
2005 Nam J, Kaufmann K, Theissen G, Nei M. A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes. Nucleic Acids Research. 33: e12. PMID 15659573 DOI: 10.1093/nar/gni003  0.88
2004 Hao L, Nei M. Genomic organization and evolutionary analysis of Ly49 genes encoding the rodent natural killer cell receptors: rapid evolution by repeated gene duplication. Immunogenetics. 56: 343-54. PMID 15316687 DOI: 10.1007/s00251-004-0703-0  1
2004 Kumar S, Tamura K, Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics. 5: 150-63. PMID 15260895  1
2004 Tamura K, Nei M, Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences of the United States of America. 101: 11030-5. PMID 15258291 DOI: 10.1073/pnas.0404206101  1
2004 Nei M, Ho RT, Abou-Khalil BW, Drislane FW, Liporace J, Romeo A, Sperling MR. EEG and ECG in sudden unexplained death in epilepsy. Epilepsia. 45: 338-45. PMID 15030496 DOI: 10.1111/j.0013-9580.2004.05503.x  0.36
2004 Suzuki Y, Nei M. False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Molecular Biology and Evolution. 21: 914-21. PMID 15014169 DOI: 10.1093/molbev/msh098  1
2004 Nam J, Kim J, Lee S, An G, Ma H, Nei M. Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 101: 1910-5. PMID 14764899 DOI: 10.1073/pnas.0308430100  1
2004 Nikolaidis N, Nei M. Concerted and nonconcerted evolution of the Hsp70 gene superfamily in two sibling species of nematodes. Molecular Biology and Evolution. 21: 498-505. PMID 14694072 DOI: 10.1093/molbev/msh041  1
2003 Misawa K, Nei M. Reanalysis of Murphy et al.'s data gives various mammalian phylogenies and suggests overcredibility of Bayesian trees. Journal of Molecular Evolution. 57: S290-6. PMID 15008427 DOI: 10.1007/s00239-003-0039-7  1
2003 Niimura Y, Nei M. Evolution of olfactory receptor genes in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 100: 12235-40. PMID 14507991 DOI: 10.1073/pnas.1635157100  1
2003 Nam J, dePamphilis CW, Ma H, Nei M. Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Molecular Biology and Evolution. 20: 1435-47. PMID 12777513 DOI: 10.1093/molbev/msg152  1
2003 Nei M. Genome evolution: let's stick together. Heredity. 90: 411-2. PMID 12764410 DOI: 10.1038/sj.hdy.6800287  1
2003 Piontkivska H, Nei M. Birth-and-death evolution in primate MHC class I genes: divergence time estimates. Molecular Biology and Evolution. 20: 601-9. PMID 12679545 DOI: 10.1093/molbev/msg064  1
2003 Glazko GV, Nei M. Estimation of divergence times for major lineages of primate species. Molecular Biology and Evolution. 20: 424-34. PMID 12644563 DOI: 10.1093/molbev/msg050  1
2002 Suzuki Y, Glazko GV, Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceedings of the National Academy of Sciences of the United States of America. 99: 16138-43. PMID 12451182 DOI: 10.1073/pnas.212646199  1
2002 Suzuki Y, Nei M. Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites. Molecular Biology and Evolution. 19: 1865-9. PMID 12411595  1
2002 Itoh T, Martin W, Nei M. Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proceedings of the National Academy of Sciences of the United States of America. 99: 12944-8. PMID 12235368 DOI: 10.1073/pnas.192449699  1
2002 Nei M, Glazko GV. The Wilhelmine E. Key 2001 Invitational Lecture. Estimation of divergence times for a few mammalian and several primate species. The Journal of Heredity. 93: 157-64. PMID 12195029  1
2002 Piontkivska H, Rooney AP, Nei M. Purifying selection and birth-and-death evolution in the histone H4 gene family. Molecular Biology and Evolution. 19: 689-97. PMID 11961102  1
2002 Suzuki Y, Nei M. Origin and evolution of influenza virus hemagglutinin genes. Molecular Biology and Evolution. 19: 501-9. PMID 11919291  1
