Joseph C. Pires, Ph.D. - Publications

Affiliations: 
2000 University of Wisconsin, Madison, Madison, WI 
Area:
Phylogenetics, evolution, systematics, plants

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. American Journal of Botany. PMID 29574686 DOI: 10.1002/Ajb2.1040  0.92
2016 McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, dePamphilis CW, Givnish TJ, Pires JC, Stevenson DW, Leebens-Mack JH. A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales. Genome Biology and Evolution. PMID 26988252 DOI: 10.1093/Gbe/Evw060  0.56
2015 Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, ... Pires JC, et al. The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100883 DOI: 10.1073/Pnas.1503926112  0.48
2014 Henriquez CL, Arias T, Pires JC, Croat TB, Schaal BA. Phylogenomics of the plant family Araceae. Molecular Phylogenetics and Evolution. 75: 91-102. PMID 24594061 DOI: 10.1016/J.Ympev.2014.02.017  0.56
2014 Arias T, Beilstein MA, Tang M, McKain MR, Pires JC. Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence. American Journal of Botany. 101: 86-91. PMID 24388963 DOI: 10.3732/Ajb.1300312  0.56
2013 Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC. Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales. Seminars in Cell & Developmental Biology. 24: 320-31. PMID 23466286 DOI: 10.1016/J.Semcdb.2013.02.002  0.56
2012 Seberg O, Petersen G, Davis JI, Pires JC, Stevenson DW, Chase MW, Fay MF, Devey DS, Jørgensen T, Sytsma KJ, Pillon Y. Phylogeny of the Asparagales based on three plastid and two mitochondrial genes. American Journal of Botany. 99: 875-89. PMID 22539521 DOI: 10.3732/Ajb.1100468  0.92
2012 McKain MR, Wickett N, Zhang Y, Ayyampalayam S, McCombie WR, Chase MW, Pires JC, dePamphilis CW, Leebens-Mack J. Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). American Journal of Botany. 99: 397-406. PMID 22301890 DOI: 10.3732/Ajb.1100537  0.4
2011 Raven PH, Chase JM, Pires JC. Introduction to special issue on biodiversity. American Journal of Botany. 98: 333-5. PMID 21613129 DOI: 10.3732/Ajb.1100055  0.44
2010 Givnish TJ, Ames M, McNeal JR, McKain MR, Steele PR, Depamphilis CW, Graham SW, Pires JC, Stevenson DW, Zomlefer WB, Briggs BG, Duvall MR, Moore MJ, Heaney JM, Soltis DE, et al. Assembling the tree of the monocotyledons: Plastome sequence phylogeny and evolution of Poales Annals of the Missouri Botanical Garden. 97: 584-616. DOI: 10.3417/2010023  0.56
2005 Givnish TJ, Pires JC, Graham SW, McPherson MA, Prince LM, Patterson TB, Rai HS, Roalson EH, Evans TM, Hahn WJ, Millam KC, Meerow AW, Molvray M, Kores PJ, O'Brien HE, et al. Repeated evolution of net venation and fleshy fruits among monocots in shaded habitats confirms a priori predictions: evidence from an ndhF phylogeny. Proceedings. Biological Sciences / the Royal Society. 272: 1481-90. PMID 16011923 DOI: 10.1098/Rspb.2005.3067  0.92
2004 Givnish TJ, Millam KC, Evans TM, Hall JC, Pires JC, Berry PE, Sytsma KJ. Ancient vicariance or recent long-distance dispersal? Inferences about phylogeny and South American-African disjunctions in rapateaceae and bromeliaceae based on ndhF sequence data International Journal of Plant Sciences. 165: S35-S54. DOI: 10.1086/421067  0.92
2004 Sytsma KJ, Litt A, Zjhra ML, Pires JC, Nepokroeff M, Conti E, Walker J, Wilson PG. Clades, clocks, and continents: Historical and biogeographical analysis of Myrtaceae, Vochysiaceae, and relatives in the Southern Hemisphere International Journal of Plant Sciences. 165: S85-S105. DOI: 10.1086/421066  0.92
2003 Levin RA, Wagner WL, Hoch PC, Nepokroeff M, Pires JC, Zimmer EA, Sytsma KJ. Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data. American Journal of Botany. 90: 107-15. PMID 21659085 DOI: 10.3732/Ajb.90.1.107  0.92
2003 Bremer B, Bremer K, Chase MW, Reveal JL, Soltis DE, Soltis PS, Stevens PF, Anderberg AA, Fay MF, Goldblatt P, Judd WS, Källersjö M, Kårehed J, Kron KA, Lundberg J, ... ... Pires JC, et al. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II Botanical Journal of the Linnean Society. 141: 399-436. DOI: 10.1046/j.1095-8339.2003.t01-1-00158.x  0.92
2002 Sytsma KJ, Morawetz J, Pires JC, Nepokroeff M, Conti E, Zjhra M, Hall JC, Chase MW. Urticalean rosids: circumscription, rosid ancestry, and phylogenetics based on rbcL, trnL-F, and ndhF sequences. American Journal of Botany. 89: 1531-46. PMID 21665755 DOI: 10.3732/Ajb.89.9.1531  0.92
2002 Pires JC, Sytsma KJ. A phylogenetic evaluation of a biosystematic framework: Brodiaea and related petaloid monocots (Themidaceae). American Journal of Botany. 89: 1342-59. PMID 21665737 DOI: 10.3732/Ajb.89.8.1342  0.92
1999 Givnish TJ, Evans TM, Pires JC, Sytsma KJ. Polyphyly and convergent morphological evolution in Commelinales and Commelinidae: evidence from rbcL sequence data. Molecular Phylogenetics and Evolution. 12: 360-85. PMID 10413629 DOI: 10.1006/Mpev.1999.0601  0.92
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