| Year |
Citation |
Score |
| 2019 |
Yang W, Lee KW, Srivastava RM, Kuo F, Krishna C, Chowell D, Makarov V, Hoen D, Dalin MG, Wexler L, Ghossein R, Katabi N, Nadeem Z, Cohen MA, Tian SK, et al. Immunogenic neoantigens derived from gene fusions stimulate T cell responses. Nature Medicine. PMID 31011208 DOI: 10.1038/S41591-019-0434-2 |
0.364 |
|
| 2017 |
Joly-Lopez Z, Forczek E, Vello E, Hoen DR, Tomita A, Bureau TE. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Frontiers in Plant Science. 8: 2027. PMID 29250089 DOI: 10.3389/Fpls.2017.02027 |
0.708 |
|
| 2016 |
Joly-Lopez Z, Hoen DR, Blanchette M, Bureau TE. Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements. Molecular Biology and Evolution. PMID 27189548 DOI: 10.1093/Molbev/Msw067 |
0.722 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6 |
0.666 |
|
| 2015 |
Hoen DR, Bureau TE. Discovery of novel genes derived from transposable elements using integrative genomic analysis. Molecular Biology and Evolution. 32: 1487-506. PMID 25713212 DOI: 10.1093/Molbev/Msv042 |
0.748 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods Mobile Dna. 6. DOI: 10.1186/s13100-015-0044-6 |
0.615 |
|
| 2013 |
Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, et al. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nature Genetics. 45: 891-8. PMID 23817568 DOI: 10.1038/Ng.2684 |
0.737 |
|
| 2012 |
Joly-Lopez Z, Forczek E, Hoen DR, Juretic N, Bureau TE. A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana. Plos Genetics. 8: e1002931. PMID 22969437 DOI: 10.1371/Journal.Pgen.1002931 |
0.765 |
|
| 2012 |
Hoen DR, Bureau TE. Transposable element exaptation in plants Topics in Current Genetics. 24: 219-251. DOI: 10.1007/978-3-642-31842-9-12 |
0.641 |
|
| 2009 |
McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America. 106: 12273-8. PMID 19597147 DOI: 10.1073/Pnas.0900992106 |
0.686 |
|
| 2008 |
Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, ... ... Hoen DR, et al. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research. 36: D1028-33. PMID 18089549 DOI: 10.1093/Nar/Gkm978 |
0.718 |
|
| 2007 |
Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, ... ... Hoen D, et al. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Research. 17: 175-83. PMID 17210932 DOI: 10.1101/Gr.5509507 |
0.739 |
|
| 2006 |
Hoen DR, Park KC, Elrouby N, Yu Z, Mohabir N, Cowan RK, Bureau TE. Transposon-mediated expansion and diversification of a family of ULP-like genes. Molecular Biology and Evolution. 23: 1254-68. PMID 16581939 DOI: 10.1093/Molbev/Msk015 |
0.745 |
|
| 2005 |
Juretic N, Hoen DR, Huynh ML, Harrison PM, Bureau TE. The evolutionary fate of MULE-mediated duplications of host gene fragments in rice. Genome Research. 15: 1292-7. PMID 16140995 DOI: 10.1101/Gr.4064205 |
0.727 |
|
| 2005 |
Cowan RK, Hoen DR, Schoen DJ, Bureau TE. MUSTANG is a novel family of domesticated transposase genes found in diverse angiosperms. Molecular Biology and Evolution. 22: 2084-9. PMID 15987878 DOI: 10.1093/Molbev/Msi202 |
0.744 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2019 |