2002 Su C, Nguyen VK, Nei M. Adaptive evolution of variable region genes encoding an unusual type of immunoglobulin in camelids. Molecular Biology and Evolution. 19: 205-15. PMID 11861879  1
2002 Rooney AP, Piontkivska H, Nei M. Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family. Molecular Biology and Evolution. 19: 68-75. PMID 11752191  1
2001 Kumar S, Tamura K, Jakobsen IB, Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics (Oxford, England). 17: 1244-5. PMID 11751241  1
2001 Suzuki Y, Nei M. Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites. Molecular Biology and Evolution. 18: 2179-85. PMID 11719567  1
2001 Suzuki Y, Gojobori T, Nei M. ADAPTSITE: detecting natural selection at single amino acid sites. Bioinformatics (Oxford, England). 17: 660-1. PMID 11448887 DOI: 10.1093/bioinformatics/17.7.660  1
2001 Su C, Nei M. Evolutionary dynamics of the T-cell receptor VB gene family as inferred from the human and mouse genomic sequences. Molecular Biology and Evolution. 18: 503-13. PMID 11264401 DOI: 10.1093/oxfordjournals.molbev.a003829  1
2001 Nei M, Xu P, Glazko G. Estimation of divergence times from multiprotein sequences for a few mammalian species and several distantly related organisms. Proceedings of the National Academy of Sciences of the United States of America. 98: 2497-502. PMID 11226267 DOI: 10.1073/pnas.051611498  1
2000 Nei M, Rogozin IB, Piontkivska H. Purifying selection and birth-and-death evolution in the ubiquitin gene family. Proceedings of the National Academy of Sciences of the United States of America. 97: 10866-71. PMID 11005860  1
2000 Zhang J, Nei M. Positive selection in the evolution of mammalian interleukin-2 genes. Molecular Biology and Evolution. 17: 1413-6. PMID 10958857  1
2000 Takahashi K, Nei M. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Molecular Biology and Evolution. 17: 1251-8. PMID 10908645  1
2000 Takahashi K, Rooney AP, Nei M. Origins and divergence times of mammalian class II MHC gene clusters. The Journal of Heredity. 91: 198-204. PMID 10833044  1
2000 Nei M, Ho RT, Sperling MR. EKG abnormalities during partial seizures in refractory epilepsy. Epilepsia. 41: 542-8. PMID 10802759  0.36
2000 Ota T, Sitnikova T, Nei M. Evolution of vertebrate immunoglobulin variable gene segments. Current Topics in Microbiology and Immunology. 248: 221-45. PMID 10793480  1
2000 Rooney AP, Zhang J, Nei M. An unusual form of purifying selection in a sperm protein. Molecular Biology and Evolution. 17: 278-83. PMID 10677850  1
2000 O'Brien SJ, Andersson L, Angus R, Bloom SE, Bowling A, Collier GE, Copeland N, Crittenden L, Davisson MT, Gabay-Laughnan S, Gustafson JP, Hamrick JL, Honeycutt R, Jauhar PP, Knap HT, ... ... Nei M, et al. Milestones Journal of Heredity. 91: iii.  1
1999 Su C, Jakobsen I, Gu X, Nei M. Diversity and evolution of T-cell receptor variable region genes in mammals and birds. Immunogenetics. 50: 301-8. PMID 10630294 DOI: 10.1007/s002510050606  1
1999 Su C, Nei M. Fifty-million-year-old polymorphism at an immunoglobulin variable region gene locus in the rabbit evolutionary lineage. Proceedings of the National Academy of Sciences of the United States of America. 96: 9710-5. PMID 10449759 DOI: 10.1073/pnas.96.17.9710  1
1999 Gu X, Nei M. Locus specificity of polymorphic alleles and evolution by a birth-and-death process in mammalian MHC genes. Molecular Biology and Evolution. 16: 147-56. PMID 10028282  1
1999 Nei M, Lee JM, Shanker VL, Sperling MR. The EEG and prognosis in status epilepticus. Epilepsia. 40: 157-63. PMID 9952261  0.36
1998 Nei M, Zhang J. Molecular origin of species. Science (New York, N.Y.). 282: 1428-9. PMID 9867649  1
1998 Nei M, Kumar S, Takahashi K. The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small. Proceedings of the National Academy of Sciences of the United States of America. 95: 12390-7. PMID 9770497 DOI: 10.1073/pnas.95.21.12390  1
1998 Zhang J, Rosenberg HF, Nei M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proceedings of the National Academy of Sciences of the United States of America. 95: 3708-13. PMID 9520431 DOI: 10.1073/pnas.95.7.3708  1
1998 Sitnikova T, Nei M. Evolution of immunoglobulin kappa chain variable region genes in vertebrates. Molecular Biology and Evolution. 15: 50-60. PMID 9491604  1
1997 Zhang J, Kumar S, Nei M. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Molecular Biology and Evolution. 14: 1335-8. PMID 9402743  1
1997 Nei M, Gu X, Sitnikova T. Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proceedings of the National Academy of Sciences of the United States of America. 94: 7799-806. PMID 9223266 DOI: 10.1073/pnas.94.15.7799  1
1997 Nei M, Zhang J, Yokoyama S. Color vision of ancestral organisms of higher primates. Molecular Biology and Evolution. 14: 611-8. PMID 9190062  1
1997 Zhang J, Nei M. Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. Journal of Molecular Evolution. 44: S139-46. PMID 9071022 DOI: 10.1007/PL00000067  1
1996 Nei M. Phylogenetic analysis in molecular evolutionary genetics. Annual Review of Genetics. 30: 371-403. PMID 8982459 DOI: 10.1146/annurev.genet.30.1.371  1
1996 Takezaki N, Nei M. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics. 144: 389-99. PMID 8878702  1
1996 Zhang J, Nei M. Evolution of Antennapedia-class homeobox genes. Genetics. 142: 295-303. PMID 8770606  1
1996 Russo CA, Takezaki N, Nei M. Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. Molecular Biology and Evolution. 13: 525-36. PMID 8742641  1
1996 Nei M, Takezaki N. The root of the phylogenetic tree of human populations. Molecular Biology and Evolution. 13: 170-7. PMID 8583889  1
1995 Yang Z, Kumar S, Nei M. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics. 141: 1641-50. PMID 8601501  1
1995 Ota T, Nei M. Evolution of immunoglobulin VH pseudogenes in chickens Molecular Biology and Evolution. 12: 94-102. PMID 7877500  1
1995 Rzhetsky A, Kumar S, Nei M. Four-cluster analysis: a simple method to test phylogenetic hypotheses. Molecular Biology and Evolution. 12: 163-7. PMID 7877491  1
1995 Rzhetsky A, Nei M. Tests of applicability of several substitution models for DNA sequence data Molecular Biology and Evolution. 12: 131-151. PMID 7877488  1
1995 Nei M, Takezaki N, Sitnikova T. Assessing molecular phylogenies. Science (New York, N.Y.). 267: 253-4; author reply . PMID 7809633  1
1995 Russo CA, Takezaki N, Nei M. Molecular phylogeny and divergence times of drosophilid species. Molecular Biology and Evolution. 12: 391-404. PMID 7739381  1
1995 Sitnikova T, Rzhetsky A, Nei M. Interior-branch and bootstrap tests of phylogenetic trees. Molecular Biology and Evolution. 12: 319-33. PMID 7700156  1
1995 Nei M. Genetic support for the out-of-Africa theory of human evolution. Proceedings of the National Academy of Sciences of the United States of America. 92: 6720-2. PMID 7624309 DOI: 10.1073/pnas.92.15.6720  1
1995 Takezaki N, Rzhetsky A, Nei M. Phylogenetic test of the molecular clock and linearized trees. Molecular Biology and Evolution. 12: 823-33. PMID 7476128  1
1995 Nei M. Motoo Kimura (1924-1994). Molecular Biology and Evolution. 12: 719-22. PMID 7476119  1
1994 Tateno Y, Takezaki N, Nei M. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site Molecular Biology and Evolution. 11: 261-277. PMID 8170367  1