Hakimi AA, Ged Y, Flynn J, Hoen DR, Di Natale RG, Blum KA, Makarov V, Kuo F, Carlo MI, Lee C, Voss MH, Ostrovnaya I, Chan TA, Motzer RJ. The impact of PBRM1 mutations on overall survival in greater than 2,100 patients treated with immune checkpoint blockade (ICB). Journal of Clinical Oncology. 37: 666-666. DOI: 10.1200/Jco.2019.37.7_Suppl.666 |
0.259 |
|
| 2020 |
Hakimi AA, Attalla K, DiNatale RG, Ostrovnaya I, Flynn J, Blum KA, Ged Y, Hoen D, Kendall SM, Reznik E, Bowman A, Hwee J, Fong CJ, Kuo F, Voss MH, et al. A pan-cancer analysis of PBAF complex mutations and their association with immunotherapy response. Nature Communications. 11: 4168. PMID 32820162 DOI: 10.1038/S41467-020-17965-0 |
0.24 |
|
| 2021 |
Samstein RM, Krishna C, Ma X, Pei X, Lee KW, Makarov V, Kuo F, Chung J, Srivastava RM, Purohit TA, Hoen DR, Mandal R, Setton J, Wu W, Shah R, et al. Mutations in and differentially affect the tumor microenvironment and response to checkpoint blockade immunotherapy. Nature Cancer. 1: 1188-1203. PMID 33834176 DOI: 10.1038/s43018-020-00139-8 |
0.172 |
|
| 2022 |
Ma X, Riaz N, Samstein RM, Lee M, Makarov V, Valero C, Chowell D, Kuo F, Hoen D, Fitzgerald CWR, Jiang H, Alektiar J, Alban TJ, Juric I, Parthasarathy PB, et al. Functional landscapes of POLE and POLD1 mutations in checkpoint blockade-dependent antitumor immunity. Nature Genetics. 54: 996-1012. PMID 35817971 DOI: 10.1038/s41588-022-01108-w |
0.145 |
|
| 2021 |
Chowell D, Yoo SK, Valero C, Pastore A, Krishna C, Lee M, Hoen D, Shi H, Kelly DW, Patel N, Makarov V, Ma X, Vuong L, Sabio EY, Weiss K, et al. Improved prediction of immune checkpoint blockade efficacy across multiple cancer types. Nature Biotechnology. PMID 34725502 DOI: 10.1038/s41587-021-01070-8 |
0.114 |
|
| 2021 |
Valero C, Lee M, Hoen D, Weiss K, Kelly DW, Adusumilli PS, Paik PK, Plitas G, Ladanyi M, Postow MA, Ariyan CE, Shoushtari AN, Balachandran VP, Hakimi AA, Crago AM, et al. Pretreatment neutrophil-to-lymphocyte ratio and mutational burden as biomarkers of tumor response to immune checkpoint inhibitors. Nature Communications. 12: 729. PMID 33526794 DOI: 10.1038/s41467-021-20935-9 |
0.099 |
|
| 2021 |
Tello-Lafoz M, Srpan K, Sanchez EE, Hu J, Remsik J, Romin Y, Calò A, Hoen D, Bhanot U, Morris L, Boire A, Hsu KC, Massagué J, Huse M, Er EE. Cytotoxic lymphocytes target characteristic biophysical vulnerabilities in cancer. Immunity. PMID 33756102 DOI: 10.1016/j.immuni.2021.02.020 |
0.086 |
|
| 2021 |
Valero C, Lee M, Hoen D, Zehir A, Berger MF, Seshan VE, Chan TA, Morris LGT. Response Rates to Anti-PD-1 Immunotherapy in Microsatellite-Stable Solid Tumors With 10 or More Mutations per Megabase. Jama Oncology. PMID 33599686 DOI: 10.1001/jamaoncol.2020.7684 |
0.064 |
|
| 2021 |
Valero C, Lee M, Hoen D, Wang J, Nadeem Z, Patel N, Postow MA, Shoushtari AN, Plitas G, Balachandran VP, Smith JJ, Crago AM, Long Roche KC, Kelly DW, Samstein RM, et al. The association between tumor mutational burden and prognosis is dependent on treatment context. Nature Genetics. PMID 33398197 DOI: 10.1038/s41588-020-00752-4 |
0.062 |
|
| Hide low-probability matches. |