1994 Ota T, Nei M. Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site Molecular Biology and Evolution. 11: 613-619. PMID 8078400  1
1994 Kumar S, Tamura K, Nei M. MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Computer Applications in the Biosciences : Cabios. 10: 189-91. PMID 8019868 DOI: 10.1093/bioinformatics/10.2.189  1
1994 Ota T, Nei M. Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family Molecular Biology and Evolution. 11: 469-482. PMID 8015440  1
1994 Rzhetsky A, Nei M. Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites Journal of Molecular Evolution. 38: 295-299. PMID 8006996 DOI: 10.1007/BF00176091  1
1994 Takezaki N, Nei M. Inconsistency of the maximum parsimony method when the rate of nucleotide substitution is constant Journal of Molecular Evolution. 39: 210-218. PMID 7932784 DOI: 10.1007/BF00163810  1
1994 Rzhetsky A, Nei M. METREE: A program package for inferring and testing minimum-evolution trees Computer Applications in the Biosciences. 10: 409-412. PMID 7804873  1
1994 Hughes AL, Hughes MK, Howell CY, Nei M. Natural selection at the class II major histocompatibility complex loci of mammals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 346: 359-66; discussion 3. PMID 7708830 DOI: 10.1098/rstb.1994.0153  1
1994 Ota T, Nei M. Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites Journal of Molecular Evolution. 38: 642-643. DOI: 10.1007/BF00175885  1
1993 Hughes AL, Nei M. Evolutionary relationships of the classes of major histocompatibility complex genes. Immunogenetics. 37: 337-46. PMID 8428767 DOI: 10.1007/BF00216798  1
1993 Nei M, Roychoudhury AK. Evolutionary relationships of human populations on a global scale Molecular Biology and Evolution. 10: 927-943. PMID 8412653  1
1993 Rzhetsky A, Nei M. Theoretical foundation of the minimum-evolution method of phylogenetic inference Molecular Biology and Evolution. 10: 1073-1095. PMID 8412650  1
1993 Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees Molecular Biology and Evolution. 10: 512-526. PMID 8336541  1
1993 Nei M, Takahata N. Effective population size, genetic diversity, and coalescence time in subdivided populations. Journal of Molecular Evolution. 37: 240-4. PMID 8230248 DOI: 10.1007/BF00175500  1
1993 Nei M, Whittam TS. International Conference on Molecular Evolution: Forward Molecular Biology and Evolution. 10: 1.  1
1992 Hughes AL, Nei M. Maintenance of MHC polymorphism. Nature. 355: 402-3. PMID 1734277 DOI: 10.1038/355402b0  0.96
1992 Hughes AL, Nei M. Models of host-parasite interaction and MHC polymorphism. Genetics. 132: 863-4. PMID 1468636  1
1992 Nei M. Age of the common ancestor of human mitochondrial DNA [1] Molecular Biology and Evolution. 9: 1176-1178. PMID 1435241  1
1992 Rzhetsky A, Nei M. Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference Journal of Molecular Evolution. 35: 367-375. PMID 1404422 DOI: 10.1007/BF00161174  1
1992 Rzhetsky A, Nei M. A simple method for estimating and testing minimum-evolution trees Molecular Biology and Evolution. 9: 945-967.  1
1991 Jin L, Nei M. Relative efficiencies of the maximum-parsimony and distance-matrix methods of phylogeny construction for restriction data Molecular Biology and Evolution. 8: 356-365. PMID 1677154  1
1991 Whittam TS, Nei M. Neutral mutation hypothesis test [11] Nature. 354: 115-116.  1
1990 Takahata N, Nei M. Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci Genetics. 124: 967-978. PMID 2323559  1
1990 Jin L, Nei M. Limitations of the evolutionary parsimony method of phylogenetic analysis Molecular Biology and Evolution. 7: 82-102. PMID 2299983  1
1990 Hughes AL, Ota T, Nei M. Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. Molecular Biology and Evolution. 7: 515-24. PMID 2283951  1
1990 Livshits G, Nei M. Relationships between intrapopulational and interpopulational genetic diversity in man Annals of Human Biology. 17: 501-513. PMID 2281941 DOI: 10.1080/03014469000001272  1
1990 Hughes AL, Nei M. Evolutionary relationships of class II major-histocompatibility-complex genes in mammals. Molecular Biology and Evolution. 7: 491-514. PMID 2126590  1
1990 Nei M, Miller JC. A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data Genetics. 125: 873-879. PMID 1975792  1
1989 Tanaka T, Nei M. Positive Darwinian selection observed at the variable-region genes of immunoglobulins Molecular Biology and Evolution. 6: 447-459. PMID 2796726  1
1989 Hughes AL, Nei M. Ancient interlocus exon exchange in the history of the HLA-A locus. Genetics. 122: 681-6. PMID 2759423  1
1989 Nei M. Genetic relationships of europeans, asians and africans and the origin of modern homo sapiens Human Heredity. 39: 276-281. PMID 2613254 DOI: 10.1159/000153872  1
1989 Nei M, Jin L. Variances of the average numbers of nucleotide substitutions within and between populations Molecular Biology and Evolution. 6: 290-300. PMID 2576093  1
1989 Lu BZ, Nei M. Study on molecular evolution for both variable segments of immunoglobulin heavy chain and T cell receptor Acta Genetica Sinica. 16: 140-150. PMID 2517037  1
1989 Hughes AL, Nei M. Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proceedings of the National Academy of Sciences of the United States of America. 86: 958-62. PMID 2492668  1
1989 Hughes AL, Nei M. Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals. Molecular Biology and Evolution. 6: 559-79. PMID 2484936  1
1988 Hughes AL, Nei M. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature. 335: 167-70. PMID 3412472 DOI: 10.1038/335167a0  1
1988 Sourdis J, Nei M. Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree Molecular Biology and Evolution. 5: 298-311. PMID 3386530  1
1988 Pamilo P, Nei M. Relationship between gene trees and species trees Molecular Biology and Evolution. 5: 568-583. PMID 3193878  1
1988 Nei M. Relative roles of mutation and selection in the maintenance of genetic variability Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 319: 615-629. PMID 2905496  1
1987 Pamilo P, Nei M, Li WH. Accumulation of mutations in sexual and asexual populations Genetical Research. 49: 135-146. PMID 3596234  1
1987 Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees Molecular Biology and Evolution. 4: 406-425. PMID 3447015  1
1986 Varvio SL, Chakraborty R, Nei M. Genetic variation in subdivided populations and conservation genetics Heredity. 57: Pt 2/-. PMID 3781870  1
1986 Gojobori T, Nei M. Relative contributions of germline gene variation and somatic mutation to immunoglobulin diversity in the mouse Molecular Biology and Evolution. 3: 156-167. PMID 3444398 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040387  1
1986 Saitou N, Nei M. The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence Journal of Molecular Evolution. 24: 189-204. PMID 3104615 DOI: 10.1007/BF02099966  1
1973 Kidwell MG, Kidwell JF, Nei M. A case of high rate of spontaneous mutation affecting viability in Drosophila melanogaster. Genetics. 75: 133-53. PMID 4202770  1
1967 Nei M, Kojima KI, Schaffer HE. Frequency changes of new inversions in populations under mutation-selection equilibria. Genetics. 57: 741-50. PMID 6082619  1
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